Rroxscaffold_1G00042040

Fatty acid desaturase 4

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
60046676 .. 60047518
843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00042040.1

Sequence Viewer

Length: 843 bp
ATGTCTATCTTCACTCAAACCAAGCTCCTCCCAAGCCCCAAACACCATGTTCACACAATATGCCACTCTCCAATCCTCCGAACAACTGTACATTGCTCTGTCTCCACCACCGCAAAGCCGAAGCCAGTCCCCGAAAAGCTCATCATCGAACCTCCCCGGCTGCAGCAGCTGGAACCGTCACCGGACAACATCCGGCCGATGCTCAATGACCCGAGTCTACTATCAACGTGGTCTCACCGTGCGTGGGTAGCGAGCGGGTGCACTACTGTGCTCATTTCTCTAGCTAAATCCGTAGCGGGTGCAGCCCATTCACACATATGGGCCGAGCCCATTTTAGCAGGCTTGGTCGGGTACGTGTTGGCGGATCTCGGATCCGGAGTTTACCATTGGGGCATTGACAACTATGGTGGTGCCTCAACTCCAATTTTTGGTGCCCAAATAGAGGCATTCCAAGGTCACCATAAGTGGCCCTGGACAATCACTAAGCGCCAATTTGCTAACAATTTACATGCCTTGGCTCGTGTCATAACTTTCACAGTGCTTCCCTTAGACCTTGGCTTTGATGATCCTATTTTTCATGGCTTTGTTGCTGTTTGCTCTGGTTGCATTATGTTTAGCCAGCAATTTCATGCTTGGGCTCATGGCACAAAGAGCCGGCTACCTCCATTGGTGCTGGCATTGCAAGATTCCGGCTTACTGATATCTCGGTCTCAACATTCGGAGCACCACCGGCAACCTTATAACAACAACTACTGCATAGTAAGTGGAGTTTGGAACGAGTTTTTGGATAAGCAGAAGGTATTTGAAGCGTTGGAGATGATCTTGTTTTTAAGCAAGGGTTAA

Protein Analysis

280

Amino Acids

31.05

Weight (kDa)

8.53

Isoelectric Point (pI)

43.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipid_desat PF10520 118 - 279 1.9e-66 Lipid desaturase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 741
AccB1I GGYRCC 2 cut(s) 410, 431
AccB7I CCANNNNNTGG 1 cut(s) 428
AccBSI CCGCTC 1 cut(s) 255
AccI GTMKAC 1 cut(s) 217
AccIII TCCGGA 1 cut(s) 374
AciI CCGC 4 cut(s) 111, 255, 296, 362
AclWI GGATC 4 cut(s) 366, 372, 379, 560
AcoI YGGCCR 1 cut(s) 194
AfaI GTAC 2 cut(s) 90, 353
AfiI CCNNNNNNNGG 3 cut(s) 244, 428, 442
AflIII ACRYGT 1 cut(s) 354
AgsI TTSAA 1 cut(s) 806
AjnI CCWGG 1 cut(s) 470
AjuI GAANNNNNNNTTGG 2 cut(s) 767, 799
AleI CACNNNNGTG 1 cut(s) 266
AluBI AGCT 4 cut(s) 25, 139, 169, 284
AluI AGCT 4 cut(s) 25, 139, 169, 284
Alw21I GWGCWC 3 cut(s) 263, 273, 726
Alw26I GTCTC 3 cut(s) 106, 237, 714
Alw44I GTGCAC 1 cut(s) 259
AlwI GGATC 4 cut(s) 366, 372, 379, 560
AlwNI CAGNNNCTG 1 cut(s) 169
Ama87I CYCGRG 1 cut(s) 211
Aor13HI TCCGGA 1 cut(s) 374
AoxI GGCC 3 cut(s) 194, 321, 467
ApaLI GTGCAC 1 cut(s) 259
ApeKI GCWGC 4 cut(s) 160, 163, 166, 302
ArsI GACNNNNNNTTYG 2 cut(s) 542, 574
AspLEI GCGC 1 cut(s) 489
AspS9I GGNCC 2 cut(s) 321, 468
AsuC2I CCSGG 1 cut(s) 157
AsuHPI GGTGA 3 cut(s) 171, 227, 449
AvaI CYCGRG 1 cut(s) 211
BaeGI GKGCMC 2 cut(s) 263, 436
BamHI GGATCC 1 cut(s) 371
BanI GGYRCC 2 cut(s) 410, 431
BanII GRGCYC 2 cut(s) 330, 640
BauI CACGAG 1 cut(s) 519
Bbv12I GWGCWC 3 cut(s) 263, 273, 726
BbvI GCAGC 4 cut(s) 147, 175, 178, 314
BciT130I CCWGG 1 cut(s) 472
BcnI CCSGG 1 cut(s) 157
BcoDI GTCTC 3 cut(s) 106, 237, 714
BfaI CTAG 1 cut(s) 281
BfmI CTRYAG 1 cut(s) 161
BfoI RGCGCY 1 cut(s) 490
BisI GCNGC 4 cut(s) 161, 164, 167, 303
BlsI GCNGC 4 cut(s) 162, 165, 168, 304
Bme1390I CCNGG 2 cut(s) 157, 472
BmeT110I CYCGRG 1 cut(s) 211
BmgT120I GGNCC 2 cut(s) 321, 468
BmiI GGNNCC 4 cut(s) 174, 373, 412, 433
BmrFI CCNGG 2 cut(s) 157, 472
BmsI GCATC 1 cut(s) 189
BoxI GACNNNNGTC 1 cut(s) 213
BpuMI CCSGG 1 cut(s) 157
BsaAI YACGTR 1 cut(s) 355
BsaI GGTCTC 2 cut(s) 237, 714
BsaJI CCNNGG 5 cut(s) 155, 451, 470, 513, 553
BsaWI WCCGGW 2 cut(s) 181, 374
Bsc4I CCNNNNNNNGG 3 cut(s) 244, 428, 442
Bse118I RCCGGY 2 cut(s) 654, 729
Bse1I ACTGG 1 cut(s) 125
Bse3DI GCAATG 2 cut(s) 91, 677
BseAI TCCGGA 1 cut(s) 374
BseBI CCWGG 1 cut(s) 472
BseDI CCNNGG 5 cut(s) 155, 451, 470, 513, 553
BseGI GGATG 1 cut(s) 189
BseLI CCNNNNNNNGG 3 cut(s) 244, 428, 442
BseMI GCAATG 2 cut(s) 91, 677
BseNI ACTGG 1 cut(s) 125
BseRI GAGGAG 1 cut(s) 17
BseSI GKGCMC 2 cut(s) 263, 436
BseX3I CGGCCG 1 cut(s) 194
BseXI GCAGC 4 cut(s) 147, 175, 178, 314
BsgI GTGCAG 1 cut(s) 321
Bsh1285I CGRYCG 1 cut(s) 197
BshFI GGCC 3 cut(s) 196, 323, 469
BshNI GGYRCC 2 cut(s) 410, 431
BsiEI CGRYCG 1 cut(s) 197
BsiHKAI GWGCWC 3 cut(s) 263, 273, 726
BsiHKCI CYCGRG 1 cut(s) 211
BsiSI CCGG 7 cut(s) 157, 182, 193, 375, 655, 690, 730
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 3 cut(s) 244, 428, 442
BsmAI GTCTC 3 cut(s) 106, 237, 714
BsmFI GGGAC 1 cut(s) 113
BsmI GAATGC 1 cut(s) 446
BsnI GGCC 3 cut(s) 196, 323, 469
Bso31I GGTCTC 2 cut(s) 237, 714
BsoBI CYCGRG 1 cut(s) 211
Bsp1286I GDGCHC 6 cut(s) 263, 273, 330, 436, 640, 726
Bsp13I TCCGGA 1 cut(s) 374
Bsp1407I TGTACA 1 cut(s) 88
Bsp143I GATC 4 cut(s) 364, 371, 565, 819
BspACI CCGC 4 cut(s) 111, 255, 296, 362
BspANI GGCC 3 cut(s) 196, 323, 469
BspEI TCCGGA 1 cut(s) 374
BspLI GGNNCC 4 cut(s) 174, 373, 412, 433
BspMAI CTGCAG 1 cut(s) 165
BspPI GGATC 4 cut(s) 366, 372, 379, 560
BspT107I GGYRCC 2 cut(s) 410, 431
BspTNI GGTCTC 2 cut(s) 237, 714
BsrBI CCGCTC 1 cut(s) 255
BsrDI GCAATG 2 cut(s) 91, 677
BsrFI RCCGGY 2 cut(s) 654, 729
BsrGI TGTACA 1 cut(s) 88
BsrI ACTGG 1 cut(s) 125
BssAI RCCGGY 2 cut(s) 654, 729
BssECI CCNNGG 5 cut(s) 155, 451, 470, 513, 553
BssMI GATC 4 cut(s) 364, 371, 565, 819
BssSI CACGAG 1 cut(s) 519
BssT1I CCWWGG 3 cut(s) 451, 513, 553
Bst2BI CACGAG 1 cut(s) 519
Bst2UI CCWGG 1 cut(s) 472
Bst4CI ACNGT 5 cut(s) 88, 177, 239, 268, 538
BstAUI TGTACA 1 cut(s) 88
BstBAI YACGTR 1 cut(s) 355
BstC8I GCNNGC 5 cut(s) 253, 340, 620, 656, 675
BstDEI CTNAG 2 cut(s) 483, 547
BstEII GGTNACC 1 cut(s) 455
BstF5I GGATG 1 cut(s) 189
BstH2I RGCGCY 1 cut(s) 490
BstHHI GCGC 1 cut(s) 489
BstKTI GATC 4 cut(s) 367, 374, 568, 822
BstMAI GTCTC 3 cut(s) 106, 237, 714
BstMBI GATC 4 cut(s) 364, 371, 565, 819
BstMCI CGRYCG 1 cut(s) 197
BstMWI GCNNNNNNNGC 7 cut(s) 166, 248, 302, 603, 651, 679, 730
BstNI CCWGG 1 cut(s) 472
BstNSI RCATGY 1 cut(s) 512
BstPAI GACNNNNGTC 1 cut(s) 213
BstPI GGTNACC 1 cut(s) 455
BstSCI CCNGG 2 cut(s) 155, 470
BstSFI CTRYAG 1 cut(s) 161
BstSLI GKGCMC 2 cut(s) 263, 436
BstV1I GCAGC 4 cut(s) 147, 175, 178, 314
BstX2I RGATCY 2 cut(s) 364, 371
BstYI RGATCY 2 cut(s) 364, 371
BstZI CGGCCG 1 cut(s) 194
BsuRI GGCC 3 cut(s) 196, 323, 469
BtsCI GGATG 1 cut(s) 189
BtsIMutI CAGTG 1 cut(s) 543
Cac8I GCNNGC 5 cut(s) 253, 340, 620, 656, 675
CaiI CAGNNNCTG 1 cut(s) 169
CfoI GCGC 1 cut(s) 489
Cfr10I RCCGGY 2 cut(s) 654, 729
Cfr13I GGNCC 2 cut(s) 321, 468
Csp6I GTAC 2 cut(s) 89, 352
CspCI CAANNNNNGTGG 2 cut(s) 388, 423
CviAII CATG 5 cut(s) 47, 509, 578, 629, 641
CviQI GTAC 2 cut(s) 89, 352
DdeI CTNAG 2 cut(s) 483, 547
DpnI GATC 4 cut(s) 366, 373, 567, 821
DpnII GATC 4 cut(s) 364, 371, 565, 819
EaeI YGGCCR 1 cut(s) 194
EagI CGGCCG 1 cut(s) 194
EciI GGCGGA 1 cut(s) 377
EclXI CGGCCG 1 cut(s) 194
Eco130I CCWWGG 3 cut(s) 451, 513, 553
Eco24I GRGCYC 2 cut(s) 330, 640
Eco31I GGTCTC 2 cut(s) 237, 714
Eco32I GATATC 1 cut(s) 702
Eco52I CGGCCG 1 cut(s) 194
Eco88I CYCGRG 1 cut(s) 211
Eco91I GGTNACC 1 cut(s) 455
EcoO65I GGTNACC 1 cut(s) 455
EcoRII CCWGG 1 cut(s) 470
EcoRV GATATC 1 cut(s) 702
EcoT14I CCWWGG 3 cut(s) 451, 513, 553
EcoT38I GRGCYC 2 cut(s) 330, 640
ErhI CCWWGG 3 cut(s) 451, 513, 553
FaeI CATG 5 cut(s) 50, 512, 581, 632, 644
FaqI GGGAC 1 cut(s) 113
FatI CATG 5 cut(s) 46, 508, 577, 628, 640
FauI CCCGC 2 cut(s) 248, 289
FauNDI CATATG 1 cut(s) 317
FblI GTMKAC 1 cut(s) 217
Fnu4HI GCNGC 4 cut(s) 161, 164, 167, 303
FokI GGATG 1 cut(s) 176
FriOI GRGCYC 2 cut(s) 330, 640
Fsp4HI GCNGC 4 cut(s) 161, 164, 167, 303
FspBI CTAG 1 cut(s) 281
GlaI GCGC 1 cut(s) 488
GluI GCNGC 4 cut(s) 161, 164, 167, 303
HaeII RGCGCY 1 cut(s) 490
HaeIII GGCC 3 cut(s) 196, 323, 469
HapII CCGG 7 cut(s) 157, 182, 193, 375, 655, 690, 730
HhaI GCGC 1 cut(s) 489
Hin1II CATG 5 cut(s) 50, 512, 581, 632, 644
Hin6I GCGC 1 cut(s) 487
HinP1I GCGC 1 cut(s) 487
HinfI GANTC 2 cut(s) 214, 686
HpaII CCGG 7 cut(s) 157, 182, 193, 375, 655, 690, 730
HphI GGTGA 3 cut(s) 171, 227, 449
Hpy166II GTNNAC 4 cut(s) 52, 218, 261, 382
Hpy188I TCNGA 3 cut(s) 80, 371, 721
Hpy188III TCNNGA 1 cut(s) 375
Hpy8I GTNNAC 4 cut(s) 52, 218, 261, 382
HpyAV CCTTC 1 cut(s) 790
HpyCH4III ACNGT 5 cut(s) 88, 177, 239, 268, 538
HpyCH4IV ACGT 2 cut(s) 227, 354
HpyCH4V TGCA 6 cut(s) 163, 261, 302, 606, 682, 756
HpyF10VI GCNNNNNNNGC 7 cut(s) 166, 248, 302, 603, 651, 679, 730
HpyF3I CTNAG 2 cut(s) 483, 547
HpySE526I ACGT 2 cut(s) 227, 354
Hsp92II CATG 5 cut(s) 50, 512, 581, 632, 644
HspAI GCGC 1 cut(s) 487
Kpn2I TCCGGA 1 cut(s) 374
KroI GCCGGC 1 cut(s) 654
KroNI GCCGGC 1 cut(s) 656
Kzo9I GATC 4 cut(s) 364, 371, 565, 819
LmnI GCTCC 2 cut(s) 30, 721
Lsp1109I GCAGC 4 cut(s) 147, 175, 178, 314
LweI GCATC 1 cut(s) 189
MaeI CTAG 1 cut(s) 281
MaeII ACGT 2 cut(s) 227, 354
MaeIII GTNAC 2 cut(s) 177, 455
MalI GATC 4 cut(s) 366, 373, 567, 821
MbiI CCGCTC 1 cut(s) 255
MboI GATC 4 cut(s) 364, 371, 565, 819
MflI RGATCY 2 cut(s) 364, 371
MhlI GDGCHC 6 cut(s) 263, 273, 330, 436, 640, 726
MluCI AATT 4 cut(s) 423, 491, 502, 623
MlyI GAGTC 1 cut(s) 223
MmeI TCCRAC 1 cut(s) 792
MnlI CCTC 6 cut(s) 38, 86, 162, 424, 436, 672
MroI TCCGGA 1 cut(s) 374
MroNI GCCGGC 1 cut(s) 654
MseI TTAA 2 cut(s) 830, 841
MslI CAYNNNNRTG 2 cut(s) 266, 316
MspA1I CMGCKG 1 cut(s) 169
MspI CCGG 7 cut(s) 157, 182, 193, 375, 655, 690, 730
MspR9I CCNGG 2 cut(s) 157, 472
Mva1269I GAATGC 1 cut(s) 446
MvaI CCWGG 1 cut(s) 472
MwoI GCNNNNNNNGC 7 cut(s) 166, 248, 302, 603, 651, 679, 730
NaeI GCCGGC 1 cut(s) 656
NciI CCSGG 1 cut(s) 157
NdeI CATATG 1 cut(s) 317
NdeII GATC 4 cut(s) 364, 371, 565, 819
NgoMIV GCCGGC 1 cut(s) 654
NlaIII CATG 5 cut(s) 50, 512, 581, 632, 644
NlaIV GGNNCC 4 cut(s) 174, 373, 412, 433
NmeAIII GCCGAG 1 cut(s) 349
NmuCI GTSAC 2 cut(s) 177, 455
NspI RCATGY 1 cut(s) 512
OliI CACNNNNGTG 1 cut(s) 266
PctI GAATGC 1 cut(s) 446
PdiI GCCGGC 1 cut(s) 656
PfeI GAWTC 1 cut(s) 686
PflMI CCANNNNNTGG 1 cut(s) 428
PkrI GCNGC 4 cut(s) 162, 165, 168, 304
PleI GAGTC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 222
Ppu21I YACGTR 1 cut(s) 355
PshAI GACNNNNGTC 1 cut(s) 213
PsiI TTATAA 1 cut(s) 741
Psp6I CCWGG 1 cut(s) 470
PspEI GGTNACC 1 cut(s) 455
PspGI CCWGG 1 cut(s) 470
PspN4I GGNNCC 4 cut(s) 174, 373, 412, 433
PspPI GGNCC 2 cut(s) 321, 468
PstI CTGCAG 1 cut(s) 165
PstNI CAGNNNCTG 1 cut(s) 169
PsuI RGATCY 2 cut(s) 364, 371
PvuII CAGCTG 1 cut(s) 169
RsaI GTAC 2 cut(s) 90, 353
RsaNI GTAC 2 cut(s) 89, 352
RseI CAYNNNNRTG 2 cut(s) 266, 316
SaqAI TTAA 2 cut(s) 830, 841
SatI GCNGC 4 cut(s) 161, 164, 167, 303
Sau3AI GATC 4 cut(s) 364, 371, 565, 819
Sau96I GGNCC 2 cut(s) 321, 468
SchI GAGTC 1 cut(s) 223
ScrFI CCNGG 2 cut(s) 157, 472
SduI GDGCHC 6 cut(s) 263, 273, 330, 436, 640, 726
SfaNI GCATC 1 cut(s) 189
SfcI CTRYAG 1 cut(s) 161
SmiMI CAYNNNNRTG 2 cut(s) 266, 316
Sse9I AATT 4 cut(s) 423, 491, 502, 623
SsiI CCGC 4 cut(s) 111, 255, 296, 362
SspMI CTAG 1 cut(s) 281
StyD4I CCNGG 2 cut(s) 155, 470
StyI CCWWGG 3 cut(s) 451, 513, 553
TaaI ACNGT 5 cut(s) 88, 177, 239, 268, 538
TaiI ACGT 2 cut(s) 230, 357
TaqI TCGA 1 cut(s) 147
TaqII GACCGA 1 cut(s) 696
TasI AATT 4 cut(s) 423, 491, 502, 623
TatI WGTACW 1 cut(s) 88
TfiI GAWTC 1 cut(s) 686
Tru1I TTAA 2 cut(s) 830, 841
Tru9I TTAA 2 cut(s) 830, 841
TscAI CASTG 1 cut(s) 543
TseFI GTSAC 2 cut(s) 177, 455
TseI GCWGC 4 cut(s) 160, 163, 166, 302
Tsp45I GTSAC 2 cut(s) 177, 455
TspDTI ATGAA 2 cut(s) 566, 617
TspGWI ACGGA 1 cut(s) 280
TspRI CASTG 1 cut(s) 543
Van91I CCANNNNNTGG 1 cut(s) 428
VneI GTGCAC 1 cut(s) 259
XceI RCATGY 1 cut(s) 512
XmiI GTMKAC 1 cut(s) 217
XspI CTAG 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.