Rroxscaffold_1G00006190

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0015040
Physical Location & Seq
Reverse (-)
8196872 .. 8201407
4536 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00006190.1

Sequence Viewer

Length: 891 bp
ATGGGTTTCTCGTACCCATTATTTACTGTTCTTCTGGCTATTTTGGTAGAGATGCTACCCCTTCCTCCTCCACCTGCATCTCCAATACCTCCTTCACCACTACTACAAGCCCAAAAGCAAACTATTCCCCTTCCTCCTCCACCTGCATCTCCAATACCACCTTCACCACTACTACAAGCCCAAAAGCAAACTAAGCCACACTCTCTAAATCAAACTACCATATCAAAGTATGCCCAGAATCAAGGCCTGGTGCCTCATGCAGCAGCAAATCATGAATCCAGAAAATCAGAAAAACAACCTATGCTCCGGCCACCTCAGGCTCGACGAACCAATCCACTTATATGGTGTTGTGCAGTAGTATGTCTCATATTCAGCCTTATTCTTATCTTCTTTGGAATTGCAACTTTGATCATGTTTCTTGTTGTTAGACCTAGAATTCCATTGTTTGACATTCCTAATGCAAAGCTCAACACCATCTACTTTGACTCACCAGAGTATTTCAATGGTGACTTCGCTTTATTGGCAAATTTCTCCAACCCAAATCGGAAAATAGATGTAAGATTTGAGTATCTGCAGATGGAACTGTACTTTTCTGATAGGCTCATAGCAACTCAGTCTCTTGACCCTTTCACTCAAAGACCTCGAGAAGGAAGGTTGGAAGCAGTTCACTTGGTATCCAGCTTGGTTTACTTGCCTGAGAATCACGCTGTAGCGCTTCGAACCCAGGTGCAGAACAATAGAGTCGACTATAATATAAGAGGCACATTTAGAGTGAGAGCCAGTCTGGGACTGATCCACTTTTCCTACTGGTTGCATAGCAGATGCCAATTACAGATGACAGGTCCACCGACTGGTGTTTTAGTTGCCCGAAGTTGCCGAACTAAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

296

Amino Acids

33.47

Weight (kDa)

9.94

Isoelectric Point (pI)

51.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 178 - 273 4e-07 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015040)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26490 AT5G56050
fragaria_vesca FvH4_3g42130
malus_domestica MD03G1038000.v1.1 MD11G1039100.v1.1
prunus_persica Prupe.6G029700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0075341
rosa_laevigata RLG00000036551
rosa_multiflora Rmu_sc0000770.1_g000034
rosa_roxburghii Rroxscaffold_1G00006190
rosa_rugosa Rorug05G0439000
rosa_samantha Rh5AG495400 Rh5BG517100 Rh5CG540700 Rh5DG532400
rosa_wichuraiana Rw5G045970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 82, 151
Acc36I ACCTGC 2 cut(s) 82, 151
AccB1I GGYRCC 1 cut(s) 250
AccB7I CCANNNNNTGG 1 cut(s) 851
AccI GTMKAC 1 cut(s) 744
AclWI GGATC 1 cut(s) 787
AcoI YGGCCR 1 cut(s) 308
AcsI RAATTY 2 cut(s) 435, 526
AfaI GTAC 2 cut(s) 14, 587
AfeI AGCGCT 1 cut(s) 714
AfiI CCNNNNNNNGG 2 cut(s) 647, 851
AgsI TTSAA 1 cut(s) 502
AjnI CCWGG 2 cut(s) 246, 723
AjuI GAANNNNNNNTTGG 4 cut(s) 76, 108, 145, 177
AluBI AGCT 2 cut(s) 466, 681
AluI AGCT 2 cut(s) 466, 681
Alw26I GTCTC 2 cut(s) 368, 621
AlwI GGATC 1 cut(s) 787
Ama87I CYCGRG 1 cut(s) 642
Aor51HI AGCGCT 1 cut(s) 714
AoxI GGCC 2 cut(s) 244, 308
ApeKI GCWGC 2 cut(s) 260, 263
ApoI RAATTY 2 cut(s) 435, 526
Asp700I GAANNNNTTC 1 cut(s) 663
AspLEI GCGC 1 cut(s) 715
AspS9I GGNCC 1 cut(s) 842
AsuHPI GGTGA 4 cut(s) 87, 156, 480, 518
AsuII TTCGAA 1 cut(s) 718
AvaI CYCGRG 1 cut(s) 642
AvaII GGWCC 1 cut(s) 842
AxyI CCTNAGG 1 cut(s) 315
BanI GGYRCC 1 cut(s) 250
BbvI GCAGC 2 cut(s) 272, 275
BccI CCATC 2 cut(s) 482, 571
BciT130I CCWGG 2 cut(s) 248, 725
BciVI GTATCC 1 cut(s) 685
BclI TGATCA 1 cut(s) 408
BcoDI GTCTC 2 cut(s) 368, 621
BfaI CTAG 1 cut(s) 432
BfmI CTRYAG 2 cut(s) 572, 708
BfoI RGCGCY 1 cut(s) 716
BfuAI ACCTGC 2 cut(s) 82, 151
BfuI GTATCC 1 cut(s) 685
BisI GCNGC 2 cut(s) 261, 264
BlsI GCNGC 2 cut(s) 262, 265
Bme1390I CCNGG 2 cut(s) 248, 725
Bme18I GGWCC 1 cut(s) 842
BmeT110I CYCGRG 1 cut(s) 642
BmgT120I GGNCC 1 cut(s) 842
BmiI GGNNCC 1 cut(s) 252
BmrFI CCNGG 2 cut(s) 248, 725
BmsI GCATC 4 cut(s) 42, 86, 155, 812
Bpu14I TTCGAA 1 cut(s) 718
BsaJI CCNNGG 1 cut(s) 723
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bsc4I CCNNNNNNNGG 2 cut(s) 647, 851
Bse1I ACTGG 3 cut(s) 780, 812, 856
Bse21I CCTNAGG 1 cut(s) 315
BseBI CCWGG 2 cut(s) 248, 725
BseDI CCNNGG 1 cut(s) 723
BseLI CCNNNNNNNGG 2 cut(s) 647, 851
BseMII CTCAG 3 cut(s) 329, 626, 687
BseNI ACTGG 3 cut(s) 780, 812, 856
BseRI GAGGAG 2 cut(s) 57, 126
BseXI GCAGC 2 cut(s) 272, 275
BsgI GTGCAG 2 cut(s) 372, 749
BshFI GGCC 2 cut(s) 246, 310
BshNI GGYRCC 1 cut(s) 250
BsiHKCI CYCGRG 1 cut(s) 642
BsiSI CCGG 1 cut(s) 307
BslFI GGGAC 1 cut(s) 801
BslI CCNNNNNNNGG 2 cut(s) 647, 851
BsmAI GTCTC 2 cut(s) 368, 621
BsmFI GGGAC 1 cut(s) 801
BsnI GGCC 2 cut(s) 246, 310
BsoBI CYCGRG 1 cut(s) 642
Bsp119I TTCGAA 1 cut(s) 718
Bsp143I GATC 2 cut(s) 408, 792
BspANI GGCC 2 cut(s) 246, 310
BspCNI CTCAG 3 cut(s) 328, 625, 688
BspHI TCATGA 1 cut(s) 271
BspLI GGNNCC 1 cut(s) 252
BspMAI CTGCAG 1 cut(s) 576
BspMI ACCTGC 2 cut(s) 82, 151
BspPI GGATC 1 cut(s) 787
BspT104I TTCGAA 1 cut(s) 718
BspT107I GGYRCC 1 cut(s) 250
BsrI ACTGG 3 cut(s) 780, 812, 856
BssECI CCNNGG 1 cut(s) 723
BssMI GATC 2 cut(s) 408, 792
Bst2UI CCWGG 2 cut(s) 248, 725
Bst4CI ACNGT 2 cut(s) 28, 585
BstBI TTCGAA 1 cut(s) 718
BstDEI CTNAG 4 cut(s) 192, 315, 612, 696
BstENI CCTNNNNNAGG 1 cut(s) 645
BstH2I RGCGCY 1 cut(s) 716
BstHHI GCGC 1 cut(s) 715
BstKTI GATC 2 cut(s) 411, 795
BstMAI GTCTC 2 cut(s) 368, 621
BstMBI GATC 2 cut(s) 408, 792
BstMWI GCNNNNNNNGC 2 cut(s) 193, 521
BstNI CCWGG 2 cut(s) 248, 725
BstSCI CCNGG 2 cut(s) 246, 723
BstSFI CTRYAG 2 cut(s) 572, 708
BstV1I GCAGC 2 cut(s) 272, 275
BstXI CCANNNNNNTGG 1 cut(s) 342
Bsu36I CCTNAGG 1 cut(s) 315
BsuI GTATCC 1 cut(s) 685
BsuRI GGCC 2 cut(s) 246, 310
BveI ACCTGC 2 cut(s) 82, 151
CciI TCATGA 1 cut(s) 271
CfoI GCGC 1 cut(s) 715
Cfr13I GGNCC 1 cut(s) 842
Csp6I GTAC 2 cut(s) 13, 586
CviAII CATG 3 cut(s) 257, 272, 412
CviQI GTAC 2 cut(s) 13, 586
DdeI CTNAG 4 cut(s) 192, 315, 612, 696
DpnI GATC 2 cut(s) 410, 794
DpnII GATC 2 cut(s) 408, 792
EaeI YGGCCR 1 cut(s) 308
Eco147I AGGCCT 1 cut(s) 246
Eco47I GGWCC 1 cut(s) 842
Eco47III AGCGCT 1 cut(s) 714
Eco81I CCTNAGG 1 cut(s) 315
Eco88I CYCGRG 1 cut(s) 642
EcoNI CCTNNNNNAGG 1 cut(s) 645
EcoRI GAATTC 1 cut(s) 435
EcoRII CCWGG 2 cut(s) 246, 723
FaeI CATG 3 cut(s) 260, 275, 415
FaqI GGGAC 1 cut(s) 801
FatI CATG 3 cut(s) 256, 271, 411
FbaI TGATCA 1 cut(s) 408
FblI GTMKAC 1 cut(s) 744
Fnu4HI GCNGC 2 cut(s) 261, 264
Fsp4HI GCNGC 2 cut(s) 261, 264
FspBI CTAG 1 cut(s) 432
GlaI GCGC 1 cut(s) 714
GluI GCNGC 2 cut(s) 261, 264
HaeII RGCGCY 1 cut(s) 716
HaeIII GGCC 2 cut(s) 246, 310
HapII CCGG 1 cut(s) 307
HhaI GCGC 1 cut(s) 715
Hin1II CATG 3 cut(s) 260, 275, 415
Hin6I GCGC 1 cut(s) 713
HinP1I GCGC 1 cut(s) 713
HincII GTYRAC 1 cut(s) 745
HindII GTYRAC 1 cut(s) 745
HinfI GANTC 5 cut(s) 238, 275, 485, 700, 741
HpaII CCGG 1 cut(s) 307
HphI GGTGA 4 cut(s) 87, 156, 480, 518
Hpy166II GTNNAC 4 cut(s) 667, 688, 745, 845
Hpy188I TCNGA 3 cut(s) 289, 546, 595
Hpy188III TCNNGA 4 cut(s) 272, 279, 620, 644
Hpy8I GTNNAC 4 cut(s) 667, 688, 745, 845
Hpy99I CGWCG 1 cut(s) 327
HpyAV CCTTC 6 cut(s) 71, 102, 140, 171, 641, 645
HpyCH4III ACNGT 2 cut(s) 28, 585
HpyCH4V TGCA 9 cut(s) 77, 146, 260, 353, 401, 461, 574, 730, 814
HpyF10VI GCNNNNNNNGC 2 cut(s) 193, 521
HpyF3I CTNAG 4 cut(s) 192, 315, 612, 696
Hsp92II CATG 3 cut(s) 260, 275, 415
HspAI GCGC 1 cut(s) 713
Ksp22I TGATCA 1 cut(s) 408
Kzo9I GATC 2 cut(s) 408, 792
LmnI GCTCC 1 cut(s) 309
Lsp1109I GCAGC 2 cut(s) 272, 275
LweI GCATC 4 cut(s) 42, 86, 155, 812
MaeI CTAG 1 cut(s) 432
MaeIII GTNAC 1 cut(s) 506
MalI GATC 2 cut(s) 410, 794
MboI GATC 2 cut(s) 408, 792
MboII GAAGA 2 cut(s) 23, 379
MluCI AATT 4 cut(s) 396, 435, 526, 827
MlyI GAGTC 2 cut(s) 479, 750
MmeI TCCRAC 2 cut(s) 558, 636
MnlI CCTC 9 cut(s) 75, 78, 99, 144, 147, 264, 324, 651, 752
MroXI GAANNNNTTC 1 cut(s) 663
MslI CAYNNNNRTG 1 cut(s) 340
MspI CCGG 1 cut(s) 307
MspR9I CCNGG 2 cut(s) 248, 725
MvaI CCWGG 2 cut(s) 248, 725
MwoI GCNNNNNNNGC 2 cut(s) 193, 521
NdeII GATC 2 cut(s) 408, 792
NlaIII CATG 3 cut(s) 260, 275, 415
NlaIV GGNNCC 1 cut(s) 252
NmuCI GTSAC 1 cut(s) 506
NspV TTCGAA 1 cut(s) 718
PaeR7I CTCGAG 1 cut(s) 642
PagI TCATGA 1 cut(s) 271
PaqCI CACCTGC 2 cut(s) 82, 151
PceI AGGCCT 1 cut(s) 246
PdmI GAANNNNTTC 1 cut(s) 663
PfeI GAWTC 3 cut(s) 238, 275, 700
PflMI CCANNNNNTGG 1 cut(s) 851
PkrI GCNGC 2 cut(s) 262, 265
PleI GAGTC 2 cut(s) 479, 749
PpsI GAGTC 2 cut(s) 479, 749
Psp6I CCWGG 2 cut(s) 246, 723
PspGI CCWGG 2 cut(s) 246, 723
PspN4I GGNNCC 1 cut(s) 252
PspPI GGNCC 1 cut(s) 842
PstI CTGCAG 1 cut(s) 576
RsaI GTAC 2 cut(s) 14, 587
RsaNI GTAC 2 cut(s) 13, 586
RseI CAYNNNNRTG 1 cut(s) 340
SalI GTCGAC 1 cut(s) 743
SatI GCNGC 2 cut(s) 261, 264
Sau3AI GATC 2 cut(s) 408, 792
Sau96I GGNCC 1 cut(s) 842
SchI GAGTC 2 cut(s) 479, 750
ScrFI CCNGG 2 cut(s) 248, 725
SfaNI GCATC 4 cut(s) 42, 86, 155, 812
SfcI CTRYAG 2 cut(s) 572, 708
Sfr274I CTCGAG 1 cut(s) 642
SfuI TTCGAA 1 cut(s) 718
SinI GGWCC 1 cut(s) 842
SlaI CTCGAG 1 cut(s) 642
SmiMI CAYNNNNRTG 1 cut(s) 340
SmlI CTYRAG 1 cut(s) 642
SmoI CTYRAG 1 cut(s) 642
Sse9I AATT 4 cut(s) 396, 435, 526, 827
SseBI AGGCCT 1 cut(s) 246
SspMI CTAG 1 cut(s) 432
StuI AGGCCT 1 cut(s) 246
StyD4I CCNGG 2 cut(s) 246, 723
TaaI ACNGT 2 cut(s) 28, 585
TaqI TCGA 4 cut(s) 322, 643, 718, 744
TasI AATT 4 cut(s) 396, 435, 526, 827
TatI WGTACW 1 cut(s) 585
TfiI GAWTC 3 cut(s) 238, 275, 700
TseFI GTSAC 1 cut(s) 506
TseI GCWGC 2 cut(s) 260, 263
Tsp45I GTSAC 1 cut(s) 506
TspDTI ATGAA 1 cut(s) 288
Van91I CCANNNNNTGG 1 cut(s) 851
VpaK11BI GGWCC 1 cut(s) 842
XagI CCTNNNNNAGG 1 cut(s) 645
XapI RAATTY 2 cut(s) 435, 526
XhoI CTCGAG 1 cut(s) 642
XmiI GTMKAC 1 cut(s) 744
XmnI GAANNNNTTC 1 cut(s) 663
XspI CTAG 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.