Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011204

Physical Location & Seq

Genomic Coordinates Forward (+)

13571813 .. 13573070

Gene Structure 1258 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G27030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCTGTATCACTTCCAACCAAGTACCCTCTACGACCTATCACCAACATCCCAAAAAGCCACCGTCCCTCGCTTCTCCGTGTACGTGTCACCTGCTCTGTTACTACCACCAAGCCTCAGCCTAATCGTGAGAAGCTTCTGGTAGAGCAACGCACTGTGAATCTTCCTCTGTCCAACGACCAATCTCTGCAATCGACCAAGCCTCGCCCTAACCGTGAGAAGCTTGTGGTTGAGCAACGCCTTGCCAGCCCTCCTCTGTCCAATGACCCAACTTTGAAATCGACATGGACTCACCGGTTATGGGTTGCAGCGGGCTGCACCACTTTGTTTGTCTCTTTAGCTAAATCTGTCATTGGAGGGTTTGATTCTCATCTCTGCCTCGAACCAGCTTTAGCCGGTTATGCAGGGTACATCTTAGCTGATCTAGGTTCCGGTGTCTACCACTGGGCCATTGATAACTACGGTGATGAGTCAACACCTGTAGTAGGAACCCAAATCGAAGCATTTCAGGGTCACCACAAGTGGCCTTGGACAATCACCAGACGGCAATTTGCCAACAATCTACACGCTCTGGCTCAAGTCATAACCTTCACAGTTCTTCCACTAGACCTTGCATTTAACGACCCTGTGTTTCACGGCTTTGTGTGCACATTTGCATTTTGCATATTGTTTAGCCAGCAATTCCATGCTTGGGCACATGGAACCAAGAGCAAGCTTCCACCTCTCGTGGTCGCGTTGCAGGACATGGGGTTACTTGTTTCACGGAGACAGCATGCGGAACATCATCGAGCACCGTATAACAACAATTACTGCATCGTGAGTGGAGCATGGAACAATGTTCTGGATGAGAGTAAGGTCTTTGAGGCATTGGAGATGGTGTTTTATTTCCAGCTTGGGGTGAGACCTAGGTCATGGAGTGAGCCAAACTCTGACTGGATAGAAGAAACCGAAATCTCCAACAACCAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006464 GO:0006508 GO:0006511 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009057 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009941 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016053 GO:0016491 GO:0016567 GO:0016705 GO:0016740 GO:0019538 GO:0019637 GO:0019752 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0030433 GO:0031090 GO:0031625 GO:0031967 GO:0031969 GO:0031975 GO:0032446 GO:0032787 GO:0033554 GO:0033559 GO:0034976 GO:0036211 GO:0036503 GO:0042170 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044281 GO:0044283 GO:0044389 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046471 GO:0046486 GO:0050896 GO:0051603 GO:0051716 GO:0052637 GO:0055114 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0072330 GO:0080167 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901698

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM189_B_dmain

Protein Analysis

323

Amino Acids

36.38

Weight (kDa)

8.5

Isoelectric Point (pI)

46.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipid_desat	PF10520	137 - 305	1e-73	Lipid desaturase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27030
fragaria_vesca	FvH4_3g22400
malus_domestica	MD03G1205300.v1.1 MD11G1221200.v1.1
prunus_persica	Prupe.4G210500_v2.0.a1 Prupe.4G210600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0039071
rosa_laevigata	RLG00000033888 RLG00000033890 RLG00000033891
rosa_multiflora	Rmu_co8409277.1_g000001 Rmu_sc0000533.1_g000033 Rmu_sc0007753.1_g000004
rosa_roxburghii	Rroxscaffold_1G00042040
rosa_rugosa	Rorug05G0176300
rosa_samantha	Rh5AG262700 Rh5BG267500 Rh5CG300200 Rh5DG273900
rosa_wichuraiana	Rw5G024560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	101
Acc36I	ACCTGC	1 cut(s)	101
AccI	GTMKAC	1 cut(s)	438
AccII	CGCG	1 cut(s)	734
AciI	CCGC	2 cut(s)	311, 776
AfaI	GTAC	3 cut(s)	26, 84, 410
AfiI	CCNNNNNNNGG	4 cut(s)	301, 485, 691, 895
AflIII	ACRYGT	1 cut(s)	85
AgeI	ACCGGT	1 cut(s)	294
AgsI	TTSAA	1 cut(s)	277
AluBI	AGCT	7 cut(s)	136, 223, 341, 389, 419, 715, 892
AluI	AGCT	7 cut(s)	136, 223, 341, 389, 419, 715, 892
Alw21I	GWGCWC	2 cut(s)	650, 793
Alw26I	GTCTC	3 cut(s)	337, 760, 895
Alw44I	GTGCAC	1 cut(s)	646
AoxI	GGCC	2 cut(s)	447, 524
ApaLI	GTGCAC	1 cut(s)	646
ApeKI	GCWGC	2 cut(s)	308, 315
AsiGI	ACCGGT	1 cut(s)	294
Asp700I	GAANNNNTTC	1 cut(s)	504
AspA2I	CCTAGG	1 cut(s)	905
AspS9I	GGNCC	1 cut(s)	447
AsuHPI	GGTGA	7 cut(s)	34, 82, 284, 476, 506, 529, 910
AvrII	CCTAGG	1 cut(s)	905
BaeGI	GKGCMC	2 cut(s)	650, 697
BauI	CACGAG	1 cut(s)	725
Bbv12I	GWGCWC	2 cut(s)	650, 793
BbvCI	CCTCAGC	1 cut(s)	117
BbvI	GCAGC	2 cut(s)	302, 320
BccI	CCATC	1 cut(s)	868
BceAI	ACGGC	2 cut(s)	560, 652
BcoDI	GTCTC	3 cut(s)	337, 760, 895
BfaI	CTAG	3 cut(s)	425, 605, 906
BfmI	CTRYAG	1 cut(s)	480
BfuAI	ACCTGC	1 cut(s)	101
BisI	GCNGC	2 cut(s)	309, 316
BlnI	CCTAGG	1 cut(s)	905
BlsI	GCNGC	2 cut(s)	310, 317
BmgT120I	GGNCC	1 cut(s)	447
BmiI	GGNNCC	3 cut(s)	430, 490, 703
BmrI	ACTGGG	1 cut(s)	454
BmsI	GCATC	1 cut(s)	822
BmuI	ACTGGG	1 cut(s)	454
BoxI	GACNNNNGTC	1 cut(s)	907
BplI	GAGNNNNNCTC	2 cut(s)	911, 943
Bpu10I	CCTNAGC	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	561
BsaAI	YACGTR	1 cut(s)	86
BsaBI	GATNNNNATC	1 cut(s)	369
BsaI	GGTCTC	1 cut(s)	895
BsaJI	CCNNGG	2 cut(s)	527, 905
BsaWI	WCCGGW	2 cut(s)	294, 431
BsaXI	ACNNNNNCTCC	2 cut(s)	863, 893
Bsc4I	CCNNNNNNNGG	4 cut(s)	301, 485, 691, 895
Bse118I	RCCGGY	2 cut(s)	294, 395
Bse1I	ACTGG	2 cut(s)	449, 938
Bse8I	GATNNNNATC	1 cut(s)	369
BseDI	CCNNGG	2 cut(s)	527, 905
BseGI	GGATG	2 cut(s)	48, 850
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	4 cut(s)	301, 485, 691, 895
BseMII	CTCAG	1 cut(s)	131
BseNI	ACTGG	2 cut(s)	449, 938
BseRI	GAGGAG	1 cut(s)	243
BseSI	GKGCMC	2 cut(s)	650, 697
BseXI	GCAGC	2 cut(s)	302, 320
BsgI	GTGCAG	1 cut(s)	301
Bsh1236I	CGCG	1 cut(s)	734
BshFI	GGCC	2 cut(s)	449, 526
BshTI	ACCGGT	1 cut(s)	294
BsiHKAI	GWGCWC	2 cut(s)	650, 793
BsiSI	CCGG	3 cut(s)	295, 396, 432
BslFI	GGGAC	1 cut(s)	51
BslI	CCNNNNNNNGG	4 cut(s)	301, 485, 691, 895
BsmAI	GTCTC	3 cut(s)	337, 760, 895
BsmFI	GGGAC	1 cut(s)	51
BsnI	GGCC	2 cut(s)	449, 526
Bso31I	GGTCTC	1 cut(s)	895
Bsp1286I	GDGCHC	3 cut(s)	650, 697, 793
Bsp143I	GATC	1 cut(s)	421
BspACI	CCGC	2 cut(s)	311, 776
BspANI	GGCC	2 cut(s)	449, 526
BspCNI	CTCAG	1 cut(s)	130
BspFNI	CGCG	1 cut(s)	734
BspLI	GGNNCC	3 cut(s)	430, 490, 703
BspMI	ACCTGC	1 cut(s)	101
BspTNI	GGTCTC	1 cut(s)	895
BsrFI	RCCGGY	2 cut(s)	294, 395
BsrI	ACTGG	2 cut(s)	449, 938
BssAI	RCCGGY	2 cut(s)	294, 395
BssECI	CCNNGG	2 cut(s)	527, 905
BssMI	GATC	1 cut(s)	421
BssSI	CACGAG	1 cut(s)	725
BssT1I	CCWWGG	2 cut(s)	527, 905
Bst2BI	CACGAG	1 cut(s)	725
Bst4CI	ACNGT	6 cut(s)	65, 157, 215, 464, 595, 795
BstBAI	YACGTR	1 cut(s)	86
BstC8I	GCNNGC	5 cut(s)	247, 313, 677, 713, 774
BstDEI	CTNAG	2 cut(s)	117, 415
BstEII	GGTNACC	1 cut(s)	512
BstENI	CCTNNNNNAGG	1 cut(s)	483
BstF5I	GGATG	2 cut(s)	48, 850
BstFNI	CGCG	1 cut(s)	734
BstKTI	GATC	1 cut(s)	424
BstMAI	GTCTC	3 cut(s)	337, 760, 895
BstMBI	GATC	1 cut(s)	421
BstMWI	GCNNNNNNNGC	3 cut(s)	246, 401, 645
BstNSI	RCATGY	1 cut(s)	776
BstPAI	GACNNNNGTC	1 cut(s)	907
BstPI	GGTNACC	1 cut(s)	512
BstSFI	CTRYAG	1 cut(s)	480
BstSLI	GKGCMC	2 cut(s)	650, 697
BstUI	CGCG	1 cut(s)	734
BstV1I	GCAGC	2 cut(s)	302, 320
BsuRI	GGCC	2 cut(s)	449, 526
BtsCI	GGATG	2 cut(s)	48, 850
BtsIMutI	CAGTG	2 cut(s)	153, 442
BveI	ACCTGC	1 cut(s)	101
Cac8I	GCNNGC	5 cut(s)	247, 313, 677, 713, 774
Cfr10I	RCCGGY	2 cut(s)	294, 395
Cfr13I	GGNCC	1 cut(s)	447
Csp6I	GTAC	3 cut(s)	25, 83, 409
CspAI	ACCGGT	1 cut(s)	294
CspCI	CAANNNNNGTGG	2 cut(s)	310, 345
CviAII	CATG	7 cut(s)	285, 686, 698, 745, 773, 828, 912
CviQI	GTAC	3 cut(s)	25, 83, 409
DdeI	CTNAG	2 cut(s)	117, 415
DpnI	GATC	1 cut(s)	423
DpnII	GATC	1 cut(s)	421
Eco130I	CCWWGG	2 cut(s)	527, 905
Eco31I	GGTCTC	1 cut(s)	895
Eco91I	GGTNACC	1 cut(s)	512
EcoNI	CCTNNNNNAGG	1 cut(s)	483
EcoO65I	GGTNACC	1 cut(s)	512
EcoT14I	CCWWGG	2 cut(s)	527, 905
ErhI	CCWWGG	2 cut(s)	527, 905
FaeI	CATG	7 cut(s)	288, 689, 701, 748, 776, 831, 915
FaqI	GGGAC	1 cut(s)	51
FatI	CATG	7 cut(s)	284, 685, 697, 744, 772, 827, 911
FauI	CCCGC	1 cut(s)	304
FblI	GTMKAC	1 cut(s)	438
Fnu4HI	GCNGC	2 cut(s)	309, 316
FokI	GGATG	2 cut(s)	35, 857
Fsp4HI	GCNGC	2 cut(s)	309, 316
FspBI	CTAG	3 cut(s)	425, 605, 906
GluI	GCNGC	2 cut(s)	309, 316
HaeIII	GGCC	2 cut(s)	449, 526
HapII	CCGG	3 cut(s)	295, 396, 432
Hin1II	CATG	7 cut(s)	288, 689, 701, 748, 776, 831, 915
HincII	GTYRAC	1 cut(s)	474
HindII	GTYRAC	1 cut(s)	474
HindIII	AAGCTT	3 cut(s)	134, 221, 713
HinfI	GANTC	4 cut(s)	160, 289, 365, 470
HpaII	CCGG	3 cut(s)	295, 396, 432
HphI	GGTGA	7 cut(s)	34, 82, 284, 476, 506, 529, 910
Hpy166II	GTNNAC	4 cut(s)	83, 439, 474, 648
Hpy188I	TCNGA	1 cut(s)	931
Hpy188III	TCNNGA	3 cut(s)	128, 817, 842
Hpy8I	GTNNAC	4 cut(s)	83, 439, 474, 648
HpyAV	CCTTC	1 cut(s)	598
HpyCH4III	ACNGT	6 cut(s)	65, 157, 215, 464, 595, 795
HpyCH4IV	ACGT	1 cut(s)	85
HpyF10VI	GCNNNNNNNGC	3 cut(s)	246, 401, 645
HpyF3I	CTNAG	2 cut(s)	117, 415
HpySE526I	ACGT	1 cut(s)	85
Hsp92II	CATG	7 cut(s)	288, 689, 701, 748, 776, 831, 915
Kzo9I	GATC	1 cut(s)	421
LmnI	GCTCC	1 cut(s)	824
Lsp1109I	GCAGC	2 cut(s)	302, 320
LweI	GCATC	1 cut(s)	822
MaeI	CTAG	3 cut(s)	425, 605, 906
MaeII	ACGT	1 cut(s)	85
MaeIII	GTNAC	4 cut(s)	88, 100, 512, 750
MalI	GATC	1 cut(s)	423
MboI	GATC	1 cut(s)	421
MboII	GAAGA	3 cut(s)	155, 590, 953
MhlI	GDGCHC	3 cut(s)	650, 697, 793
MluCI	AATT	3 cut(s)	548, 680, 805
MlyI	GAGTC	2 cut(s)	283, 479
MmeI	TCCRAC	2 cut(s)	41, 198
MroXI	GAANNNNTTC	1 cut(s)	504
MseI	TTAA	1 cut(s)	618
MspA1I	CMGCKG	1 cut(s)	311
MspI	CCGG	3 cut(s)	295, 396, 432
MvnI	CGCG	1 cut(s)	734
MwoI	GCNNNNNNNGC	3 cut(s)	246, 401, 645
NdeII	GATC	1 cut(s)	421
NlaIII	CATG	7 cut(s)	288, 689, 701, 748, 776, 831, 915
NlaIV	GGNNCC	3 cut(s)	430, 490, 703
NmuCI	GTSAC	2 cut(s)	88, 512
NspI	RCATGY	1 cut(s)	776
PaeI	GCATGC	1 cut(s)	776
PaqCI	CACCTGC	1 cut(s)	101
PcsI	WCGNNNNNNNCGW	1 cut(s)	211
PdmI	GAANNNNTTC	1 cut(s)	504
PfeI	GAWTC	2 cut(s)	160, 365
PinAI	ACCGGT	1 cut(s)	294
PkrI	GCNGC	2 cut(s)	310, 317
PleI	GAGTC	2 cut(s)	283, 478
PpsI	GAGTC	2 cut(s)	283, 478
Ppu21I	YACGTR	1 cut(s)	86
PshAI	GACNNNNGTC	1 cut(s)	907
PspEI	GGTNACC	1 cut(s)	512
PspN4I	GGNNCC	3 cut(s)	430, 490, 703
PspPI	GGNCC	1 cut(s)	447
RsaI	GTAC	3 cut(s)	26, 84, 410
RsaNI	GTAC	3 cut(s)	25, 83, 409
SaqAI	TTAA	1 cut(s)	618
SatI	GCNGC	2 cut(s)	309, 316
Sau3AI	GATC	1 cut(s)	421
Sau96I	GGNCC	1 cut(s)	447
SchI	GAGTC	2 cut(s)	283, 479
SduI	GDGCHC	3 cut(s)	650, 697, 793
SfaNI	GCATC	1 cut(s)	822
SfcI	CTRYAG	1 cut(s)	480
SmlI	CTYRAG	1 cut(s)	576
SmoI	CTYRAG	1 cut(s)	576
SphI	GCATGC	1 cut(s)	776
Sse9I	AATT	3 cut(s)	548, 680, 805
SsiI	CCGC	2 cut(s)	311, 776
SspMI	CTAG	3 cut(s)	425, 605, 906
StyI	CCWWGG	2 cut(s)	527, 905
TaaI	ACNGT	6 cut(s)	65, 157, 215, 464, 595, 795
TaiI	ACGT	1 cut(s)	88
TaqI	TCGA	5 cut(s)	194, 281, 381, 498, 787
TasI	AATT	3 cut(s)	548, 680, 805
TfiI	GAWTC	2 cut(s)	160, 365
Tru1I	TTAA	1 cut(s)	618
Tru9I	TTAA	1 cut(s)	618
TscAI	CASTG	2 cut(s)	160, 449
TseFI	GTSAC	2 cut(s)	88, 512
TseI	GCWGC	2 cut(s)	308, 315
Tsp45I	GTSAC	2 cut(s)	88, 512
TspGWI	ACGGA	2 cut(s)	68, 778
TspRI	CASTG	2 cut(s)	160, 449
VneI	GTGCAC	1 cut(s)	646
XagI	CCTNNNNNAGG	1 cut(s)	483
XceI	RCATGY	1 cut(s)	776
XcmI	CCANNNNNNNNNTGG	1 cut(s)	930
XmaJI	CCTAGG	1 cut(s)	905
XmiI	GTMKAC	1 cut(s)	438
XmnI	GAANNNNTTC	1 cut(s)	504
XspI	CTAG	3 cut(s)	425, 605, 906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.