Prupe.6G029700_v2.0.a1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0015040
Physical Location & Seq
Reverse (-)
2301302 .. 2302109
808 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G029700.1

Sequence Viewer

Length: 801 bp
ATGTTAACTCTCCCACCTCCACCTCCATCTCCAATTCCACCTTCACCTCTACCTCAACCCCCAGCGCAGAGGCATATCCAACACCCACCCCAAGCCCCACGGCAAACCACACCGGTCTCTCTCAACCAAATTATCATATCAAAGCTTGCTACAAATCGAAAAGTTCCAGCACCTGATGCAATAGATCAGGTCTCCAGTAAATCAACAAAGCAACCAATACTCCGGCAACCTCAACGGACCAAGCCACTTATATGGTGTTGTGCAATTGTGTGTCTCATATTCAGCCTTATTCTTATCATCTTTGGAATTGCAACTTTGATCATCTTCCTAGTTGTTAAACCAAAAACTCCATTGTTTGACATCCCCAATGCAAGCCTCAACACCATCTACTTTGACTCACCAGAGTATTTCAATGGTGACTTCACTTTCCTGGCAAATTTCTCCAACCCAAATCGGAAAATCGATATTAGATTTGAGTATCTGGATCTGGAGCTTTACTTTTCTGACAGGCTCATAGCAACTCAATCTCTTGGACCTTTCACTCAAAGACCTGGAGAAGGAAGGTTGGGATCAGTTCGCTTAATATCAAGCTTGGTTTACTTGCCTGAGAATCACGCTGTGGCTCTTCGAACACAGGTACAGAACAATAGGGTCAACTATAATATAAGAGGAACATTTAAAGTGAGAGCCACTCTAGGAATGATCCATTTTTCTTACTGGTTGCATAGCAGATGCCAATTACAGATGACAGGCCCACCAACTGGTGTTTTAGTTGCGCGAAGTTGCAAAACTAAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

267

Amino Acids

29.94

Weight (kDa)

10.11

Isoelectric Point (pI)

46.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015040)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26490 AT5G56050
fragaria_vesca FvH4_3g42130
malus_domestica MD03G1038000.v1.1 MD11G1039100.v1.1
prunus_persica Prupe.6G029700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0075341
rosa_laevigata RLG00000036551
rosa_multiflora Rmu_sc0000770.1_g000034
rosa_roxburghii Rroxscaffold_1G00006190
rosa_rugosa Rorug05G0439000
rosa_samantha Rh5AG495400 Rh5BG517100 Rh5CG540700 Rh5DG532400
rosa_wichuraiana Rw5G045970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 761
AccII CGCG 1 cut(s) 778
AclWI GGATC 3 cut(s) 492, 577, 697
AcsI RAATTY 1 cut(s) 436
AdeI CACNNNGTG 1 cut(s) 619
AfaI GTAC 1 cut(s) 639
AfiI CCNNNNNNNGG 2 cut(s) 557, 761
AgeI ACCGGT 1 cut(s) 112
AgsI TTSAA 1 cut(s) 412
AjnI CCWGG 2 cut(s) 429, 550
AjuI GAANNNNNNNTTGG 2 cut(s) 25, 57
AluBI AGCT 3 cut(s) 145, 493, 591
AluI AGCT 3 cut(s) 145, 493, 591
Alw26I GTCTC 3 cut(s) 121, 196, 278
AlwI GGATC 3 cut(s) 492, 577, 697
AlwNI CAGNNNCTG 1 cut(s) 173
AoxI GGCC 1 cut(s) 751
ApoI RAATTY 1 cut(s) 436
AsiGI ACCGGT 1 cut(s) 112
AspLEI GCGC 2 cut(s) 67, 778
AspS9I GGNCC 3 cut(s) 237, 533, 752
AsuHPI GGTGA 3 cut(s) 36, 390, 428
AsuII TTCGAA 1 cut(s) 628
AvaII GGWCC 2 cut(s) 237, 533
BccI CCATC 2 cut(s) 34, 392
BceAI ACGGC 1 cut(s) 116
BciT130I CCWGG 2 cut(s) 431, 552
BclI TGATCA 1 cut(s) 318
BcoDI GTCTC 3 cut(s) 121, 196, 278
BfaI CTAG 2 cut(s) 329, 695
Bme1390I CCNGG 2 cut(s) 431, 552
Bme18I GGWCC 2 cut(s) 237, 533
BmgT120I GGNCC 3 cut(s) 237, 533, 752
BmrFI CCNGG 2 cut(s) 431, 552
BmsI GCATC 2 cut(s) 166, 722
BplI GAGNNNNNCTC 2 cut(s) 676, 708
BpmI CTGGAG 3 cut(s) 178, 509, 573
Bpu14I TTCGAA 1 cut(s) 628
Bsa29I ATCGAT 1 cut(s) 462
BsaI GGTCTC 2 cut(s) 121, 196
BsaJI CCNNGG 1 cut(s) 98
BsaWI WCCGGW 1 cut(s) 112
BsaXI ACNNNNNCTCC 2 cut(s) 204, 234
Bsc4I CCNNNNNNNGG 2 cut(s) 557, 761
Bse118I RCCGGY 1 cut(s) 112
Bse1I ACTGG 3 cut(s) 195, 722, 766
BseBI CCWGG 2 cut(s) 431, 552
BseCI ATCGAT 1 cut(s) 462
BseDI CCNNGG 1 cut(s) 98
BseGI GGATG 1 cut(s) 360
BseLI CCNNNNNNNGG 2 cut(s) 557, 761
BseMII CTCAG 1 cut(s) 597
BseNI ACTGG 3 cut(s) 195, 722, 766
BseYI CCCAGC 1 cut(s) 61
Bsh1236I CGCG 1 cut(s) 778
BshFI GGCC 1 cut(s) 753
BshTI ACCGGT 1 cut(s) 112
BshVI ATCGAT 1 cut(s) 462
BsiSI CCGG 2 cut(s) 113, 223
BslI CCNNNNNNNGG 2 cut(s) 557, 761
BsmAI GTCTC 3 cut(s) 121, 196, 278
BsnI GGCC 1 cut(s) 753
Bso31I GGTCTC 2 cut(s) 121, 196
Bsp119I TTCGAA 1 cut(s) 628
Bsp143I GATC 5 cut(s) 184, 318, 484, 569, 702
BspANI GGCC 1 cut(s) 753
BspCNI CTCAG 1 cut(s) 598
BspDI ATCGAT 1 cut(s) 462
BspFNI CGCG 1 cut(s) 778
BspPI GGATC 3 cut(s) 492, 577, 697
BspQI GCTCTTC 1 cut(s) 630
BspT104I TTCGAA 1 cut(s) 628
BspTNI GGTCTC 2 cut(s) 121, 196
BsrFI RCCGGY 1 cut(s) 112
BsrI ACTGG 3 cut(s) 195, 722, 766
BssAI RCCGGY 1 cut(s) 112
BssECI CCNNGG 1 cut(s) 98
BssMI GATC 5 cut(s) 184, 318, 484, 569, 702
Bst2UI CCWGG 2 cut(s) 431, 552
Bst6I CTCTTC 1 cut(s) 630
BstAPI GCANNNNNTGC 1 cut(s) 176
BstBI TTCGAA 1 cut(s) 628
BstC8I GCNNGC 2 cut(s) 147, 373
BstDEI CTNAG 1 cut(s) 606
BstDSI CCRYGG 1 cut(s) 98
BstENI CCTNNNNNAGG 1 cut(s) 555
BstF5I GGATG 1 cut(s) 360
BstFNI CGCG 1 cut(s) 778
BstHHI GCGC 2 cut(s) 67, 778
BstKTI GATC 5 cut(s) 187, 321, 487, 572, 705
BstMAI GTCTC 3 cut(s) 121, 196, 278
BstMBI GATC 5 cut(s) 184, 318, 484, 569, 702
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstNI CCWGG 2 cut(s) 431, 552
BstSCI CCNGG 2 cut(s) 429, 550
BstUI CGCG 1 cut(s) 778
BstX2I RGATCY 1 cut(s) 484
BstXI CCANNNNNNTGG 1 cut(s) 252
BstYI RGATCY 1 cut(s) 484
Bsu15I ATCGAT 1 cut(s) 462
BsuRI GGCC 1 cut(s) 753
BsuTUI ATCGAT 1 cut(s) 462
BtgI CCRYGG 1 cut(s) 98
BtsCI GGATG 1 cut(s) 360
Cac8I GCNNGC 2 cut(s) 147, 373
CaiI CAGNNNCTG 1 cut(s) 173
CfoI GCGC 2 cut(s) 67, 778
Cfr10I RCCGGY 1 cut(s) 112
Cfr13I GGNCC 3 cut(s) 237, 533, 752
ClaI ATCGAT 1 cut(s) 462
Csp6I GTAC 1 cut(s) 638
CspAI ACCGGT 1 cut(s) 112
CviQI GTAC 1 cut(s) 638
DdeI CTNAG 1 cut(s) 606
DpnI GATC 5 cut(s) 186, 320, 486, 571, 704
DpnII GATC 5 cut(s) 184, 318, 484, 569, 702
DraI TTTAAA 1 cut(s) 679
DraIII CACNNNGTG 1 cut(s) 619
Eam1104I CTCTTC 1 cut(s) 630
EarI CTCTTC 1 cut(s) 630
Eco31I GGTCTC 2 cut(s) 121, 196
Eco47I GGWCC 2 cut(s) 237, 533
EcoNI CCTNNNNNAGG 1 cut(s) 555
EcoRII CCWGG 2 cut(s) 429, 550
FaiI YATR 9 cut(s) 75, 137, 251, 253, 278, 515, 660, 665, 726
FbaI TGATCA 1 cut(s) 318
FokI GGATG 1 cut(s) 347
FspBI CTAG 2 cut(s) 329, 695
GlaI GCGC 2 cut(s) 66, 777
GsaI CCCAGC 1 cut(s) 65
GsuI CTGGAG 3 cut(s) 178, 509, 573
HaeIII GGCC 1 cut(s) 753
HapII CCGG 2 cut(s) 113, 223
HhaI GCGC 2 cut(s) 67, 778
Hin6I GCGC 2 cut(s) 65, 776
HinP1I GCGC 2 cut(s) 65, 776
HincII GTYRAC 2 cut(s) 6, 655
HindII GTYRAC 2 cut(s) 6, 655
HindIII AAGCTT 2 cut(s) 143, 589
HinfI GANTC 2 cut(s) 395, 610
HpaI GTTAAC 1 cut(s) 6
HpaII CCGG 2 cut(s) 113, 223
HphI GGTGA 3 cut(s) 36, 390, 428
Hpy166II GTNNAC 3 cut(s) 6, 598, 655
Hpy188I TCNGA 2 cut(s) 456, 505
Hpy188III TCNNGA 2 cut(s) 482, 488
Hpy8I GTNNAC 3 cut(s) 6, 598, 655
HpyAV CCTTC 3 cut(s) 51, 551, 555
HpyCH4V TGCA 6 cut(s) 179, 263, 311, 371, 724, 786
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpyF3I CTNAG 1 cut(s) 606
HspAI GCGC 2 cut(s) 65, 776
Ksp22I TGATCA 1 cut(s) 318
KspAI GTTAAC 1 cut(s) 6
Kzo9I GATC 5 cut(s) 184, 318, 484, 569, 702
LguI GCTCTTC 1 cut(s) 630
LmnI GCTCC 1 cut(s) 490
LweI GCATC 2 cut(s) 166, 722
MaeI CTAG 2 cut(s) 329, 695
MaeIII GTNAC 1 cut(s) 416
MalI GATC 5 cut(s) 186, 320, 486, 571, 704
MboI GATC 5 cut(s) 184, 318, 484, 569, 702
MboII GAAGA 2 cut(s) 316, 617
MfeI CAATTG 1 cut(s) 264
MflI RGATCY 1 cut(s) 484
MluCI AATT 6 cut(s) 33, 129, 264, 306, 436, 737
MlyI GAGTC 1 cut(s) 389
MmeI TCCRAC 2 cut(s) 103, 468
MnlI CCTC 8 cut(s) 27, 33, 57, 63, 63, 240, 386, 662
MseI TTAA 4 cut(s) 5, 336, 581, 678
MslI CAYNNNNRTG 1 cut(s) 250
MspI CCGG 2 cut(s) 113, 223
MspR9I CCNGG 2 cut(s) 431, 552
MunI CAATTG 1 cut(s) 264
MvaI CCWGG 2 cut(s) 431, 552
MvnI CGCG 1 cut(s) 778
MwoI GCNNNNNNNGC 1 cut(s) 176
NdeII GATC 5 cut(s) 184, 318, 484, 569, 702
NmuCI GTSAC 1 cut(s) 416
NspV TTCGAA 1 cut(s) 628
PciSI GCTCTTC 1 cut(s) 630
PfeI GAWTC 1 cut(s) 610
PflMI CCANNNNNTGG 1 cut(s) 761
PinAI ACCGGT 1 cut(s) 112
PleI GAGTC 1 cut(s) 389
PpsI GAGTC 1 cut(s) 389
Psp6I CCWGG 2 cut(s) 429, 550
PspFI CCCAGC 1 cut(s) 61
PspGI CCWGG 2 cut(s) 429, 550
PspPI GGNCC 3 cut(s) 237, 533, 752
PstNI CAGNNNCTG 1 cut(s) 173
PsuI RGATCY 1 cut(s) 484
RsaI GTAC 1 cut(s) 639
RsaNI GTAC 1 cut(s) 638
RseI CAYNNNNRTG 1 cut(s) 250
SapI GCTCTTC 1 cut(s) 630
SaqAI TTAA 4 cut(s) 5, 336, 581, 678
Sau3AI GATC 5 cut(s) 184, 318, 484, 569, 702
Sau96I GGNCC 3 cut(s) 237, 533, 752
SchI GAGTC 1 cut(s) 389
ScrFI CCNGG 2 cut(s) 431, 552
SfaNI GCATC 2 cut(s) 166, 722
SfuI TTCGAA 1 cut(s) 628
SinI GGWCC 2 cut(s) 237, 533
SmiMI CAYNNNNRTG 1 cut(s) 250
Sse9I AATT 6 cut(s) 33, 129, 264, 306, 436, 737
SspMI CTAG 2 cut(s) 329, 695
StyD4I CCNGG 2 cut(s) 429, 550
TaqI TCGA 3 cut(s) 157, 462, 628
TasI AATT 6 cut(s) 33, 129, 264, 306, 436, 737
TfiI GAWTC 1 cut(s) 610
Tru1I TTAA 4 cut(s) 5, 336, 581, 678
Tru9I TTAA 4 cut(s) 5, 336, 581, 678
TseFI GTSAC 1 cut(s) 416
Tsp45I GTSAC 1 cut(s) 416
TspGWI ACGGA 1 cut(s) 250
Van91I CCANNNNNTGG 1 cut(s) 761
VpaK11BI GGWCC 2 cut(s) 237, 533
XagI CCTNNNNNAGG 1 cut(s) 555
XapI RAATTY 1 cut(s) 436
XspI CTAG 2 cut(s) 329, 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.