MD11G1039100.v1.1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0015040
Physical Location & Seq
Reverse (-)
3325060 .. 3325860
801 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1039100.v1.1.491

Sequence Viewer

Length: 801 bp
ATGTCAGCCCATCCACCTCCACCGCCGTCCCCAATTCCACCTTCACCGCTACCTCAACCCCCGCCCCAACGGCATAGCAGACGCCCACCCCCATCTCAAAGGCCACCGACACCAATCTCCCTCAGCCAAATCATCATATCAAAGCGTGCTGCGAATGGAGAAGCTCCAGCACCTGATGCAGAAAACCTTATCTCAAGTAAACCGACAAAGCAAATAATACTCCGGCAACCTCAACGGACAAATCCGCTTGTATGGTGCTGTGCAATTGCGTGTCTCATATTTAGTGTTGTTCTTATTTTCTTTGGAATTGCGACTTTGATACTCTTCTTAGTTGTTAAACCAAAAACTCCATCGTTTGACATCCCCAATGCAAGCCTCAACACCATCTACTTCGACTCACCGGAATATTTCAACGGCGACTTCACCTTCCTCGCAAATTTCTCCAACCCTAATCGGAAACTCGATATAAGATTTGAGTATCTGGATTTGGAGCTTTTCTTTTCTGACAGGCTCATAGCAACTCAATCTCTTGCACCTTTCACACAAAGACCTGGAGAAGGAAGGGTGGGATCGGTTCGCTTGATATCGAGCTTGGTTTACCTTCCTGTCAATCACGCTGTGGCGCTTCAAACGCAGGTGCAGAACAATCAAGTTAACTACAATATGAGAGGAACATTTAAAGTGAGAGCCAGTCTAGGTATGATCCATTTTTCCTACTGGTTGCATAGCAGATGCCAATTACAGATGACAGGTCCGCCGAGGGGTGTTTTAGTTGCAAGAAGTTGCAAATCTAAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

267

Amino Acids

29.72

Weight (kDa)

10.18

Isoelectric Point (pI)

53.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 148 - 244 2.6e-06 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015040)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26490 AT5G56050
fragaria_vesca FvH4_3g42130
malus_domestica MD03G1038000.v1.1 MD11G1039100.v1.1
prunus_persica Prupe.6G029700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0075341
rosa_laevigata RLG00000036551
rosa_multiflora Rmu_sc0000770.1_g000034
rosa_roxburghii Rroxscaffold_1G00006190
rosa_rugosa Rorug05G0439000
rosa_samantha Rh5AG495400 Rh5BG517100 Rh5CG540700 Rh5DG532400
rosa_wichuraiana Rw5G045970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 625
Acc36I ACCTGC 1 cut(s) 625
AciI CCGC 5 cut(s) 23, 47, 62, 245, 755
AclWI GGATC 2 cut(s) 577, 697
AcsI RAATTY 1 cut(s) 436
AcyI GRCGYC 1 cut(s) 82
AdeI CACNNNGTG 1 cut(s) 619
AfiI CCNNNNNNNGG 2 cut(s) 557, 761
AgsI TTSAA 2 cut(s) 412, 629
AjnI CCWGG 1 cut(s) 550
AjuI GAANNNNNNNTTGG 2 cut(s) 25, 57
AluBI AGCT 3 cut(s) 164, 493, 591
AluI AGCT 3 cut(s) 164, 493, 591
Alw26I GTCTC 1 cut(s) 278
AlwI GGATC 2 cut(s) 577, 697
AlwNI CAGNNNCTG 1 cut(s) 173
AoxI GGCC 1 cut(s) 101
ApeKI GCWGC 1 cut(s) 149
ApoI RAATTY 1 cut(s) 436
AspLEI GCGC 1 cut(s) 625
AspS9I GGNCC 1 cut(s) 752
AsuHPI GGTGA 3 cut(s) 36, 390, 415
AvaII GGWCC 1 cut(s) 752
BbvCI CCTCAGC 1 cut(s) 122
BbvI GCAGC 1 cut(s) 136
BccI CCATC 4 cut(s) 18, 100, 358, 392
BceAI ACGGC 3 cut(s) 10, 86, 430
BciT130I CCWGG 1 cut(s) 552
BcoDI GTCTC 1 cut(s) 278
BfaI CTAG 1 cut(s) 695
BfoI RGCGCY 1 cut(s) 626
BfuAI ACCTGC 1 cut(s) 625
BglI GCCNNNNNGGC 1 cut(s) 70
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
Bme1390I CCNGG 1 cut(s) 552
Bme18I GGWCC 1 cut(s) 752
BmgT120I GGNCC 1 cut(s) 752
BmrFI CCNGG 1 cut(s) 552
BmsI GCATC 2 cut(s) 166, 722
BpmI CTGGAG 2 cut(s) 150, 573
Bpu10I CCTNAGC 1 cut(s) 122
BpuEI CTTGAG 1 cut(s) 178
BsaHI GRCGYC 1 cut(s) 82
BsaJI CCNNGG 1 cut(s) 758
BsaWI WCCGGW 1 cut(s) 400
Bsc4I CCNNNNNNNGG 2 cut(s) 557, 761
Bse1I ACTGG 2 cut(s) 690, 722
BseBI CCWGG 1 cut(s) 552
BseDI CCNNGG 1 cut(s) 758
BseGI GGATG 2 cut(s) 10, 360
BseLI CCNNNNNNNGG 2 cut(s) 557, 761
BseMII CTCAG 1 cut(s) 136
BseNI ACTGG 2 cut(s) 690, 722
BseXI GCAGC 1 cut(s) 136
BsgI GTGCAG 1 cut(s) 659
BshFI GGCC 1 cut(s) 103
BsiSI CCGG 2 cut(s) 223, 401
BslFI GGGAC 1 cut(s) 13
BslI CCNNNNNNNGG 2 cut(s) 557, 761
BsmAI GTCTC 1 cut(s) 278
BsmFI GGGAC 1 cut(s) 13
BsnI GGCC 1 cut(s) 103
Bsp143I GATC 2 cut(s) 569, 702
BspACI CCGC 5 cut(s) 23, 47, 62, 245, 755
BspANI GGCC 1 cut(s) 103
BspCNI CTCAG 1 cut(s) 135
BspMI ACCTGC 1 cut(s) 625
BspPI GGATC 2 cut(s) 577, 697
BsrI ACTGG 2 cut(s) 690, 722
BssECI CCNNGG 1 cut(s) 758
BssMI GATC 2 cut(s) 569, 702
BssNI GRCGYC 1 cut(s) 82
Bst2UI CCWGG 1 cut(s) 552
Bst6I CTCTTC 1 cut(s) 329
BstACI GRCGYC 1 cut(s) 82
BstAPI GCANNNNNTGC 1 cut(s) 176
BstC8I GCNNGC 2 cut(s) 147, 373
BstDEI CTNAG 2 cut(s) 122, 328
BstENI CCTNNNNNAGG 1 cut(s) 555
BstF5I GGATG 2 cut(s) 10, 360
BstH2I RGCGCY 1 cut(s) 626
BstHHI GCGC 1 cut(s) 625
BstKTI GATC 2 cut(s) 572, 705
BstMAI GTCTC 1 cut(s) 278
BstMBI GATC 2 cut(s) 569, 702
BstMWI GCNNNNNNNGC 3 cut(s) 70, 176, 631
BstNI CCWGG 1 cut(s) 552
BstSCI CCNGG 1 cut(s) 550
BstV1I GCAGC 1 cut(s) 136
BsuRI GGCC 1 cut(s) 103
BtsCI GGATG 2 cut(s) 10, 360
BveI ACCTGC 1 cut(s) 625
Cac8I GCNNGC 2 cut(s) 147, 373
CaiI CAGNNNCTG 1 cut(s) 173
CfoI GCGC 1 cut(s) 625
Cfr13I GGNCC 1 cut(s) 752
CseI GACGC 1 cut(s) 90
CviJI RGCY 9 cut(s) 8, 103, 126, 164, 375, 493, 511, 591, 689
CviKI_1 RGCY 9 cut(s) 8, 103, 126, 164, 375, 493, 511, 591, 689
DdeI CTNAG 2 cut(s) 122, 328
DpnI GATC 2 cut(s) 571, 704
DpnII GATC 2 cut(s) 569, 702
DraI TTTAAA 1 cut(s) 679
DraIII CACNNNGTG 1 cut(s) 619
Eam1104I CTCTTC 1 cut(s) 329
EarI CTCTTC 1 cut(s) 329
EciI GGCGGA 1 cut(s) 744
Eco32I GATATC 1 cut(s) 585
Eco47I GGWCC 1 cut(s) 752
EcoNI CCTNNNNNAGG 1 cut(s) 555
EcoRII CCWGG 1 cut(s) 550
EcoRV GATATC 1 cut(s) 585
FaiI YATR 9 cut(s) 75, 137, 253, 278, 467, 515, 665, 701, 726
FaqI GGGAC 1 cut(s) 13
FauI CCCGC 1 cut(s) 69
Fnu4HI GCNGC 1 cut(s) 150
FokI GGATG 1 cut(s) 347
Fsp4HI GCNGC 1 cut(s) 150
FspBI CTAG 1 cut(s) 695
GlaI GCGC 1 cut(s) 624
GluI GCNGC 1 cut(s) 150
GsuI CTGGAG 2 cut(s) 150, 573
HaeII RGCGCY 1 cut(s) 626
HaeIII GGCC 1 cut(s) 103
HapII CCGG 2 cut(s) 223, 401
HgaI GACGC 1 cut(s) 90
HhaI GCGC 1 cut(s) 625
Hin1I GRCGYC 1 cut(s) 82
Hin6I GCGC 1 cut(s) 623
HinP1I GCGC 1 cut(s) 623
HincII GTYRAC 1 cut(s) 655
HindII GTYRAC 1 cut(s) 655
HinfI GANTC 1 cut(s) 395
HpaI GTTAAC 1 cut(s) 655
HpaII CCGG 2 cut(s) 223, 401
HphI GGTGA 3 cut(s) 36, 390, 415
Hpy166II GTNNAC 3 cut(s) 200, 598, 655
Hpy188I TCNGA 2 cut(s) 456, 505
Hpy188III TCNNGA 1 cut(s) 482
Hpy8I GTNNAC 3 cut(s) 200, 598, 655
HpyAV CCTTC 5 cut(s) 51, 436, 551, 555, 611
HpyCH4V TGCA 8 cut(s) 179, 263, 371, 533, 640, 724, 776, 786
HpyF10VI GCNNNNNNNGC 3 cut(s) 70, 176, 631
HpyF3I CTNAG 2 cut(s) 122, 328
Hsp92I GRCGYC 1 cut(s) 82
HspAI GCGC 1 cut(s) 623
KspAI GTTAAC 1 cut(s) 655
Kzo9I GATC 2 cut(s) 569, 702
LmnI GCTCC 2 cut(s) 169, 490
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 2 cut(s) 166, 722
MaeI CTAG 1 cut(s) 695
MalI GATC 2 cut(s) 571, 704
MboI GATC 2 cut(s) 569, 702
MboII GAAGA 1 cut(s) 316
MfeI CAATTG 1 cut(s) 264
MluCI AATT 5 cut(s) 33, 264, 306, 436, 737
MlyI GAGTC 1 cut(s) 389
MmeI TCCRAC 1 cut(s) 468
MnlI CCTC 8 cut(s) 27, 63, 131, 240, 386, 440, 662, 753
MseI TTAA 3 cut(s) 336, 654, 678
MspI CCGG 2 cut(s) 223, 401
MspR9I CCNGG 1 cut(s) 552
MunI CAATTG 1 cut(s) 264
MvaI CCWGG 1 cut(s) 552
MwoI GCNNNNNNNGC 3 cut(s) 70, 176, 631
NdeII GATC 2 cut(s) 569, 702
NmeAIII GCCGAG 1 cut(s) 783
PaqCI CACCTGC 1 cut(s) 625
PkrI GCNGC 1 cut(s) 151
PleI GAGTC 1 cut(s) 389
PpsI GAGTC 1 cut(s) 389
Psp6I CCWGG 1 cut(s) 550
PspGI CCWGG 1 cut(s) 550
PspPI GGNCC 1 cut(s) 752
PstNI CAGNNNCTG 1 cut(s) 173
SaqAI TTAA 3 cut(s) 336, 654, 678
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 2 cut(s) 569, 702
Sau96I GGNCC 1 cut(s) 752
SchI GAGTC 1 cut(s) 389
ScrFI CCNGG 1 cut(s) 552
SfaNI GCATC 2 cut(s) 166, 722
SinI GGWCC 1 cut(s) 752
SmlI CTYRAG 1 cut(s) 193
SmoI CTYRAG 1 cut(s) 193
Sse9I AATT 5 cut(s) 33, 264, 306, 436, 737
SsiI CCGC 5 cut(s) 23, 47, 62, 245, 755
SspI AATATT 1 cut(s) 407
SspMI CTAG 1 cut(s) 695
StyD4I CCNGG 1 cut(s) 550
TaqI TCGA 3 cut(s) 393, 462, 587
TasI AATT 5 cut(s) 33, 264, 306, 436, 737
Tru1I TTAA 3 cut(s) 336, 654, 678
Tru9I TTAA 3 cut(s) 336, 654, 678
TseI GCWGC 1 cut(s) 149
TspGWI ACGGA 1 cut(s) 250
VpaK11BI GGWCC 1 cut(s) 752
XagI CCTNNNNNAGG 1 cut(s) 555
XapI RAATTY 1 cut(s) 436
XspI CTAG 1 cut(s) 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.