Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0011204

Physical Location & Seq

Genomic Coordinates Reverse (-)

13123960 .. 13124892

Gene Structure 933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G210600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGTCTATCCTAACTCAAGCCAAGCTCCACCCAAGTCTCCAACACCAACTCCACACAAGCCACTCTCCAATCCTCCGCACAGCTGTGCATTGTTCTGCCGCCACCACCACCAAGCCCAACCCTAACCCCAACCCCAAAAAGCTAGTCCTCGAACCACCGATACGGAGGCTCGAGCCCCCACCGCCCCTCCTCCCGAACCCCACCCGCCCCCAGCTCAACGACCCAAGTTTGCTCTCAACATGGTCTCACCGTGCATGGGTGGCAAGTGGGTGCACAACAGTTCTAGTTTCCTTAGCCAAGTCCATAACTTGTGCAGCCAATTCACACATGTGGGCTGAGCCCATTTTAGCTGGCTTGGTTGGATATGTGCTGGCTGATCTTGGCTCCGGAGTCTACCATTGGGGCATAGACAATTACGGTGGAGCCTCAACTCCAATTTTTGGTGCCCAAATTGAGGCATTTCAAGGGCACCACAAGTGGCCTTGGACAATCACCAGGCGAGAATTTGCCAACAATCTGCACGCCCTTGCTCGTGTTGTGACTTTCATAGTGCTCCCCATAGACCTCGTTTGTGATGATCCAATTGTTAATGGGTTTGTTGCAGTGTGCTCAGGCTCCATTATGTTTAGCCAACAGTTTCATGCTTGGGCGCATGGCACAAAGAGCAGGCTCCCTCCATTGGTGGTGGCATTGCAGGATTTCGGCGTCTTGGTGTCCCGGTCGCAGCATTCAGCGCATCACCGGGAGCCTTACAACAACAATTACTGCATTGTGAGTGGAGTTTGGAATGAGTTCTTGGATAAGCACAAGGTTTTTGAGGCATTGGAGATGATTTTGTTTTTTAAGCAAGGGGTGAGGCCTAGGTCTTGGAGTGAGCCTAGCTCTGAATGGACTGAAGAGACTGAGACCACTTCTCAACTTACAGCCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006464 GO:0006508 GO:0006511 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009057 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009941 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016053 GO:0016491 GO:0016567 GO:0016705 GO:0016740 GO:0019538 GO:0019637 GO:0019752 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0030433 GO:0031090 GO:0031625 GO:0031967 GO:0031969 GO:0031975 GO:0032446 GO:0032787 GO:0033554 GO:0033559 GO:0034976 GO:0036211 GO:0036503 GO:0042170 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044281 GO:0044283 GO:0044389 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046471 GO:0046486 GO:0050896 GO:0051603 GO:0051716 GO:0052637 GO:0055114 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0072330 GO:0080167 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901698

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM189_B_dmain

Protein Analysis

311

Amino Acids

34.41

Weight (kDa)

7.77

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27030
fragaria_vesca	FvH4_3g22400
malus_domestica	MD03G1205300.v1.1 MD11G1221200.v1.1
prunus_persica	Prupe.4G210500_v2.0.a1 Prupe.4G210600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0039071
rosa_laevigata	RLG00000033888 RLG00000033890 RLG00000033891
rosa_multiflora	Rmu_co8409277.1_g000001 Rmu_sc0000533.1_g000033 Rmu_sc0007753.1_g000004
rosa_roxburghii	Rroxscaffold_1G00042040
rosa_rugosa	Rorug05G0176300
rosa_samantha	Rh5AG262700 Rh5BG267500 Rh5CG300200 Rh5DG273900
rosa_wichuraiana	Rw5G024560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	443, 468
AccB7I	CCANNNNNTGG	1 cut(s)	440
AccI	GTMKAC	1 cut(s)	393
AccIII	TCCGGA	1 cut(s)	386
AciI	CCGC	4 cut(s)	76, 99, 182, 205
AclWI	GGATC	1 cut(s)	572
AcsI	RAATTY	1 cut(s)	503
AcuI	CTGAAG	1 cut(s)	915
AcyI	GRCGYC	1 cut(s)	705
AfiI	CCNNNNNNNGG	4 cut(s)	256, 440, 454, 679
AflIII	ACRYGT	1 cut(s)	327
AgsI	TTSAA	1 cut(s)	464
AjnI	CCWGG	1 cut(s)	494
AjuI	GAANNNNNNNTTGG	2 cut(s)	779, 811
AleI	CACNNNNGTG	2 cut(s)	83, 328
AluBI	AGCT	6 cut(s)	25, 83, 142, 214, 350, 882
AluI	AGCT	6 cut(s)	25, 83, 142, 214, 350, 882
Alw21I	GWGCWC	3 cut(s)	275, 555, 611
Alw26I	GTCTC	4 cut(s)	41, 249, 893, 899
Alw44I	GTGCAC	1 cut(s)	271
AlwI	GGATC	1 cut(s)	572
Ama87I	CYCGRG	1 cut(s)	170
Aor13HI	TCCGGA	1 cut(s)	386
AoxI	GGCC	2 cut(s)	479, 857
ApaLI	GTGCAC	1 cut(s)	271
ApeKI	GCWGC	2 cut(s)	314, 724
ApoI	RAATTY	1 cut(s)	503
ArsI	GACNNNNNNTTYG	2 cut(s)	129, 161
Asp700I	GAANNNNTTC	1 cut(s)	791
AspA2I	CCTAGG	1 cut(s)	860
AspLEI	GCGC	2 cut(s)	652, 736
AsuC2I	CCSGG	2 cut(s)	718, 743
AsuHPI	GGTGA	4 cut(s)	239, 484, 731, 865
AvaI	CYCGRG	1 cut(s)	170
AvrII	CCTAGG	1 cut(s)	860
BaeGI	GKGCMC	3 cut(s)	275, 448, 471
BanI	GGYRCC	2 cut(s)	443, 468
BanII	GRGCYC	2 cut(s)	177, 342
BauI	CACGAG	1 cut(s)	531
Bbv12I	GWGCWC	3 cut(s)	275, 555, 611
BbvI	GCAGC	2 cut(s)	326, 736
BciT130I	CCWGG	1 cut(s)	496
BcnI	CCSGG	2 cut(s)	718, 743
BcoDI	GTCTC	4 cut(s)	41, 249, 893, 899
BfaI	CTAG	4 cut(s)	143, 284, 861, 879
BisI	GCNGC	3 cut(s)	99, 315, 725
BlnI	CCTAGG	1 cut(s)	860
BlpI	GCTNAGC	1 cut(s)	336
BlsI	GCNGC	3 cut(s)	100, 316, 726
Bme1390I	CCNGG	3 cut(s)	496, 718, 743
BmeT110I	CYCGRG	1 cut(s)	170
BmiI	GGNNCC	7 cut(s)	385, 424, 445, 470, 616, 671, 747
BmrFI	CCNGG	3 cut(s)	496, 718, 743
BmsI	GCATC	1 cut(s)	745
BplI	GAGNNNNNCTC	2 cut(s)	866, 898
Bpu10I	CCTNAGC	2 cut(s)	292, 610
Bpu1102I	GCTNAGC	1 cut(s)	336
BpuMI	CCSGG	2 cut(s)	718, 743
BsaHI	GRCGYC	1 cut(s)	705
BsaI	GGTCTC	2 cut(s)	249, 899
BsaJI	CCNNGG	2 cut(s)	482, 860
BsaWI	WCCGGW	1 cut(s)	386
BsaXI	ACNNNNNCTCC	4 cut(s)	33, 63, 171, 201
Bsc4I	CCNNNNNNNGG	4 cut(s)	256, 440, 454, 679
Bse3DI	GCAATG	1 cut(s)	689
BseAI	TCCGGA	1 cut(s)	386
BseBI	CCWGG	1 cut(s)	496
BseDI	CCNNGG	2 cut(s)	482, 860
BseLI	CCNNNNNNNGG	4 cut(s)	256, 440, 454, 679
BseMI	GCAATG	1 cut(s)	689
BseMII	CTCAG	3 cut(s)	327, 624, 894
BseRI	GAGGAG	1 cut(s)	179
BseSI	GKGCMC	3 cut(s)	275, 448, 471
BseXI	GCAGC	2 cut(s)	326, 736
BseYI	CCCAGC	1 cut(s)	210
BsgI	GTGCAG	2 cut(s)	333, 503
Bsh1285I	CGRYCG	1 cut(s)	722
BshFI	GGCC	2 cut(s)	481, 859
BshNI	GGYRCC	2 cut(s)	443, 468
BsiEI	CGRYCG	1 cut(s)	722
BsiHKAI	GWGCWC	3 cut(s)	275, 555, 611
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	3 cut(s)	387, 718, 742
BslFI	GGGAC	1 cut(s)	700
BslI	CCNNNNNNNGG	4 cut(s)	256, 440, 454, 679
BsmAI	GTCTC	4 cut(s)	41, 249, 893, 899
BsmFI	GGGAC	1 cut(s)	700
BsmI	GAATGC	1 cut(s)	727
BsnI	GGCC	2 cut(s)	481, 859
Bso31I	GGTCTC	2 cut(s)	249, 899
BsoBI	CYCGRG	1 cut(s)	170
Bsp1286I	GDGCHC	7 cut(s)	177, 275, 342, 448, 471, 555, 611
Bsp13I	TCCGGA	1 cut(s)	386
Bsp143I	GATC	2 cut(s)	376, 577
Bsp1720I	GCTNAGC	1 cut(s)	336
BspACI	CCGC	4 cut(s)	76, 99, 182, 205
BspANI	GGCC	2 cut(s)	481, 859
BspCNI	CTCAG	3 cut(s)	328, 623, 895
BspEI	TCCGGA	1 cut(s)	386
BspLI	GGNNCC	7 cut(s)	385, 424, 445, 470, 616, 671, 747
BspPI	GGATC	1 cut(s)	572
BspT107I	GGYRCC	2 cut(s)	443, 468
BspTNI	GGTCTC	2 cut(s)	249, 899
BsrDI	GCAATG	1 cut(s)	689
BssECI	CCNNGG	2 cut(s)	482, 860
BssMI	GATC	2 cut(s)	376, 577
BssNI	GRCGYC	1 cut(s)	705
BssSI	CACGAG	1 cut(s)	531
BssT1I	CCWWGG	2 cut(s)	482, 860
Bst2BI	CACGAG	1 cut(s)	531
Bst2UI	CCWGG	1 cut(s)	496
Bst4CI	ACNGT	4 cut(s)	251, 280, 419, 636
Bst6I	CTCTTC	1 cut(s)	891
BstACI	GRCGYC	1 cut(s)	705
BstC8I	GCNNGC	4 cut(s)	352, 372, 522, 668
BstDEI	CTNAG	4 cut(s)	292, 336, 610, 903
BstHHI	GCGC	2 cut(s)	652, 736
BstKTI	GATC	2 cut(s)	379, 580
BstMAI	GTCTC	4 cut(s)	41, 249, 893, 899
BstMBI	GATC	2 cut(s)	376, 577
BstMCI	CGRYCG	1 cut(s)	722
BstMWI	GCNNNNNNNGC	4 cut(s)	181, 260, 663, 733
BstNI	CCWGG	1 cut(s)	496
BstNSI	RCATGY	1 cut(s)	331
BstSCI	CCNGG	3 cut(s)	494, 716, 741
BstSLI	GKGCMC	3 cut(s)	275, 448, 471
BstV1I	GCAGC	2 cut(s)	326, 736
BsuRI	GGCC	2 cut(s)	481, 859
BtsI	GCAGTG	1 cut(s)	609
BtsIMutI	CAGTG	1 cut(s)	609
Cac8I	GCNNGC	4 cut(s)	352, 372, 522, 668
CfoI	GCGC	2 cut(s)	652, 736
CseI	GACGC	1 cut(s)	694
CspCI	CAANNNNNGTGG	2 cut(s)	400, 435
CviAII	CATG	5 cut(s)	240, 255, 328, 641, 653
DdeI	CTNAG	4 cut(s)	292, 336, 610, 903
DpnI	GATC	2 cut(s)	378, 579
DpnII	GATC	2 cut(s)	376, 577
Eam1104I	CTCTTC	1 cut(s)	891
EarI	CTCTTC	1 cut(s)	891
Eco130I	CCWWGG	2 cut(s)	482, 860
Eco147I	AGGCCT	1 cut(s)	859
Eco24I	GRGCYC	2 cut(s)	177, 342
Eco31I	GGTCTC	2 cut(s)	249, 899
Eco57I	CTGAAG	1 cut(s)	915
Eco88I	CYCGRG	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	494
EcoT14I	CCWWGG	2 cut(s)	482, 860
EcoT38I	GRGCYC	2 cut(s)	177, 342
ErhI	CCWWGG	2 cut(s)	482, 860
FaeI	CATG	5 cut(s)	243, 258, 331, 644, 656
FaqI	GGGAC	1 cut(s)	700
FatI	CATG	5 cut(s)	239, 254, 327, 640, 652
FauI	CCCGC	1 cut(s)	212
FblI	GTMKAC	1 cut(s)	393
Fnu4HI	GCNGC	3 cut(s)	99, 315, 725
FriOI	GRGCYC	2 cut(s)	177, 342
Fsp4HI	GCNGC	3 cut(s)	99, 315, 725
FspBI	CTAG	4 cut(s)	143, 284, 861, 879
GlaI	GCGC	2 cut(s)	651, 735
GluI	GCNGC	3 cut(s)	99, 315, 725
GsaI	CCCAGC	1 cut(s)	214
HaeIII	GGCC	2 cut(s)	481, 859
HapII	CCGG	3 cut(s)	387, 718, 742
HgaI	GACGC	1 cut(s)	694
HhaI	GCGC	2 cut(s)	652, 736
Hin1I	GRCGYC	1 cut(s)	705
Hin1II	CATG	5 cut(s)	243, 258, 331, 644, 656
Hin6I	GCGC	2 cut(s)	650, 734
HinP1I	GCGC	2 cut(s)	650, 734
HinfI	GANTC	1 cut(s)	390
HpaII	CCGG	3 cut(s)	387, 718, 742
HphI	GGTGA	4 cut(s)	239, 484, 731, 865
Hpy166II	GTNNAC	2 cut(s)	273, 394
Hpy188I	TCNGA	1 cut(s)	886
Hpy188III	TCNNGA	2 cut(s)	193, 387
Hpy8I	GTNNAC	2 cut(s)	273, 394
HpyCH4III	ACNGT	4 cut(s)	251, 280, 419, 636
HpyCH4V	TGCA	8 cut(s)	88, 254, 273, 314, 520, 602, 694, 768
HpyF10VI	GCNNNNNNNGC	4 cut(s)	181, 260, 663, 733
HpyF3I	CTNAG	4 cut(s)	292, 336, 610, 903
Hsp92I	GRCGYC	1 cut(s)	705
Hsp92II	CATG	5 cut(s)	243, 258, 331, 644, 656
HspAI	GCGC	2 cut(s)	650, 734
Kpn2I	TCCGGA	1 cut(s)	386
Kzo9I	GATC	2 cut(s)	376, 577
LmnI	GCTCC	7 cut(s)	30, 389, 422, 558, 620, 675, 745
Lsp1109I	GCAGC	2 cut(s)	326, 736
LweI	GCATC	1 cut(s)	745
MaeI	CTAG	4 cut(s)	143, 284, 861, 879
MaeIII	GTNAC	1 cut(s)	538
MalI	GATC	2 cut(s)	378, 579
MboI	GATC	2 cut(s)	376, 577
MboII	GAAGA	1 cut(s)	908
MfeI	CAATTG	1 cut(s)	582
MhlI	GDGCHC	7 cut(s)	177, 275, 342, 448, 471, 555, 611
MluCI	AATT	7 cut(s)	319, 412, 435, 450, 503, 582, 760
MlyI	GAGTC	1 cut(s)	399
MmeI	TCCRAC	2 cut(s)	64, 340
MroI	TCCGGA	1 cut(s)	386
MroXI	GAANNNNTTC	1 cut(s)	791
MseI	TTAA	2 cut(s)	588, 843
MslI	CAYNNNNRTG	2 cut(s)	83, 328
MspA1I	CMGCKG	1 cut(s)	83
MspI	CCGG	3 cut(s)	387, 718, 742
MspR9I	CCNGG	3 cut(s)	496, 718, 743
MunI	CAATTG	1 cut(s)	582
Mva1269I	GAATGC	1 cut(s)	727
MvaI	CCWGG	1 cut(s)	496
MwoI	GCNNNNNNNGC	4 cut(s)	181, 260, 663, 733
NciI	CCSGG	2 cut(s)	718, 743
NdeII	GATC	2 cut(s)	376, 577
NlaIII	CATG	5 cut(s)	243, 258, 331, 644, 656
NlaIV	GGNNCC	7 cut(s)	385, 424, 445, 470, 616, 671, 747
NmuCI	GTSAC	1 cut(s)	538
NspI	RCATGY	1 cut(s)	331
OliI	CACNNNNGTG	2 cut(s)	83, 328
PaeR7I	CTCGAG	1 cut(s)	170
PceI	AGGCCT	1 cut(s)	859
PciI	ACATGT	1 cut(s)	327
PctI	GAATGC	1 cut(s)	727
PdmI	GAANNNNTTC	1 cut(s)	791
PflMI	CCANNNNNTGG	1 cut(s)	440
PkrI	GCNGC	3 cut(s)	100, 316, 726
PleI	GAGTC	1 cut(s)	398
PpsI	GAGTC	1 cut(s)	398
PscI	ACATGT	1 cut(s)	327
Psp6I	CCWGG	1 cut(s)	494
PspFI	CCCAGC	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	494
PspN4I	GGNNCC	7 cut(s)	385, 424, 445, 470, 616, 671, 747
PspXI	VCTCGAGB	1 cut(s)	170
PsrI	GAACNNNNNNTAC	2 cut(s)	144, 176
PvuII	CAGCTG	1 cut(s)	83
RseI	CAYNNNNRTG	2 cut(s)	83, 328
SaqAI	TTAA	2 cut(s)	588, 843
SatI	GCNGC	3 cut(s)	99, 315, 725
Sau3AI	GATC	2 cut(s)	376, 577
SchI	GAGTC	1 cut(s)	399
ScrFI	CCNGG	3 cut(s)	496, 718, 743
SduI	GDGCHC	7 cut(s)	177, 275, 342, 448, 471, 555, 611
SetI	ASST	9 cut(s)	27, 85, 144, 216, 352, 567, 813, 866, 884
SfaNI	GCATC	1 cut(s)	745
Sfr274I	CTCGAG	1 cut(s)	170
SlaI	CTCGAG	1 cut(s)	170
SmiMI	CAYNNNNRTG	2 cut(s)	83, 328
SmlI	CTYRAG	2 cut(s)	15, 170
SmoI	CTYRAG	2 cut(s)	15, 170
Sse9I	AATT	7 cut(s)	319, 412, 435, 450, 503, 582, 760
SseBI	AGGCCT	1 cut(s)	859
SsiI	CCGC	4 cut(s)	76, 99, 182, 205
SspMI	CTAG	4 cut(s)	143, 284, 861, 879
StuI	AGGCCT	1 cut(s)	859
StyD4I	CCNGG	3 cut(s)	494, 716, 741
StyI	CCWWGG	2 cut(s)	482, 860
TaaI	ACNGT	4 cut(s)	251, 280, 419, 636
TaqI	TCGA	2 cut(s)	150, 171
TasI	AATT	7 cut(s)	319, 412, 435, 450, 503, 582, 760
TauI	GCSGC	1 cut(s)	101
Tru1I	TTAA	2 cut(s)	588, 843
Tru9I	TTAA	2 cut(s)	588, 843
TscAI	CASTG	1 cut(s)	609
TseFI	GTSAC	1 cut(s)	538
TseI	GCWGC	2 cut(s)	314, 724
Tsp45I	GTSAC	1 cut(s)	538
TspDTI	ATGAA	2 cut(s)	535, 629
TspGWI	ACGGA	1 cut(s)	178
TspRI	CASTG	1 cut(s)	609
Van91I	CCANNNNNTGG	1 cut(s)	440
VneI	GTGCAC	1 cut(s)	271
XapI	RAATTY	1 cut(s)	503
XceI	RCATGY	1 cut(s)	331
XhoI	CTCGAG	1 cut(s)	170
XmaJI	CCTAGG	1 cut(s)	860
XmiI	GTMKAC	1 cut(s)	393
XmnI	GAANNNNTTC	1 cut(s)	791
XspI	CTAG	4 cut(s)	143, 284, 861, 879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.