Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0011204

Physical Location & Seq

Genomic Coordinates Forward (+)

32413973 .. 32414914

Gene Structure 942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1221200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGCTATCTTAACCCAAACCAAGTTCTTCCCAAGTTCCATAAACCAACTCCACACATCCCACTCTCTAATCCGCCGCACTAGAGTGCATTGCTCCGCCGCCACCACCAAGGCAAACCCCGCCGCTGAAAAGCTAGTCCTCAAACCACCACTGCAACTGCTAGAGCCCTCACACTCGCCCTCACCCGCCCTACTCACAGACACCACCATCCGTCCTCCTCAACCCAATGACCCAAGTTTGCTATCGACATGGTCTCACCGTGCATGGGTGGCTAGTGGGTGCACAACAGTCCTAGTTTCTCTAGCCAAGTCCGTAACTTGTGCAGCTGATTCACACATATGGCTCGAGCCCATTTTGGCAGGCTTGGTTGGGTATGTGCTGGCAGACCTCGGATCCGGAGTGTACCATTGGGGCATTGACAATTATGGTGGGGCCTCGACTCCAATTTTTGGTCCCCAGATCGAAGCGTTCCAAGGCCATCACAAGTGGCCTTGGACGATCACTAGGCGCCAATTTTCCAACAACTTACATGCCCTAGCTCGTGTGGTGACTTTCTTTGTGCTTCCTATAGACCTTGTGTGTGATGATCCAGTAGTTAATGGATTTGTTGCAGTGTGCTCTGGCTCCATTATGTTTAGCCAACAGTTTCATGCTTGGGCACACGGCACCAAGAGCCGCCTGCCGCCAGTTGTGGTGGCCTTGCAAGATTTAGGCGTCTTGGTTTCGCGGCCGCAACACGCGGCACACCACCGGCAGCCTTACAACAACAATTACTGCATTGTGAGTGGGGTTTGGAATGAGCTTTTGGACCAGCAGAAGGTTTTCGAGGCATTGGAGATGGTCTTATTTTTTAAGTTAGGGTTAAGACCCAGGTCTTGGAGTGAACCTAGCTCTGAATGGATTGAAGAAACTGAGACTGCTTCACAACTTCAAGGCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006464 GO:0006508 GO:0006511 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009057 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009941 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016053 GO:0016491 GO:0016567 GO:0016705 GO:0016740 GO:0019538 GO:0019637 GO:0019752 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0030433 GO:0031090 GO:0031625 GO:0031967 GO:0031969 GO:0031975 GO:0032446 GO:0032787 GO:0033554 GO:0033559 GO:0034976 GO:0036211 GO:0036503 GO:0042170 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044281 GO:0044283 GO:0044389 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046471 GO:0046486 GO:0050896 GO:0051603 GO:0051716 GO:0052637 GO:0055114 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0072330 GO:0080167 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901698

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM189_B_dmain

Protein Analysis

314

Amino Acids

34.6

Weight (kDa)

7.26

Isoelectric Point (pI)

46.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipid_desat	PF10520	125 - 293	3.2e-69	Lipid desaturase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27030
fragaria_vesca	FvH4_3g22400
malus_domestica	MD03G1205300.v1.1 MD11G1221200.v1.1
prunus_persica	Prupe.4G210500_v2.0.a1 Prupe.4G210600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0039071
rosa_laevigata	RLG00000033888 RLG00000033890 RLG00000033891
rosa_multiflora	Rmu_co8409277.1_g000001 Rmu_sc0000533.1_g000033 Rmu_sc0007753.1_g000004
rosa_roxburghii	Rroxscaffold_1G00042040
rosa_rugosa	Rorug05G0176300
rosa_samantha	Rh5AG262700 Rh5BG267500 Rh5CG300200 Rh5DG273900
rosa_wichuraiana	Rw5G024560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	507, 665
AccB7I	CCANNNNNTGG	2 cut(s)	449, 876
AccII	CGCG	2 cut(s)	727, 740
AccIII	TCCGGA	1 cut(s)	395
AclWI	GGATC	3 cut(s)	387, 400, 581
AcoI	YGGCCR	1 cut(s)	728
AcyI	GRCGYC	2 cut(s)	508, 714
AfaI	GTAC	1 cut(s)	404
AfiI	CCNNNNNNNGG	4 cut(s)	265, 449, 817, 876
AgsI	TTSAA	2 cut(s)	905, 932
AjnI	CCWGG	1 cut(s)	869
AjuI	GAANNNNNNNTTGG	2 cut(s)	788, 820
AleI	CACNNNNGTG	1 cut(s)	83
AluBI	AGCT	5 cut(s)	133, 326, 539, 802, 891
AluI	AGCT	5 cut(s)	133, 326, 539, 802, 891
Alw21I	GWGCWC	2 cut(s)	284, 620
Alw26I	GTCTC	2 cut(s)	258, 908
Alw44I	GTGCAC	1 cut(s)	280
AlwI	GGATC	3 cut(s)	387, 400, 581
Ama87I	CYCGRG	1 cut(s)	344
Aor13HI	TCCGGA	1 cut(s)	395
AoxI	GGCC	6 cut(s)	432, 475, 488, 696, 728, 934
ApaLI	GTGCAC	1 cut(s)	280
ApeKI	GCWGC	2 cut(s)	323, 754
Asp700I	GAANNNNTTC	1 cut(s)	821
AspLEI	GCGC	1 cut(s)	510
AspS9I	GGNCC	3 cut(s)	432, 452, 808
AsuHPI	GGTGA	3 cut(s)	174, 248, 559
AvaI	CYCGRG	1 cut(s)	344
AvaII	GGWCC	2 cut(s)	452, 808
BaeGI	GKGCMC	2 cut(s)	284, 661
BamHI	GGATCC	1 cut(s)	392
BanI	GGYRCC	2 cut(s)	507, 665
BanII	GRGCYC	2 cut(s)	168, 351
BauI	CACGAG	1 cut(s)	540
Bbv12I	GWGCWC	2 cut(s)	284, 620
BbvI	GCAGC	2 cut(s)	335, 766
BccI	CCATC	3 cut(s)	215, 486, 832
BceAI	ACGGC	1 cut(s)	679
BciT130I	CCWGG	1 cut(s)	871
BcoDI	GTCTC	2 cut(s)	258, 908
BfaI	CTAG	9 cut(s)	81, 134, 161, 273, 293, 302, 504, 536, 888
BfmI	CTRYAG	1 cut(s)	567
BfoI	RGCGCY	1 cut(s)	511
Bme1390I	CCNGG	1 cut(s)	871
Bme18I	GGWCC	2 cut(s)	452, 808
BmeT110I	CYCGRG	1 cut(s)	344
BmgT120I	GGNCC	3 cut(s)	432, 452, 808
BmiI	GGNNCC	6 cut(s)	394, 433, 454, 509, 625, 667
BmrFI	CCNGG	1 cut(s)	871
BoxI	GACNNNNGTC	1 cut(s)	871
BsaHI	GRCGYC	2 cut(s)	508, 714
BsaI	GGTCTC	1 cut(s)	258
BsaJI	CCNNGG	5 cut(s)	108, 388, 472, 491, 869
BsaWI	WCCGGW	1 cut(s)	395
Bsc4I	CCNNNNNNNGG	4 cut(s)	265, 449, 817, 876
Bse118I	RCCGGY	1 cut(s)	750
Bse1I	ACTGG	2 cut(s)	590, 686
Bse3DI	GCAATG	1 cut(s)	88
BseAI	TCCGGA	1 cut(s)	395
BseBI	CCWGG	1 cut(s)	871
BseDI	CCNNGG	5 cut(s)	108, 388, 472, 491, 869
BseGI	GGATG	2 cut(s)	56, 207
BseLI	CCNNNNNNNGG	4 cut(s)	265, 449, 817, 876
BseMI	GCAATG	1 cut(s)	88
BseMII	CTCAG	1 cut(s)	903
BseNI	ACTGG	2 cut(s)	590, 686
BseRI	GAGGAG	1 cut(s)	207
BseSI	GKGCMC	2 cut(s)	284, 661
BseX3I	CGGCCG	1 cut(s)	728
BseXI	GCAGC	2 cut(s)	335, 766
BsgI	GTGCAG	1 cut(s)	342
Bsh1236I	CGCG	2 cut(s)	727, 740
Bsh1285I	CGRYCG	1 cut(s)	731
BshFI	GGCC	6 cut(s)	434, 477, 490, 698, 730, 936
BshNI	GGYRCC	2 cut(s)	507, 665
BsiEI	CGRYCG	1 cut(s)	731
BsiHKAI	GWGCWC	2 cut(s)	284, 620
BsiHKCI	CYCGRG	1 cut(s)	344
BsiSI	CCGG	2 cut(s)	396, 751
BslFI	GGGAC	1 cut(s)	438
BslI	CCNNNNNNNGG	4 cut(s)	265, 449, 817, 876
BsmAI	GTCTC	2 cut(s)	258, 908
BsmFI	GGGAC	1 cut(s)	438
BsnI	GGCC	6 cut(s)	434, 477, 490, 698, 730, 936
Bso31I	GGTCTC	1 cut(s)	258
BsoBI	CYCGRG	1 cut(s)	344
Bsp1286I	GDGCHC	5 cut(s)	168, 284, 351, 620, 661
Bsp13I	TCCGGA	1 cut(s)	395
Bsp143I	GATC	4 cut(s)	392, 459, 498, 586
BspANI	GGCC	6 cut(s)	434, 477, 490, 698, 730, 936
BspCNI	CTCAG	1 cut(s)	904
BspEI	TCCGGA	1 cut(s)	395
BspFNI	CGCG	2 cut(s)	727, 740
BspLI	GGNNCC	6 cut(s)	394, 433, 454, 509, 625, 667
BspPI	GGATC	3 cut(s)	387, 400, 581
BspT107I	GGYRCC	2 cut(s)	507, 665
BspTNI	GGTCTC	1 cut(s)	258
BsrDI	GCAATG	1 cut(s)	88
BsrFI	RCCGGY	1 cut(s)	750
BsrI	ACTGG	2 cut(s)	590, 686
BssAI	RCCGGY	1 cut(s)	750
BssECI	CCNNGG	5 cut(s)	108, 388, 472, 491, 869
BssMI	GATC	4 cut(s)	392, 459, 498, 586
BssNI	GRCGYC	2 cut(s)	508, 714
BssSI	CACGAG	1 cut(s)	540
BssT1I	CCWWGG	3 cut(s)	108, 472, 491
Bst2BI	CACGAG	1 cut(s)	540
Bst2UI	CCWGG	1 cut(s)	871
Bst4CI	ACNGT	3 cut(s)	260, 289, 645
BstACI	GRCGYC	2 cut(s)	508, 714
BstC8I	GCNNGC	3 cut(s)	361, 381, 680
BstDEI	CTNAG	1 cut(s)	912
BstF5I	GGATG	2 cut(s)	56, 207
BstFNI	CGCG	2 cut(s)	727, 740
BstH2I	RGCGCY	1 cut(s)	511
BstHHI	GCGC	1 cut(s)	510
BstKTI	GATC	4 cut(s)	395, 462, 501, 589
BstMAI	GTCTC	2 cut(s)	258, 908
BstMBI	GATC	4 cut(s)	392, 459, 498, 586
BstMCI	CGRYCG	1 cut(s)	731
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 269, 672
BstNI	CCWGG	1 cut(s)	871
BstNSI	RCATGY	1 cut(s)	533
BstPAI	GACNNNNGTC	1 cut(s)	871
BstSCI	CCNGG	1 cut(s)	869
BstSFI	CTRYAG	1 cut(s)	567
BstSLI	GKGCMC	2 cut(s)	284, 661
BstUI	CGCG	2 cut(s)	727, 740
BstV1I	GCAGC	2 cut(s)	335, 766
BstX2I	RGATCY	1 cut(s)	392
BstYI	RGATCY	1 cut(s)	392
BstZI	CGGCCG	1 cut(s)	728
BsuRI	GGCC	6 cut(s)	434, 477, 490, 698, 730, 936
BtsCI	GGATG	2 cut(s)	56, 207
BtsI	GCAGTG	2 cut(s)	149, 618
BtsIMutI	CAGTG	2 cut(s)	149, 618
Cac8I	GCNNGC	3 cut(s)	361, 381, 680
CciNI	GCGGCCGC	1 cut(s)	728
CfoI	GCGC	1 cut(s)	510
Cfr10I	RCCGGY	1 cut(s)	750
Cfr13I	GGNCC	3 cut(s)	432, 452, 808
CseI	GACGC	1 cut(s)	703
Csp6I	GTAC	1 cut(s)	403
CspCI	CAANNNNNGTGG	2 cut(s)	409, 444
CviAII	CATG	4 cut(s)	249, 264, 530, 650
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	1 cut(s)	912
DinI	GGCGCC	1 cut(s)	509
DpnI	GATC	4 cut(s)	394, 461, 500, 588
DpnII	GATC	4 cut(s)	392, 459, 498, 586
EaeI	YGGCCR	1 cut(s)	728
EagI	CGGCCG	1 cut(s)	728
EciI	GGCGGA	2 cut(s)	62, 85
EclXI	CGGCCG	1 cut(s)	728
Eco130I	CCWWGG	3 cut(s)	108, 472, 491
Eco24I	GRGCYC	2 cut(s)	168, 351
Eco31I	GGTCTC	1 cut(s)	258
Eco47I	GGWCC	2 cut(s)	452, 808
Eco52I	CGGCCG	1 cut(s)	728
Eco88I	CYCGRG	1 cut(s)	344
EcoO109I	RGGNCCY	1 cut(s)	432
EcoRII	CCWGG	1 cut(s)	869
EcoT14I	CCWWGG	3 cut(s)	108, 472, 491
EcoT38I	GRGCYC	2 cut(s)	168, 351
EgeI	GGCGCC	1 cut(s)	509
EheI	GGCGCC	1 cut(s)	509
ErhI	CCWWGG	3 cut(s)	108, 472, 491
FaeI	CATG	4 cut(s)	252, 267, 533, 653
FaqI	GGGAC	1 cut(s)	438
FatI	CATG	4 cut(s)	248, 263, 529, 649
FauI	CCCGC	2 cut(s)	127, 193
FauNDI	CATATG	1 cut(s)	338
FokI	GGATG	2 cut(s)	43, 194
FriOI	GRGCYC	2 cut(s)	168, 351
FspBI	CTAG	9 cut(s)	81, 134, 161, 273, 293, 302, 504, 536, 888
GlaI	GCGC	1 cut(s)	509
HaeII	RGCGCY	1 cut(s)	511
HaeIII	GGCC	6 cut(s)	434, 477, 490, 698, 730, 936
HapII	CCGG	2 cut(s)	396, 751
HgaI	GACGC	1 cut(s)	703
HhaI	GCGC	1 cut(s)	510
Hin1I	GRCGYC	2 cut(s)	508, 714
Hin1II	CATG	4 cut(s)	252, 267, 533, 653
Hin6I	GCGC	1 cut(s)	508
HinP1I	GCGC	1 cut(s)	508
HinfI	GANTC	2 cut(s)	329, 439
HpaII	CCGG	2 cut(s)	396, 751
HphI	GGTGA	3 cut(s)	174, 248, 559
Hpy166II	GTNNAC	3 cut(s)	282, 403, 884
Hpy188I	TCNGA	2 cut(s)	392, 895
Hpy188III	TCNNGA	1 cut(s)	396
Hpy8I	GTNNAC	3 cut(s)	282, 403, 884
HpyAV	CCTTC	1 cut(s)	811
HpyCH4III	ACNGT	3 cut(s)	260, 289, 645
HpyCH4V	TGCA	8 cut(s)	88, 154, 263, 282, 323, 611, 703, 777
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 269, 672
HpyF3I	CTNAG	1 cut(s)	912
Hsp92I	GRCGYC	2 cut(s)	508, 714
Hsp92II	CATG	4 cut(s)	252, 267, 533, 653
HspAI	GCGC	1 cut(s)	508
KasI	GGCGCC	1 cut(s)	507
Kpn2I	TCCGGA	1 cut(s)	395
Kzo9I	GATC	4 cut(s)	392, 459, 498, 586
LmnI	GCTCC	2 cut(s)	98, 629
Lsp1109I	GCAGC	2 cut(s)	335, 766
MaeI	CTAG	9 cut(s)	81, 134, 161, 273, 293, 302, 504, 536, 888
MaeIII	GTNAC	2 cut(s)	313, 547
MalI	GATC	4 cut(s)	394, 461, 500, 588
MboI	GATC	4 cut(s)	392, 459, 498, 586
MboII	GAAGA	2 cut(s)	19, 917
MflI	RGATCY	1 cut(s)	392
MhlI	GDGCHC	5 cut(s)	168, 284, 351, 620, 661
MluCI	AATT	4 cut(s)	421, 444, 512, 769
Mly113I	GGCGCC	1 cut(s)	508
MlyI	GAGTC	1 cut(s)	433
MmeI	TCCRAC	1 cut(s)	543
MnlI	CCTC	8 cut(s)	149, 178, 190, 225, 228, 398, 445, 820
MroI	TCCGGA	1 cut(s)	395
MroXI	GAANNNNTTC	1 cut(s)	821
MseI	TTAA	4 cut(s)	11, 597, 852, 863
MslI	CAYNNNNRTG	2 cut(s)	83, 337
MspA1I	CMGCKG	2 cut(s)	125, 326
MspI	CCGG	2 cut(s)	396, 751
MspR9I	CCNGG	1 cut(s)	871
MvaI	CCWGG	1 cut(s)	871
MvnI	CGCG	2 cut(s)	727, 740
MwoI	GCNNNNNNNGC	3 cut(s)	119, 269, 672
NarI	GGCGCC	1 cut(s)	508
NdeI	CATATG	1 cut(s)	338
NdeII	GATC	4 cut(s)	392, 459, 498, 586
NlaIII	CATG	4 cut(s)	252, 267, 533, 653
NlaIV	GGNNCC	6 cut(s)	394, 433, 454, 509, 625, 667
NmuCI	GTSAC	1 cut(s)	547
NotI	GCGGCCGC	1 cut(s)	728
NspI	RCATGY	1 cut(s)	533
OliI	CACNNNNGTG	1 cut(s)	83
PaeR7I	CTCGAG	1 cut(s)	344
PdmI	GAANNNNTTC	1 cut(s)	821
PfeI	GAWTC	1 cut(s)	329
PflFI	GACNNNGTC	1 cut(s)	250
PflMI	CCANNNNNTGG	2 cut(s)	449, 876
PleI	GAGTC	1 cut(s)	433
PluTI	GGCGCC	1 cut(s)	511
PpsI	GAGTC	1 cut(s)	433
PshAI	GACNNNNGTC	1 cut(s)	871
Psp6I	CCWGG	1 cut(s)	869
PspGI	CCWGG	1 cut(s)	869
PspN4I	GGNNCC	6 cut(s)	394, 433, 454, 509, 625, 667
PspPI	GGNCC	3 cut(s)	432, 452, 808
PspXI	VCTCGAGB	1 cut(s)	344
PsuI	RGATCY	1 cut(s)	392
PsyI	GACNNNGTC	1 cut(s)	250
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
RseI	CAYNNNNRTG	2 cut(s)	83, 337
SaqAI	TTAA	4 cut(s)	11, 597, 852, 863
Sau3AI	GATC	4 cut(s)	392, 459, 498, 586
Sau96I	GGNCC	3 cut(s)	432, 452, 808
SchI	GAGTC	1 cut(s)	433
ScrFI	CCNGG	1 cut(s)	871
SduI	GDGCHC	5 cut(s)	168, 284, 351, 620, 661
SfcI	CTRYAG	1 cut(s)	567
SfoI	GGCGCC	1 cut(s)	509
Sfr274I	CTCGAG	1 cut(s)	344
SinI	GGWCC	2 cut(s)	452, 808
SlaI	CTCGAG	1 cut(s)	344
SmiMI	CAYNNNNRTG	2 cut(s)	83, 337
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	4 cut(s)	421, 444, 512, 769
SspDI	GGCGCC	1 cut(s)	507
SspMI	CTAG	9 cut(s)	81, 134, 161, 273, 293, 302, 504, 536, 888
StyD4I	CCNGG	1 cut(s)	869
StyI	CCWWGG	3 cut(s)	108, 472, 491
TaaI	ACNGT	3 cut(s)	260, 289, 645
TaqI	TCGA	5 cut(s)	245, 345, 437, 462, 825
TasI	AATT	4 cut(s)	421, 444, 512, 769
TauI	GCSGC	8 cut(s)	78, 101, 125, 678, 685, 730, 733, 743
TfiI	GAWTC	1 cut(s)	329
Tru1I	TTAA	4 cut(s)	11, 597, 852, 863
Tru9I	TTAA	4 cut(s)	11, 597, 852, 863
TscAI	CASTG	2 cut(s)	156, 618
TseFI	GTSAC	1 cut(s)	547
TseI	GCWGC	2 cut(s)	323, 754
Tsp45I	GTSAC	1 cut(s)	547
TspDTI	ATGAA	1 cut(s)	638
TspGWI	ACGGA	2 cut(s)	200, 301
TspRI	CASTG	2 cut(s)	156, 618
Tth111I	GACNNNGTC	1 cut(s)	250
Van91I	CCANNNNNTGG	2 cut(s)	449, 876
VneI	GTGCAC	1 cut(s)	280
VpaK11BI	GGWCC	2 cut(s)	452, 808
XceI	RCATGY	1 cut(s)	533
XhoI	CTCGAG	1 cut(s)	344
XmnI	GAANNNNTTC	1 cut(s)	821
XspI	CTAG	9 cut(s)	81, 134, 161, 273, 293, 302, 504, 536, 888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.