Rh5AG495400

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0015040
Physical Location & Seq
Forward (+)
84242134 .. 84242973
840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG495400.1

Sequence Viewer

Length: 840 bp
ATGCTACCCCTTCCTCCTCCACCTGCATCTCCAATACCTCCTTCACCACTACTACAAGCCCAAAAGCAAACTAATCCCCTTCCTCCTCCACCTGCATCTCCAATACCACCTTCACCACTACTACAAGCCCAAAAGCAAACTAAGCCACACTCTCTAAATCAAATTATCATATCAAAGTATGCCCAGAATCAAGGCCTGGTGCCCGATGCAGCAGCAAATCATGAATCCAGAAAATCAGAAAAACAACCTATGCTCCGGCCACCTCTGGCTCGACGAACCAATCCACTTATATGGTGTTGTGCAATAGTATGTCTCTTATTCAGCCTTATTCTTATCTTCTTTGGAATTGCAACTTTGATCATGTTCCTTGTTGTTAGACCTAGAATTCCATTGTTTGACATTCCTAATGCAAAGCTCAACACCATCTACTTTGACTCACCAGAGTATTTCAATGGTGACTTCGCTTTATTGGCAAATTTCTCCAACCCAAATCGGAAAATAGATGTAAGATTTGAGTATCTGCAGATGGAACTGTACTTTTCTGATAGGCTCATAGCAACTCAGTCTCTTGACCCTTTCACTCAAAGACCTCGAGAAGGAAGGTTGGAAGCAGTTCACTTGGTATCCAGCTTGGTTTACTTGCCTGAGAATCATGCTGTGGCGCTTCGAACCCAGGTGCAGAACAATAGAGTCGACTATAATATAAGAGGAACATTTAGAGTGAGAGCCAGTCTGGGACTGATCCACTTTTCCTACTGGTTGCATAGCAGATGCCAATTACAGATGACAGGTCCACCGACTGGTGTTTTAGTTGCCCGAAGTTGCAAAACTAAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

279

Amino Acids

31.55

Weight (kDa)

9.94

Isoelectric Point (pI)

50.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 161 - 256 3.5e-07 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015040)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26490 AT5G56050
fragaria_vesca FvH4_3g42130
malus_domestica MD03G1038000.v1.1 MD11G1039100.v1.1
prunus_persica Prupe.6G029700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0075341
rosa_laevigata RLG00000036551
rosa_multiflora Rmu_sc0000770.1_g000034
rosa_roxburghii Rroxscaffold_1G00006190
rosa_rugosa Rorug05G0439000
rosa_samantha Rh5AG495400 Rh5BG517100 Rh5CG540700 Rh5DG532400
rosa_wichuraiana Rw5G045970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 31, 100
Acc36I ACCTGC 2 cut(s) 31, 100
AccB1I GGYRCC 1 cut(s) 199
AccB7I CCANNNNNTGG 1 cut(s) 800
AccI GTMKAC 1 cut(s) 693
AclWI GGATC 1 cut(s) 736
AcoI YGGCCR 1 cut(s) 257
AcsI RAATTY 2 cut(s) 384, 475
AfaI GTAC 1 cut(s) 536
AfiI CCNNNNNNNGG 2 cut(s) 596, 800
AgsI TTSAA 1 cut(s) 451
AjnI CCWGG 2 cut(s) 195, 672
AjuI GAANNNNNNNTTGG 4 cut(s) 25, 57, 94, 126
AluBI AGCT 2 cut(s) 415, 630
AluI AGCT 2 cut(s) 415, 630
Alw26I GTCTC 2 cut(s) 317, 570
AlwI GGATC 1 cut(s) 736
Ama87I CYCGRG 1 cut(s) 591
AoxI GGCC 2 cut(s) 193, 257
ApeKI GCWGC 2 cut(s) 209, 212
ApoI RAATTY 2 cut(s) 384, 475
Asp700I GAANNNNTTC 1 cut(s) 612
AspLEI GCGC 1 cut(s) 664
AspS9I GGNCC 1 cut(s) 791
AsuHPI GGTGA 4 cut(s) 36, 105, 429, 467
AsuII TTCGAA 1 cut(s) 667
AvaI CYCGRG 1 cut(s) 591
AvaII GGWCC 1 cut(s) 791
BaeGI GKGCMC 1 cut(s) 204
BanI GGYRCC 1 cut(s) 199
BbvI GCAGC 2 cut(s) 221, 224
BccI CCATC 2 cut(s) 431, 520
BciT130I CCWGG 2 cut(s) 197, 674
BciVI GTATCC 1 cut(s) 634
BclI TGATCA 1 cut(s) 357
BcoDI GTCTC 2 cut(s) 317, 570
BfaI CTAG 1 cut(s) 381
BfmI CTRYAG 1 cut(s) 521
BfoI RGCGCY 1 cut(s) 665
BfuAI ACCTGC 2 cut(s) 31, 100
BfuI GTATCC 1 cut(s) 634
BisI GCNGC 2 cut(s) 210, 213
BlsI GCNGC 2 cut(s) 211, 214
Bme1390I CCNGG 2 cut(s) 197, 674
Bme18I GGWCC 1 cut(s) 791
BmeT110I CYCGRG 1 cut(s) 591
BmgT120I GGNCC 1 cut(s) 791
BmiI GGNNCC 1 cut(s) 201
BmrFI CCNGG 2 cut(s) 197, 674
BmsI GCATC 4 cut(s) 35, 104, 196, 761
Bpu14I TTCGAA 1 cut(s) 667
BsaJI CCNNGG 1 cut(s) 672
BsaXI ACNNNNNCTCC 2 cut(s) 237, 267
Bsc4I CCNNNNNNNGG 2 cut(s) 596, 800
Bse1I ACTGG 3 cut(s) 729, 761, 805
BseBI CCWGG 2 cut(s) 197, 674
BseDI CCNNGG 1 cut(s) 672
BseLI CCNNNNNNNGG 2 cut(s) 596, 800
BseMII CTCAG 2 cut(s) 575, 636
BseNI ACTGG 3 cut(s) 729, 761, 805
BseRI GAGGAG 2 cut(s) 6, 75
BseSI GKGCMC 1 cut(s) 204
BseXI GCAGC 2 cut(s) 221, 224
BsgI GTGCAG 1 cut(s) 698
BshFI GGCC 2 cut(s) 195, 259
BshNI GGYRCC 1 cut(s) 199
BsiHKCI CYCGRG 1 cut(s) 591
BsiSI CCGG 1 cut(s) 256
BslFI GGGAC 1 cut(s) 750
BslI CCNNNNNNNGG 2 cut(s) 596, 800
BsmAI GTCTC 2 cut(s) 317, 570
BsmFI GGGAC 1 cut(s) 750
BsnI GGCC 2 cut(s) 195, 259
BsoBI CYCGRG 1 cut(s) 591
Bsp119I TTCGAA 1 cut(s) 667
Bsp1286I GDGCHC 1 cut(s) 204
Bsp143I GATC 2 cut(s) 357, 741
BspANI GGCC 2 cut(s) 195, 259
BspCNI CTCAG 2 cut(s) 574, 637
BspHI TCATGA 1 cut(s) 220
BspLI GGNNCC 1 cut(s) 201
BspMAI CTGCAG 1 cut(s) 525
BspMI ACCTGC 2 cut(s) 31, 100
BspPI GGATC 1 cut(s) 736
BspT104I TTCGAA 1 cut(s) 667
BspT107I GGYRCC 1 cut(s) 199
BsrI ACTGG 3 cut(s) 729, 761, 805
BssECI CCNNGG 1 cut(s) 672
BssMI GATC 2 cut(s) 357, 741
Bst2UI CCWGG 2 cut(s) 197, 674
Bst4CI ACNGT 1 cut(s) 534
BstBI TTCGAA 1 cut(s) 667
BstDEI CTNAG 3 cut(s) 141, 561, 645
BstENI CCTNNNNNAGG 1 cut(s) 594
BstH2I RGCGCY 1 cut(s) 665
BstHHI GCGC 1 cut(s) 664
BstKTI GATC 2 cut(s) 360, 744
BstMAI GTCTC 2 cut(s) 317, 570
BstMBI GATC 2 cut(s) 357, 741
BstMWI GCNNNNNNNGC 2 cut(s) 142, 470
BstNI CCWGG 2 cut(s) 197, 674
BstSCI CCNGG 2 cut(s) 195, 672
BstSFI CTRYAG 1 cut(s) 521
BstSLI GKGCMC 1 cut(s) 204
BstV1I GCAGC 2 cut(s) 221, 224
BstXI CCANNNNNNTGG 1 cut(s) 291
BsuI GTATCC 1 cut(s) 634
BsuRI GGCC 2 cut(s) 195, 259
BveI ACCTGC 2 cut(s) 31, 100
CciI TCATGA 1 cut(s) 220
CfoI GCGC 1 cut(s) 664
Cfr13I GGNCC 1 cut(s) 791
Csp6I GTAC 1 cut(s) 535
CviAII CATG 3 cut(s) 221, 361, 653
CviQI GTAC 1 cut(s) 535
DdeI CTNAG 3 cut(s) 141, 561, 645
DpnI GATC 2 cut(s) 359, 743
DpnII GATC 2 cut(s) 357, 741
EaeI YGGCCR 1 cut(s) 257
Eco147I AGGCCT 1 cut(s) 195
Eco47I GGWCC 1 cut(s) 791
Eco88I CYCGRG 1 cut(s) 591
EcoNI CCTNNNNNAGG 1 cut(s) 594
EcoRI GAATTC 1 cut(s) 384
EcoRII CCWGG 2 cut(s) 195, 672
FaeI CATG 3 cut(s) 224, 364, 656
FaqI GGGAC 1 cut(s) 750
FatI CATG 3 cut(s) 220, 360, 652
FbaI TGATCA 1 cut(s) 357
FblI GTMKAC 1 cut(s) 693
Fnu4HI GCNGC 2 cut(s) 210, 213
Fsp4HI GCNGC 2 cut(s) 210, 213
FspBI CTAG 1 cut(s) 381
GlaI GCGC 1 cut(s) 663
GluI GCNGC 2 cut(s) 210, 213
HaeII RGCGCY 1 cut(s) 665
HaeIII GGCC 2 cut(s) 195, 259
HapII CCGG 1 cut(s) 256
HhaI GCGC 1 cut(s) 664
Hin1II CATG 3 cut(s) 224, 364, 656
Hin6I GCGC 1 cut(s) 662
HinP1I GCGC 1 cut(s) 662
HincII GTYRAC 1 cut(s) 694
HindII GTYRAC 1 cut(s) 694
HinfI GANTC 5 cut(s) 187, 224, 434, 649, 690
HpaII CCGG 1 cut(s) 256
HphI GGTGA 4 cut(s) 36, 105, 429, 467
Hpy166II GTNNAC 4 cut(s) 616, 637, 694, 794
Hpy188I TCNGA 3 cut(s) 238, 495, 544
Hpy188III TCNNGA 4 cut(s) 221, 228, 569, 593
Hpy8I GTNNAC 4 cut(s) 616, 637, 694, 794
Hpy99I CGWCG 1 cut(s) 276
HpyAV CCTTC 6 cut(s) 20, 51, 89, 120, 590, 594
HpyCH4III ACNGT 1 cut(s) 534
HpyF10VI GCNNNNNNNGC 2 cut(s) 142, 470
HpyF3I CTNAG 3 cut(s) 141, 561, 645
Hsp92II CATG 3 cut(s) 224, 364, 656
HspAI GCGC 1 cut(s) 662
Ksp22I TGATCA 1 cut(s) 357
Kzo9I GATC 2 cut(s) 357, 741
LmnI GCTCC 1 cut(s) 258
Lsp1109I GCAGC 2 cut(s) 221, 224
LweI GCATC 4 cut(s) 35, 104, 196, 761
MaeI CTAG 1 cut(s) 381
MaeIII GTNAC 1 cut(s) 455
MalI GATC 2 cut(s) 359, 743
MboI GATC 2 cut(s) 357, 741
MboII GAAGA 1 cut(s) 328
MhlI GDGCHC 1 cut(s) 204
MluCI AATT 5 cut(s) 162, 345, 384, 475, 776
MlyI GAGTC 2 cut(s) 428, 699
MmeI TCCRAC 2 cut(s) 507, 585
MnlI CCTC 8 cut(s) 24, 27, 48, 93, 96, 273, 600, 701
MroXI GAANNNNTTC 1 cut(s) 612
MslI CAYNNNNRTG 1 cut(s) 289
MspI CCGG 1 cut(s) 256
MspR9I CCNGG 2 cut(s) 197, 674
MvaI CCWGG 2 cut(s) 197, 674
MwoI GCNNNNNNNGC 2 cut(s) 142, 470
NdeII GATC 2 cut(s) 357, 741
NlaIII CATG 3 cut(s) 224, 364, 656
NlaIV GGNNCC 1 cut(s) 201
NmuCI GTSAC 1 cut(s) 455
NspV TTCGAA 1 cut(s) 667
PaeR7I CTCGAG 1 cut(s) 591
PagI TCATGA 1 cut(s) 220
PaqCI CACCTGC 2 cut(s) 31, 100
PceI AGGCCT 1 cut(s) 195
PdmI GAANNNNTTC 1 cut(s) 612
PfeI GAWTC 3 cut(s) 187, 224, 649
PflMI CCANNNNNTGG 1 cut(s) 800
PkrI GCNGC 2 cut(s) 211, 214
PleI GAGTC 2 cut(s) 428, 698
PpsI GAGTC 2 cut(s) 428, 698
Psp6I CCWGG 2 cut(s) 195, 672
PspGI CCWGG 2 cut(s) 195, 672
PspN4I GGNNCC 1 cut(s) 201
PspPI GGNCC 1 cut(s) 791
PstI CTGCAG 1 cut(s) 525
RsaI GTAC 1 cut(s) 536
RsaNI GTAC 1 cut(s) 535
RseI CAYNNNNRTG 1 cut(s) 289
SalI GTCGAC 1 cut(s) 692
SatI GCNGC 2 cut(s) 210, 213
Sau3AI GATC 2 cut(s) 357, 741
Sau96I GGNCC 1 cut(s) 791
SchI GAGTC 2 cut(s) 428, 699
ScrFI CCNGG 2 cut(s) 197, 674
SduI GDGCHC 1 cut(s) 204
SfaNI GCATC 4 cut(s) 35, 104, 196, 761
SfcI CTRYAG 1 cut(s) 521
Sfr274I CTCGAG 1 cut(s) 591
SfuI TTCGAA 1 cut(s) 667
SinI GGWCC 1 cut(s) 791
SlaI CTCGAG 1 cut(s) 591
SmiMI CAYNNNNRTG 1 cut(s) 289
SmlI CTYRAG 1 cut(s) 591
SmoI CTYRAG 1 cut(s) 591
Sse9I AATT 5 cut(s) 162, 345, 384, 475, 776
SseBI AGGCCT 1 cut(s) 195
SspMI CTAG 1 cut(s) 381
StuI AGGCCT 1 cut(s) 195
StyD4I CCNGG 2 cut(s) 195, 672
TaaI ACNGT 1 cut(s) 534
TaqI TCGA 4 cut(s) 271, 592, 667, 693
TasI AATT 5 cut(s) 162, 345, 384, 475, 776
TatI WGTACW 1 cut(s) 534
TfiI GAWTC 3 cut(s) 187, 224, 649
TseFI GTSAC 1 cut(s) 455
TseI GCWGC 2 cut(s) 209, 212
Tsp45I GTSAC 1 cut(s) 455
TspDTI ATGAA 1 cut(s) 237
Van91I CCANNNNNTGG 1 cut(s) 800
VpaK11BI GGWCC 1 cut(s) 791
XagI CCTNNNNNAGG 1 cut(s) 594
XapI RAATTY 2 cut(s) 384, 475
XhoI CTCGAG 1 cut(s) 591
XmiI GTMKAC 1 cut(s) 693
XmnI GAANNNNTTC 1 cut(s) 612
XspI CTAG 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.