FvH4_3g42130

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015040
Physical Location & Seq
Forward (+)
35198936 .. 35199860
925 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g42130.t1

Sequence Viewer

Length: 843 bp
ATGGCACTATCCCTCAATCAAAAGCTTCTTTTCCTTTTACTTGCTTTAACCAACTTCCTGATGCTACCCCTTCCCCCTCCACCTGCATCTCCAATACCACCTTCACCACTACTACAAGCCCAAAGGCAAACTAAACCGCTCTCTCTGAATCAAATCATCACAAAGTATGCTCAGAACCAAGATGCTCTGGTGCCCGCAGCTCTGGTGCCCGCAGCGGCCAATCATGAATCCAGAAAATCAGAAAAGCAACCAATGCTCTGGCCACCTCAGGGTCGACGGACAAATCCACTTATATGGTGCGGTGCAATAGTATGTCTCATATTCAGCCTTATTCTTATCTTCTTTGGAATTACAACTTTGATCATCTTCCTTGTTGTTAGACCTAGAATACCACTGTTCGACATCCCTAATGCAAAGCTCAGCACCATCTACTTTGACTCACCAGAGTATTTCAATGGTGACTTCGCTTTCCTGGCAAATTTCTCCAACCCAAATCGGAAAATAGATGTAAGATTTGAGTATCTGCAGATGGAACTTTACTTTTCTGATAGGCTCATAGCAATTCAGTCTCTTGACCCTTTCACTCAAAGACCTCGAGAAGGAAGGCTGGAAGCAGTTCACTTGGTATCGAGCTTGGTTTACTTACCTCAGAATCACGCTCTGGCGCTTCGAACCCAGGTGCAGAACAATCGAGTCGAGTATAATATAAGAGGAACATATAAAGTGAGAGCCAGTCTGGGAATGATCCACTTTTCTTACTGGTTGCACAGCAGATGCCAATTACAGATGACAGGTCCACCGACTGGTGTTTTAGTTGGCCGAAGTTGCAGAACCAAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

281

Amino Acids

31.87

Weight (kDa)

10.01

Isoelectric Point (pI)

43.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 162 - 258 2.6e-07 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015040)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26490 AT5G56050
fragaria_vesca FvH4_3g42130
malus_domestica MD03G1038000.v1.1 MD11G1039100.v1.1
prunus_persica Prupe.6G029700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0075341
rosa_laevigata RLG00000036551
rosa_multiflora Rmu_sc0000770.1_g000034
rosa_roxburghii Rroxscaffold_1G00006190
rosa_rugosa Rorug05G0439000
rosa_samantha Rh5AG495400 Rh5BG517100 Rh5CG540700 Rh5DG532400
rosa_wichuraiana Rw5G045970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 91
Acc36I ACCTGC 1 cut(s) 91
AccB1I GGYRCC 2 cut(s) 190, 205
AccB7I CCANNNNNTGG 1 cut(s) 803
AccBSI CCGCTC 1 cut(s) 139
AccI GTMKAC 1 cut(s) 274
AciI CCGC 5 cut(s) 137, 195, 210, 215, 300
AclWI GGATC 1 cut(s) 739
AcoI YGGCCR 3 cut(s) 216, 260, 817
AcsI RAATTY 1 cut(s) 478
AfiI CCNNNNNNNGG 3 cut(s) 269, 599, 803
AgsI TTSAA 1 cut(s) 454
AjnI CCWGG 2 cut(s) 471, 675
AjuI GAANNNNNNNTTGG 2 cut(s) 85, 117
AluBI AGCT 4 cut(s) 25, 200, 418, 633
AluI AGCT 4 cut(s) 25, 200, 418, 633
Alw26I GTCTC 2 cut(s) 320, 573
AlwI GGATC 1 cut(s) 739
Ama87I CYCGRG 1 cut(s) 594
AoxI GGCC 3 cut(s) 216, 260, 817
ApeKI GCWGC 2 cut(s) 197, 212
ApoI RAATTY 1 cut(s) 478
Asp700I GAANNNNTTC 1 cut(s) 615
AspLEI GCGC 1 cut(s) 667
AspS9I GGNCC 1 cut(s) 794
AsuHPI GGTGA 3 cut(s) 96, 432, 470
AsuII TTCGAA 1 cut(s) 670
AvaI CYCGRG 1 cut(s) 594
AvaII GGWCC 1 cut(s) 794
AxyI CCTNAGG 1 cut(s) 267
BaeGI GKGCMC 2 cut(s) 195, 210
BalI TGGCCA 1 cut(s) 262
BanI GGYRCC 2 cut(s) 190, 205
BbvI GCAGC 2 cut(s) 209, 224
BccI CCATC 2 cut(s) 434, 523
BcgI CGANNNNNNTGC 2 cut(s) 671, 705
BciT130I CCWGG 2 cut(s) 473, 677
BclI TGATCA 1 cut(s) 360
BcoDI GTCTC 2 cut(s) 320, 573
BfaI CTAG 1 cut(s) 384
BfmI CTRYAG 1 cut(s) 524
BfoI RGCGCY 1 cut(s) 668
BfuAI ACCTGC 1 cut(s) 91
BisI GCNGC 3 cut(s) 198, 213, 216
BlpI GCTNAGC 1 cut(s) 419
BlsI GCNGC 3 cut(s) 199, 214, 217
Bme1390I CCNGG 2 cut(s) 473, 677
Bme18I GGWCC 1 cut(s) 794
BmeT110I CYCGRG 1 cut(s) 594
BmgT120I GGNCC 1 cut(s) 794
BmiI GGNNCC 2 cut(s) 192, 207
BmrFI CCNGG 2 cut(s) 473, 677
BmsI GCATC 4 cut(s) 51, 95, 172, 764
Bpu1102I GCTNAGC 1 cut(s) 419
Bpu14I TTCGAA 1 cut(s) 670
BsaJI CCNNGG 1 cut(s) 675
Bsc4I CCNNNNNNNGG 3 cut(s) 269, 599, 803
Bse1I ACTGG 3 cut(s) 732, 764, 808
Bse21I CCTNAGG 1 cut(s) 267
BseBI CCWGG 2 cut(s) 473, 677
BseDI CCNNGG 1 cut(s) 675
BseGI GGATG 1 cut(s) 402
BseLI CCNNNNNNNGG 3 cut(s) 269, 599, 803
BseMII CTCAG 4 cut(s) 185, 281, 433, 662
BseNI ACTGG 3 cut(s) 732, 764, 808
BseSI GKGCMC 2 cut(s) 195, 210
BseXI GCAGC 2 cut(s) 209, 224
BsgI GTGCAG 1 cut(s) 701
BshFI GGCC 3 cut(s) 218, 262, 819
BshNI GGYRCC 2 cut(s) 190, 205
BsiHKCI CYCGRG 1 cut(s) 594
BslI CCNNNNNNNGG 3 cut(s) 269, 599, 803
BsmAI GTCTC 2 cut(s) 320, 573
BsnI GGCC 3 cut(s) 218, 262, 819
BsoBI CYCGRG 1 cut(s) 594
Bsp119I TTCGAA 1 cut(s) 670
Bsp1286I GDGCHC 2 cut(s) 195, 210
Bsp143I GATC 2 cut(s) 360, 744
Bsp1720I GCTNAGC 1 cut(s) 419
BspACI CCGC 5 cut(s) 137, 195, 210, 215, 300
BspANI GGCC 3 cut(s) 218, 262, 819
BspCNI CTCAG 4 cut(s) 184, 280, 432, 661
BspHI TCATGA 1 cut(s) 223
BspLI GGNNCC 2 cut(s) 192, 207
BspMAI CTGCAG 1 cut(s) 528
BspMI ACCTGC 1 cut(s) 91
BspPI GGATC 1 cut(s) 739
BspT104I TTCGAA 1 cut(s) 670
BspT107I GGYRCC 2 cut(s) 190, 205
BsrBI CCGCTC 1 cut(s) 139
BsrI ACTGG 3 cut(s) 732, 764, 808
BssECI CCNNGG 1 cut(s) 675
BssMI GATC 2 cut(s) 360, 744
Bst2UI CCWGG 2 cut(s) 473, 677
Bst4CI ACNGT 1 cut(s) 396
BstAPI GCANNNNNTGC 1 cut(s) 253
BstBI TTCGAA 1 cut(s) 670
BstC8I GCNNGC 2 cut(s) 195, 210
BstDEI CTNAG 4 cut(s) 171, 267, 419, 648
BstENI CCTNNNNNAGG 1 cut(s) 597
BstF5I GGATG 1 cut(s) 402
BstH2I RGCGCY 1 cut(s) 668
BstHHI GCGC 1 cut(s) 667
BstKTI GATC 2 cut(s) 363, 747
BstMAI GTCTC 2 cut(s) 320, 573
BstMBI GATC 2 cut(s) 360, 744
BstMWI GCNNNNNNNGC 3 cut(s) 253, 473, 825
BstNI CCWGG 2 cut(s) 473, 677
BstSCI CCNGG 2 cut(s) 471, 675
BstSFI CTRYAG 1 cut(s) 524
BstSLI GKGCMC 2 cut(s) 195, 210
BstV1I GCAGC 2 cut(s) 209, 224
BstXI CCANNNNNNTGG 2 cut(s) 258, 294
Bsu36I CCTNAGG 1 cut(s) 267
BsuRI GGCC 3 cut(s) 218, 262, 819
BtsCI GGATG 1 cut(s) 402
BtsIMutI CAGTG 1 cut(s) 392
BveI ACCTGC 1 cut(s) 91
Cac8I GCNNGC 2 cut(s) 195, 210
CciI TCATGA 1 cut(s) 223
CfoI GCGC 1 cut(s) 667
Cfr13I GGNCC 1 cut(s) 794
CviAII CATG 1 cut(s) 224
DdeI CTNAG 4 cut(s) 171, 267, 419, 648
DpnI GATC 2 cut(s) 362, 746
DpnII GATC 2 cut(s) 360, 744
EaeI YGGCCR 3 cut(s) 216, 260, 817
Eco47I GGWCC 1 cut(s) 794
Eco81I CCTNAGG 1 cut(s) 267
Eco88I CYCGRG 1 cut(s) 594
EcoNI CCTNNNNNAGG 1 cut(s) 597
EcoRII CCWGG 2 cut(s) 471, 675
FaeI CATG 1 cut(s) 227
FatI CATG 1 cut(s) 223
FauI CCCGC 2 cut(s) 202, 217
FbaI TGATCA 1 cut(s) 360
FblI GTMKAC 1 cut(s) 274
Fnu4HI GCNGC 3 cut(s) 198, 213, 216
FokI GGATG 1 cut(s) 389
Fsp4HI GCNGC 3 cut(s) 198, 213, 216
FspBI CTAG 1 cut(s) 384
GlaI GCGC 1 cut(s) 666
GluI GCNGC 3 cut(s) 198, 213, 216
HaeII RGCGCY 1 cut(s) 668
HaeIII GGCC 3 cut(s) 218, 262, 819
HhaI GCGC 1 cut(s) 667
Hin1II CATG 1 cut(s) 227
Hin6I GCGC 1 cut(s) 665
HinP1I GCGC 1 cut(s) 665
HincII GTYRAC 1 cut(s) 275
HindII GTYRAC 1 cut(s) 275
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 5 cut(s) 148, 227, 437, 652, 693
HphI GGTGA 3 cut(s) 96, 432, 470
Hpy166II GTNNAC 4 cut(s) 275, 619, 640, 797
Hpy188I TCNGA 6 cut(s) 147, 174, 241, 498, 547, 651
Hpy188III TCNNGA 5 cut(s) 58, 224, 231, 572, 596
Hpy8I GTNNAC 4 cut(s) 275, 619, 640, 797
Hpy99I CGWCG 1 cut(s) 279
HpyAV CCTTC 4 cut(s) 80, 111, 593, 597
HpyCH4III ACNGT 1 cut(s) 396
HpyCH4V TGCA 7 cut(s) 86, 305, 413, 526, 682, 766, 828
HpyF10VI GCNNNNNNNGC 3 cut(s) 253, 473, 825
HpyF3I CTNAG 4 cut(s) 171, 267, 419, 648
Hsp92II CATG 1 cut(s) 227
HspAI GCGC 1 cut(s) 665
Ksp22I TGATCA 1 cut(s) 360
Kzo9I GATC 2 cut(s) 360, 744
Lsp1109I GCAGC 2 cut(s) 209, 224
LweI GCATC 4 cut(s) 51, 95, 172, 764
MaeI CTAG 1 cut(s) 384
MaeIII GTNAC 1 cut(s) 458
MalI GATC 2 cut(s) 362, 746
MbiI CCGCTC 1 cut(s) 139
MboI GATC 2 cut(s) 360, 744
MboII GAAGA 2 cut(s) 331, 358
MhlI GDGCHC 2 cut(s) 195, 210
MlsI TGGCCA 1 cut(s) 262
MluCI AATT 4 cut(s) 348, 478, 561, 779
MluNI TGGCCA 1 cut(s) 262
MlyI GAGTC 2 cut(s) 431, 702
MmeI TCCRAC 1 cut(s) 510
MnlI CCTC 6 cut(s) 23, 87, 276, 603, 657, 704
Mox20I TGGCCA 1 cut(s) 262
MroXI GAANNNNTTC 1 cut(s) 615
MscI TGGCCA 1 cut(s) 262
MseI TTAA 1 cut(s) 47
MslI CAYNNNNRTG 1 cut(s) 292
Msp20I TGGCCA 1 cut(s) 262
MspA1I CMGCKG 1 cut(s) 215
MspR9I CCNGG 2 cut(s) 473, 677
MvaI CCWGG 2 cut(s) 473, 677
MwoI GCNNNNNNNGC 3 cut(s) 253, 473, 825
NdeII GATC 2 cut(s) 360, 744
NlaIII CATG 1 cut(s) 227
NlaIV GGNNCC 2 cut(s) 192, 207
NmuCI GTSAC 1 cut(s) 458
NspV TTCGAA 1 cut(s) 670
PaeR7I CTCGAG 1 cut(s) 594
PagI TCATGA 1 cut(s) 223
PaqCI CACCTGC 1 cut(s) 91
PdmI GAANNNNTTC 1 cut(s) 615
PfeI GAWTC 3 cut(s) 148, 227, 652
PflMI CCANNNNNTGG 1 cut(s) 803
PkrI GCNGC 3 cut(s) 199, 214, 217
PleI GAGTC 2 cut(s) 431, 701
PpsI GAGTC 2 cut(s) 431, 701
Psp6I CCWGG 2 cut(s) 471, 675
PspGI CCWGG 2 cut(s) 471, 675
PspN4I GGNNCC 2 cut(s) 192, 207
PspPI GGNCC 1 cut(s) 794
PstI CTGCAG 1 cut(s) 528
RseI CAYNNNNRTG 1 cut(s) 292
SalI GTCGAC 1 cut(s) 273
SaqAI TTAA 1 cut(s) 47
SatI GCNGC 3 cut(s) 198, 213, 216
Sau3AI GATC 2 cut(s) 360, 744
Sau96I GGNCC 1 cut(s) 794
SchI GAGTC 2 cut(s) 431, 702
ScrFI CCNGG 2 cut(s) 473, 677
SduI GDGCHC 2 cut(s) 195, 210
SfaNI GCATC 4 cut(s) 51, 95, 172, 764
SfcI CTRYAG 1 cut(s) 524
Sfr274I CTCGAG 1 cut(s) 594
SfuI TTCGAA 1 cut(s) 670
SinI GGWCC 1 cut(s) 794
SlaI CTCGAG 1 cut(s) 594
SmiMI CAYNNNNRTG 1 cut(s) 292
SmlI CTYRAG 1 cut(s) 594
SmoI CTYRAG 1 cut(s) 594
Sse9I AATT 4 cut(s) 348, 478, 561, 779
SsiI CCGC 5 cut(s) 137, 195, 210, 215, 300
SspMI CTAG 1 cut(s) 384
StyD4I CCNGG 2 cut(s) 471, 675
TaaI ACNGT 1 cut(s) 396
TaqI TCGA 7 cut(s) 274, 399, 595, 629, 670, 691, 696
TasI AATT 4 cut(s) 348, 478, 561, 779
TauI GCSGC 1 cut(s) 218
TfiI GAWTC 3 cut(s) 148, 227, 652
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TscAI CASTG 1 cut(s) 399
TseFI GTSAC 1 cut(s) 458
TseI GCWGC 2 cut(s) 197, 212
Tsp45I GTSAC 1 cut(s) 458
TspDTI ATGAA 1 cut(s) 240
TspGWI ACGGA 1 cut(s) 292
TspRI CASTG 1 cut(s) 399
Van91I CCANNNNNTGG 1 cut(s) 803
VpaK11BI GGWCC 1 cut(s) 794
XagI CCTNNNNNAGG 1 cut(s) 597
XapI RAATTY 1 cut(s) 478
XhoI CTCGAG 1 cut(s) 594
XmiI GTMKAC 1 cut(s) 274
XmnI GAANNNNTTC 1 cut(s) 615
XspI CTAG 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.