AT5G56050

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015040
Physical Location & Seq
Reverse (-)
22700919 .. 22702200
1282 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G56050.1

Sequence Viewer

Length: 852 bp
ATGTCAAAATTTTCTCCACCGCCACAATCTCAACCACAGCCGCCCGAAACACCACCATGGGAAACGCCGTCTTCTAAATGGTATTCTCCAATATACACGCCATGGAGAACAACTCCAAGAAGCACACAATCAACTCCAACGACTACACCAATAGCTCTTACCGAAGTGATTGTGTCTAAATCACCTTTGTCTAATCAGAAGAGCCCTGCAACTCCTAAACTAGACAGTATGGAAGCGCATCCTTTACACGAGACGATGGTTCTCTTACAGCTAAGAACAAGCCGGACCAATCCATGGATTTGGTGTGGTGCAGCTTTGTGTTTTATCTTCAGCATACTTCTTATAGTCTTTGGGATTGCTACTTTGATTCTCTATCTCGCCGTCAAACCAAGAACCCCTGTTTTTGACATCTCTAATGCAAAGCTCAACACCATCCTCTTTGAGTCACCGGTTTATTTCAACGGTGATATGTTGTTGCAGTTAAATTTCACCAATCCTAACAAGAAACTAAATGTGAGGTTTGAGAATCTTATGGTAGAGCTCTGGTTTGCCGACACAAAGATCGCCACACAAGGTGTCTTGCCGTTTTCGCAAAGAAACGGCAAGACTAGGCTAGAACCGATCCGTTTGATTTCAAATTTGGTCTTCTTGCCTGTAAATCATATACTTGAGCTCAGAAGACAAGTGACGAGCAATAGGATAGCTTATGAAATCAGAAGTAACTTCAGAGTCAAAGCTATTTTTGGGATGATTCATTATTCTTATATGCTACACGGGATTTGTCAGCTTCAATTGAGCAGTCCACCAGCCGGTGGCTTAGTTTATCGGAACTGCACTACAAAAAGATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

283

Amino Acids

32.26

Weight (kDa)

9.9

Isoelectric Point (pI)

56.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015040)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26490 AT5G56050
fragaria_vesca FvH4_3g42130
malus_domestica MD03G1038000.v1.1 MD11G1039100.v1.1
prunus_persica Prupe.6G029700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0075341
rosa_laevigata RLG00000036551
rosa_multiflora Rmu_sc0000770.1_g000034
rosa_roxburghii Rroxscaffold_1G00006190
rosa_rugosa Rorug05G0439000
rosa_samantha Rh5AG495400 Rh5BG517100 Rh5CG540700 Rh5DG532400
rosa_wichuraiana Rw5G045970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 294, 812
AciI CCGC 2 cut(s) 20, 41
AclWI GGATC 1 cut(s) 616
AcsI RAATTY 3 cut(s) 8, 484, 637
AcuI CTGAAG 2 cut(s) 313, 709
AdeI CACNNNGTG 1 cut(s) 575
AfiI CCNNNNNNNGG 3 cut(s) 294, 809, 812
AgeI ACCGGT 1 cut(s) 448
AgsI TTSAA 3 cut(s) 460, 636, 791
AluBI AGCT 9 cut(s) 155, 271, 314, 424, 541, 673, 704, 737, 787
AluI AGCT 9 cut(s) 155, 271, 314, 424, 541, 673, 704, 737, 787
Alw21I GWGCWC 2 cut(s) 543, 675
Alw26I GTCTC 1 cut(s) 245
AlwI GGATC 1 cut(s) 616
ApeKI GCWGC 1 cut(s) 311
ApoI RAATTY 3 cut(s) 8, 484, 637
AsiGI ACCGGT 1 cut(s) 448
AspLEI GCGC 1 cut(s) 238
AspS9I GGNCC 1 cut(s) 285
AsuHPI GGTGA 4 cut(s) 174, 438, 476, 481
AvaII GGWCC 1 cut(s) 285
BanII GRGCYC 3 cut(s) 206, 543, 675
BauI CACGAG 1 cut(s) 248
BbsI GAAGAC 3 cut(s) 63, 637, 685
Bbv12I GWGCWC 2 cut(s) 543, 675
BbvI GCAGC 1 cut(s) 323
BccI CCATC 3 cut(s) 250, 440, 840
BceAI ACGGC 4 cut(s) 52, 365, 568, 616
BcoDI GTCTC 1 cut(s) 245
BfaI CTAG 3 cut(s) 221, 609, 614
BisI GCNGC 2 cut(s) 41, 312
BlsI GCNGC 2 cut(s) 42, 313
Bme18I GGWCC 1 cut(s) 285
BmgT120I GGNCC 1 cut(s) 285
BmsI GCATC 1 cut(s) 247
BpiI GAAGAC 3 cut(s) 63, 637, 685
BplI GAGNNNNNCTC 2 cut(s) 97, 129
BpuEI CTTGAG 1 cut(s) 689
BsaJI CCNNGG 3 cut(s) 56, 101, 293
BsaWI WCCGGW 1 cut(s) 448
Bsc4I CCNNNNNNNGG 3 cut(s) 294, 809, 812
Bse118I RCCGGY 2 cut(s) 448, 809
BseDI CCNNGG 3 cut(s) 56, 101, 293
BseGI GGATG 3 cut(s) 238, 432, 753
BseLI CCNNNNNNNGG 3 cut(s) 294, 809, 812
BseMII CTCAG 1 cut(s) 688
BseXI GCAGC 1 cut(s) 323
BsgI GTGCAG 2 cut(s) 330, 817
BshTI ACCGGT 1 cut(s) 448
BsiHKAI GWGCWC 2 cut(s) 543, 675
BsiSI CCGG 3 cut(s) 283, 449, 810
BslI CCNNNNNNNGG 3 cut(s) 294, 809, 812
BsmAI GTCTC 1 cut(s) 245
BsmBI CGTCTC 1 cut(s) 245
Bsp1286I GDGCHC 3 cut(s) 206, 543, 675
Bsp143I GATC 2 cut(s) 561, 621
Bsp19I CCATGG 3 cut(s) 56, 101, 293
BspACI CCGC 2 cut(s) 20, 41
BspCNI CTCAG 1 cut(s) 687
BspPI GGATC 1 cut(s) 616
BspQI GCTCTTC 1 cut(s) 194
BsrFI RCCGGY 2 cut(s) 448, 809
BssAI RCCGGY 2 cut(s) 448, 809
BssECI CCNNGG 3 cut(s) 56, 101, 293
BssMI GATC 2 cut(s) 561, 621
BssSI CACGAG 1 cut(s) 248
BssT1I CCWWGG 3 cut(s) 56, 101, 293
Bst2BI CACGAG 1 cut(s) 248
Bst4CI ACNGT 2 cut(s) 227, 464
Bst6I CTCTTC 1 cut(s) 194
BstDEI CTNAG 3 cut(s) 272, 674, 817
BstDSI CCRYGG 3 cut(s) 56, 101, 293
BstF5I GGATG 3 cut(s) 238, 432, 753
BstHHI GCGC 1 cut(s) 238
BstKTI GATC 2 cut(s) 564, 624
BstMAI GTCTC 1 cut(s) 245
BstMBI GATC 2 cut(s) 561, 621
BstMWI GCNNNNNNNGC 1 cut(s) 589
BstV1I GCAGC 1 cut(s) 323
BstV2I GAAGAC 3 cut(s) 63, 637, 685
BstXI CCANNNNNNTGG 1 cut(s) 300
BtgI CCRYGG 3 cut(s) 56, 101, 293
BtsCI GGATG 3 cut(s) 238, 432, 753
CfoI GCGC 1 cut(s) 238
Cfr10I RCCGGY 2 cut(s) 448, 809
Cfr13I GGNCC 1 cut(s) 285
CspAI ACCGGT 1 cut(s) 448
CviAII CATG 3 cut(s) 57, 102, 294
DdeI CTNAG 3 cut(s) 272, 674, 817
DpnI GATC 2 cut(s) 563, 623
DpnII GATC 2 cut(s) 561, 621
DraIII CACNNNGTG 1 cut(s) 575
Eam1104I CTCTTC 1 cut(s) 194
EarI CTCTTC 1 cut(s) 194
Ecl136II GAGCTC 2 cut(s) 541, 673
Eco130I CCWWGG 3 cut(s) 56, 101, 293
Eco24I GRGCYC 3 cut(s) 206, 543, 675
Eco47I GGWCC 1 cut(s) 285
Eco53kI GAGCTC 2 cut(s) 541, 673
Eco57I CTGAAG 2 cut(s) 313, 709
EcoICRI GAGCTC 2 cut(s) 541, 673
EcoT14I CCWWGG 3 cut(s) 56, 101, 293
EcoT38I GRGCYC 3 cut(s) 206, 543, 675
ErhI CCWWGG 3 cut(s) 56, 101, 293
Esp3I CGTCTC 1 cut(s) 245
FaeI CATG 3 cut(s) 60, 105, 297
FatI CATG 3 cut(s) 56, 101, 293
Fnu4HI GCNGC 2 cut(s) 41, 312
FokI GGATG 3 cut(s) 225, 419, 760
FriOI GRGCYC 3 cut(s) 206, 543, 675
Fsp4HI GCNGC 2 cut(s) 41, 312
FspBI CTAG 3 cut(s) 221, 609, 614
GlaI GCGC 1 cut(s) 237
GluI GCNGC 2 cut(s) 41, 312
HapII CCGG 3 cut(s) 283, 449, 810
HhaI GCGC 1 cut(s) 238
Hin1II CATG 3 cut(s) 60, 105, 297
Hin6I GCGC 1 cut(s) 236
HinP1I GCGC 1 cut(s) 236
HinfI GANTC 5 cut(s) 367, 443, 526, 729, 751
HpaII CCGG 3 cut(s) 283, 449, 810
HphI GGTGA 4 cut(s) 174, 438, 476, 481
Hpy166II GTNNAC 1 cut(s) 803
Hpy188I TCNGA 5 cut(s) 198, 677, 716, 728, 828
Hpy8I GTNNAC 1 cut(s) 803
HpyCH4III ACNGT 2 cut(s) 227, 464
HpyCH4V TGCA 5 cut(s) 209, 311, 419, 478, 834
HpyF10VI GCNNNNNNNGC 1 cut(s) 589
HpyF3I CTNAG 3 cut(s) 272, 674, 817
Hsp92II CATG 3 cut(s) 60, 105, 297
HspAI GCGC 1 cut(s) 236
Kzo9I GATC 2 cut(s) 561, 621
LguI GCTCTTC 1 cut(s) 194
LpnPI CCDG 8 cut(s) 219, 296, 411, 462, 529, 666, 819, 823
Lsp1109I GCAGC 1 cut(s) 323
LweI GCATC 1 cut(s) 247
MaeI CTAG 3 cut(s) 221, 609, 614
MaeIII GTNAC 3 cut(s) 444, 685, 719
MalI GATC 2 cut(s) 563, 623
MboI GATC 2 cut(s) 561, 621
MboII GAAGA 5 cut(s) 63, 211, 319, 637, 690
MfeI CAATTG 1 cut(s) 791
MhlI GDGCHC 3 cut(s) 206, 543, 675
MluCI AATT 4 cut(s) 8, 484, 637, 791
MlyI GAGTC 2 cut(s) 452, 738
MmeI TCCRAC 1 cut(s) 161
MnlI CCTC 2 cut(s) 446, 510
MseI TTAA 1 cut(s) 482
MslI CAYNNNNRTG 1 cut(s) 55
MspI CCGG 3 cut(s) 283, 449, 810
MunI CAATTG 1 cut(s) 791
MwoI GCNNNNNNNGC 1 cut(s) 589
NcoI CCATGG 3 cut(s) 56, 101, 293
NdeII GATC 2 cut(s) 561, 621
NlaIII CATG 3 cut(s) 60, 105, 297
NmuCI GTSAC 2 cut(s) 444, 685
PciSI GCTCTTC 1 cut(s) 194
PfeI GAWTC 3 cut(s) 367, 526, 751
PflMI CCANNNNNTGG 2 cut(s) 294, 812
PinAI ACCGGT 1 cut(s) 448
PkrI GCNGC 2 cut(s) 42, 313
PleI GAGTC 2 cut(s) 451, 737
PpsI GAGTC 2 cut(s) 451, 737
Psp124BI GAGCTC 2 cut(s) 543, 675
PspPI GGNCC 1 cut(s) 285
RseI CAYNNNNRTG 1 cut(s) 55
SacI GAGCTC 2 cut(s) 543, 675
SapI GCTCTTC 1 cut(s) 194
SaqAI TTAA 1 cut(s) 482
SatI GCNGC 2 cut(s) 41, 312
Sau3AI GATC 2 cut(s) 561, 621
Sau96I GGNCC 1 cut(s) 285
SchI GAGTC 2 cut(s) 452, 738
SduI GDGCHC 3 cut(s) 206, 543, 675
SfaNI GCATC 1 cut(s) 247
SinI GGWCC 1 cut(s) 285
SmiMI CAYNNNNRTG 1 cut(s) 55
SmlI CTYRAG 1 cut(s) 668
SmoI CTYRAG 1 cut(s) 668
Sse9I AATT 4 cut(s) 8, 484, 637, 791
SsiI CCGC 2 cut(s) 20, 41
SspMI CTAG 3 cut(s) 221, 609, 614
SstI GAGCTC 2 cut(s) 543, 675
StyI CCWWGG 3 cut(s) 56, 101, 293
TaaI ACNGT 2 cut(s) 227, 464
TasI AATT 4 cut(s) 8, 484, 637, 791
TauI GCSGC 1 cut(s) 43
TfiI GAWTC 3 cut(s) 367, 526, 751
Tru1I TTAA 1 cut(s) 482
Tru9I TTAA 1 cut(s) 482
TseFI GTSAC 2 cut(s) 444, 685
TseI GCWGC 1 cut(s) 311
Tsp45I GTSAC 2 cut(s) 444, 685
TspDTI ATGAA 2 cut(s) 723, 743
TspGWI ACGGA 1 cut(s) 614
Van91I CCANNNNNTGG 2 cut(s) 294, 812
VpaK11BI GGWCC 1 cut(s) 285
XapI RAATTY 3 cut(s) 8, 484, 637
XspI CTAG 3 cut(s) 221, 609, 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.