FvH4_3g22400

Fatty acid desaturase 4

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
15465188 .. 15466105
918 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g22400.t1

Sequence Viewer

Length: 918 bp
ATGTCTATCTTCACTCAAACCAAGCTCCTCCCAAGCCCCAAGCACCATGTTCACACACTATGCCACCCTCCAGTCCTCCGCACGACTGTCCATTGCTCCATTACCACCACAAAGCCAAAGCCAGTCCCCGAAAAGCTCGTCATCGAACCGCCCTGGCTGCCGCAGCTGGAACCCTCACCCGACATCGCCCGGCCGATGCTCAATGACCCGAGTCTACTATCAACATGGTCACACCGTGCATGGGTAGCGAGCGGGTGCACCACTGTGCTCATTTCTCTAGCTAAATCGGTAGTGGGTGCAGCCAATTCACACATATGGGCCGACCCCATATTAGCGGGCTTGGTCGGGTATGTGTTGGCGGATCTCGGGTCCGGAGTTTACCATTGGGGAATTGACAACTATGGTGGTGCCTCTACTCCAATTTTCGGTGCACAAATAGAAGCATTTCAAGGCCACCATAAGTGGCCATGGACTATCACTAAGCGCCAGTTTGCTAACAACTTACATGCCCTGGCTCGTGTCATTACTTTCACAGTGCTTCCCTTAGACCTTGCTTTTGATGATCCTATTCTTCATGGCTTTGTTGCTGTTTGCTCTGGTTGCATTATGTTTAGTCAACAATTTCATGCTTGGGCTCACGGCACAAAGAGCCGGCTACCACCATTGGTTGTGGCATTGCAAGATTCTGGCATACTTATATCTCGATCGCAACATTCGGCGCACCACCGGCAACCTTACAACAACAACTACTGCATTGTGAGTGGAGTTTGGAACGAGTTTTTGGATAAGCAGAAGGTATTTGAAGCTTTGGAGATGATCTTGTTTTTTAAGCAAGGGTTAAGACCTAGGTCTTGGAGTGAACCTAGCTCTGAGTGGATTGAAGAGGCTGAGACGATTTCTGAACTTGCAGACAATTGA

Protein Analysis

306

Amino Acids

33.94

Weight (kDa)

6.78

Isoelectric Point (pI)

46.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipid_desat PF10520 117 - 285 2.1e-70 Lipid desaturase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 407
AccBSI CCGCTC 1 cut(s) 252
AccI GTMKAC 1 cut(s) 214
AccIII TCCGGA 1 cut(s) 371
AciI CCGC 6 cut(s) 79, 149, 161, 252, 335, 359
AclWI GGATC 2 cut(s) 369, 557
AcoI YGGCCR 2 cut(s) 191, 464
AdeI CACNNNGTG 1 cut(s) 236
AfiI CCNNNNNNNGG 2 cut(s) 241, 425
AgsI TTSAA 3 cut(s) 449, 803, 881
AjnI CCWGG 2 cut(s) 152, 510
AjuI GAANNNNNNNTTGG 2 cut(s) 764, 796
AleI CACNNNNGTG 1 cut(s) 263
AluBI AGCT 6 cut(s) 25, 136, 166, 281, 806, 867
AluI AGCT 6 cut(s) 25, 136, 166, 281, 806, 867
Alw21I GWGCWC 3 cut(s) 260, 270, 433
Alw26I GTCTC 1 cut(s) 884
Alw44I GTGCAC 2 cut(s) 256, 429
AlwI GGATC 2 cut(s) 369, 557
Ama87I CYCGRG 2 cut(s) 208, 365
Aor13HI TCCGGA 1 cut(s) 371
AoxI GGCC 4 cut(s) 191, 318, 451, 464
ApaLI GTGCAC 2 cut(s) 256, 429
ApeKI GCWGC 3 cut(s) 157, 163, 299
ArsI GACNNNNNNTTYG 4 cut(s) 123, 155, 539, 571
Asp700I GAANNNNTTC 1 cut(s) 444
AspA2I CCTAGG 1 cut(s) 845
AspLEI GCGC 2 cut(s) 486, 721
AspS9I GGNCC 2 cut(s) 318, 369
AsuC2I CCSGG 1 cut(s) 190
AsuHPI GGTGA 1 cut(s) 168
AvaI CYCGRG 2 cut(s) 208, 365
AvaII GGWCC 1 cut(s) 369
AvrII CCTAGG 1 cut(s) 845
BaeGI GKGCMC 2 cut(s) 260, 433
BalI TGGCCA 1 cut(s) 466
BanI GGYRCC 1 cut(s) 407
BanII GRGCYC 1 cut(s) 637
BauI CACGAG 1 cut(s) 516
Bbv12I GWGCWC 3 cut(s) 260, 270, 433
BbvI GCAGC 3 cut(s) 144, 175, 311
BceAI ACGGC 1 cut(s) 655
BciT130I CCWGG 2 cut(s) 154, 512
BcnI CCSGG 1 cut(s) 190
BcoDI GTCTC 1 cut(s) 884
BfaI CTAG 3 cut(s) 278, 846, 864
BfoI RGCGCY 1 cut(s) 487
BisI GCNGC 4 cut(s) 158, 161, 164, 300
BlnI CCTAGG 1 cut(s) 845
BlsI GCNGC 4 cut(s) 159, 162, 165, 301
Bme1390I CCNGG 3 cut(s) 154, 190, 512
Bme18I GGWCC 1 cut(s) 369
BmeT110I CYCGRG 2 cut(s) 208, 365
BmgT120I GGNCC 2 cut(s) 318, 369
BmiI GGNNCC 3 cut(s) 171, 370, 409
BmrFI CCNGG 3 cut(s) 154, 190, 512
BmsI GCATC 1 cut(s) 186
BoxI GACNNNNGTC 2 cut(s) 210, 847
BpmI CTGGAG 1 cut(s) 54
BpuMI CCSGG 1 cut(s) 190
BsaJI CCNNGG 4 cut(s) 152, 467, 510, 845
BsaWI WCCGGW 1 cut(s) 371
Bsc4I CCNNNNNNNGG 2 cut(s) 241, 425
Bse118I RCCGGY 2 cut(s) 651, 726
Bse1I ACTGG 3 cut(s) 71, 122, 487
Bse3DI GCAATG 2 cut(s) 91, 674
BseAI TCCGGA 1 cut(s) 371
BseBI CCWGG 2 cut(s) 154, 512
BseDI CCNNGG 4 cut(s) 152, 467, 510, 845
BseLI CCNNNNNNNGG 2 cut(s) 241, 425
BseMI GCAATG 2 cut(s) 91, 674
BseMII CTCAG 2 cut(s) 861, 879
BseNI ACTGG 3 cut(s) 71, 122, 487
BseRI GAGGAG 1 cut(s) 17
BseSI GKGCMC 2 cut(s) 260, 433
BseX3I CGGCCG 1 cut(s) 191
BseXI GCAGC 3 cut(s) 144, 175, 311
BsgI GTGCAG 1 cut(s) 318
Bsh1285I CGRYCG 2 cut(s) 194, 707
BshFI GGCC 4 cut(s) 193, 320, 453, 466
BshNI GGYRCC 1 cut(s) 407
BsiEI CGRYCG 2 cut(s) 194, 707
BsiHKAI GWGCWC 3 cut(s) 260, 270, 433
BsiHKCI CYCGRG 2 cut(s) 208, 365
BsiSI CCGG 4 cut(s) 190, 372, 652, 727
BslFI GGGAC 1 cut(s) 110
BslI CCNNNNNNNGG 2 cut(s) 241, 425
BsmAI GTCTC 1 cut(s) 884
BsmBI CGTCTC 1 cut(s) 884
BsmFI GGGAC 1 cut(s) 110
BsnI GGCC 4 cut(s) 193, 320, 453, 466
BsoBI CYCGRG 2 cut(s) 208, 365
Bsp1286I GDGCHC 4 cut(s) 260, 270, 433, 637
Bsp13I TCCGGA 1 cut(s) 371
Bsp143I GATC 4 cut(s) 361, 562, 704, 816
Bsp19I CCATGG 1 cut(s) 467
BspACI CCGC 6 cut(s) 79, 149, 161, 252, 335, 359
BspANI GGCC 4 cut(s) 193, 320, 453, 466
BspCNI CTCAG 2 cut(s) 862, 880
BspEI TCCGGA 1 cut(s) 371
BspLI GGNNCC 3 cut(s) 171, 370, 409
BspPI GGATC 2 cut(s) 369, 557
BspT107I GGYRCC 1 cut(s) 407
BsrBI CCGCTC 1 cut(s) 252
BsrDI GCAATG 2 cut(s) 91, 674
BsrFI RCCGGY 2 cut(s) 651, 726
BsrI ACTGG 3 cut(s) 71, 122, 487
BssAI RCCGGY 2 cut(s) 651, 726
BssECI CCNNGG 4 cut(s) 152, 467, 510, 845
BssMI GATC 4 cut(s) 361, 562, 704, 816
BssSI CACGAG 1 cut(s) 516
BssT1I CCWWGG 2 cut(s) 467, 845
Bst2BI CACGAG 1 cut(s) 516
Bst2UI CCWGG 2 cut(s) 154, 512
Bst4CI ACNGT 4 cut(s) 88, 236, 265, 535
Bst6I CTCTTC 1 cut(s) 876
BstC8I GCNNGC 3 cut(s) 250, 337, 653
BstDEI CTNAG 4 cut(s) 480, 544, 870, 888
BstDSI CCRYGG 1 cut(s) 467
BstH2I RGCGCY 1 cut(s) 487
BstHHI GCGC 2 cut(s) 486, 721
BstKTI GATC 4 cut(s) 364, 565, 707, 819
BstMAI GTCTC 1 cut(s) 884
BstMBI GATC 4 cut(s) 361, 562, 704, 816
BstMCI CGRYCG 2 cut(s) 194, 707
BstMWI GCNNNNNNNGC 6 cut(s) 157, 163, 245, 600, 648, 727
BstNI CCWGG 2 cut(s) 154, 512
BstNSI RCATGY 1 cut(s) 509
BstPAI GACNNNNGTC 2 cut(s) 210, 847
BstSCI CCNGG 3 cut(s) 152, 188, 510
BstSLI GKGCMC 2 cut(s) 260, 433
BstV1I GCAGC 3 cut(s) 144, 175, 311
BstX2I RGATCY 1 cut(s) 361
BstYI RGATCY 1 cut(s) 361
BstZI CGGCCG 1 cut(s) 191
BsuRI GGCC 4 cut(s) 193, 320, 453, 466
BtgI CCRYGG 1 cut(s) 467
BtgZI GCGATG 1 cut(s) 169
BtsIMutI CAGTG 2 cut(s) 261, 540
Cac8I GCNNGC 3 cut(s) 250, 337, 653
CfoI GCGC 2 cut(s) 486, 721
Cfr10I RCCGGY 2 cut(s) 651, 726
Cfr13I GGNCC 2 cut(s) 318, 369
CspCI CAANNNNNGTGG 2 cut(s) 385, 420
CviAII CATG 7 cut(s) 47, 225, 240, 468, 506, 575, 626
DdeI CTNAG 4 cut(s) 480, 544, 870, 888
DpnI GATC 4 cut(s) 363, 564, 706, 818
DpnII GATC 4 cut(s) 361, 562, 704, 816
DraIII CACNNNGTG 1 cut(s) 236
EaeI YGGCCR 2 cut(s) 191, 464
EagI CGGCCG 1 cut(s) 191
Eam1104I CTCTTC 1 cut(s) 876
EarI CTCTTC 1 cut(s) 876
EciI GGCGGA 1 cut(s) 374
EclXI CGGCCG 1 cut(s) 191
Eco130I CCWWGG 2 cut(s) 467, 845
Eco24I GRGCYC 1 cut(s) 637
Eco47I GGWCC 1 cut(s) 369
Eco52I CGGCCG 1 cut(s) 191
Eco88I CYCGRG 2 cut(s) 208, 365
EcoRII CCWGG 2 cut(s) 152, 510
EcoT14I CCWWGG 2 cut(s) 467, 845
EcoT38I GRGCYC 1 cut(s) 637
ErhI CCWWGG 2 cut(s) 467, 845
Esp3I CGTCTC 1 cut(s) 884
FaeI CATG 7 cut(s) 50, 228, 243, 471, 509, 578, 629
FaqI GGGAC 1 cut(s) 110
FatI CATG 7 cut(s) 46, 224, 239, 467, 505, 574, 625
FauI CCCGC 2 cut(s) 245, 328
FauNDI CATATG 1 cut(s) 314
FblI GTMKAC 1 cut(s) 214
Fnu4HI GCNGC 4 cut(s) 158, 161, 164, 300
FriOI GRGCYC 1 cut(s) 637
Fsp4HI GCNGC 4 cut(s) 158, 161, 164, 300
FspBI CTAG 3 cut(s) 278, 846, 864
GlaI GCGC 2 cut(s) 485, 720
GluI GCNGC 4 cut(s) 158, 161, 164, 300
GsuI CTGGAG 1 cut(s) 54
HaeII RGCGCY 1 cut(s) 487
HaeIII GGCC 4 cut(s) 193, 320, 453, 466
HapII CCGG 4 cut(s) 190, 372, 652, 727
HhaI GCGC 2 cut(s) 486, 721
Hin1II CATG 7 cut(s) 50, 228, 243, 471, 509, 578, 629
Hin6I GCGC 2 cut(s) 484, 719
HinP1I GCGC 2 cut(s) 484, 719
HincII GTYRAC 1 cut(s) 617
HindII GTYRAC 1 cut(s) 617
HindIII AAGCTT 1 cut(s) 804
HinfI GANTC 2 cut(s) 211, 683
HpaII CCGG 4 cut(s) 190, 372, 652, 727
HphI GGTGA 1 cut(s) 168
Hpy166II GTNNAC 7 cut(s) 52, 215, 258, 379, 431, 617, 860
Hpy188I TCNGA 2 cut(s) 871, 901
Hpy188III TCNNGA 2 cut(s) 372, 702
Hpy8I GTNNAC 7 cut(s) 52, 215, 258, 379, 431, 617, 860
HpyAV CCTTC 1 cut(s) 787
HpyCH4III ACNGT 4 cut(s) 88, 236, 265, 535
HpyCH4V TGCA 8 cut(s) 239, 258, 299, 431, 603, 679, 753, 908
HpyF10VI GCNNNNNNNGC 6 cut(s) 157, 163, 245, 600, 648, 727
HpyF3I CTNAG 4 cut(s) 480, 544, 870, 888
Hsp92II CATG 7 cut(s) 50, 228, 243, 471, 509, 578, 629
HspAI GCGC 2 cut(s) 484, 719
Kpn2I TCCGGA 1 cut(s) 371
KroI GCCGGC 1 cut(s) 651
KroNI GCCGGC 1 cut(s) 653
Kzo9I GATC 4 cut(s) 361, 562, 704, 816
LmnI GCTCC 2 cut(s) 30, 101
Lsp1109I GCAGC 3 cut(s) 144, 175, 311
LweI GCATC 1 cut(s) 186
MaeI CTAG 3 cut(s) 278, 846, 864
MaeIII GTNAC 1 cut(s) 228
MalI GATC 4 cut(s) 363, 564, 706, 818
MbiI CCGCTC 1 cut(s) 252
MboI GATC 4 cut(s) 361, 562, 704, 816
MboII GAAGA 2 cut(s) 563, 893
MfeI CAATTG 1 cut(s) 913
MflI RGATCY 1 cut(s) 361
MhlI GDGCHC 4 cut(s) 260, 270, 433, 637
MlsI TGGCCA 1 cut(s) 466
MluCI AATT 5 cut(s) 304, 390, 420, 620, 913
MluNI TGGCCA 1 cut(s) 466
MlyI GAGTC 1 cut(s) 220
MnlI CCTC 6 cut(s) 38, 78, 86, 184, 421, 877
Mox20I TGGCCA 1 cut(s) 466
MroI TCCGGA 1 cut(s) 371
MroNI GCCGGC 1 cut(s) 651
MroXI GAANNNNTTC 1 cut(s) 444
MscI TGGCCA 1 cut(s) 466
MseI TTAA 2 cut(s) 828, 839
MslI CAYNNNNRTG 2 cut(s) 263, 313
Msp20I TGGCCA 1 cut(s) 466
MspA1I CMGCKG 1 cut(s) 166
MspI CCGG 4 cut(s) 190, 372, 652, 727
MspR9I CCNGG 3 cut(s) 154, 190, 512
MunI CAATTG 1 cut(s) 913
MvaI CCWGG 2 cut(s) 154, 512
MwoI GCNNNNNNNGC 6 cut(s) 157, 163, 245, 600, 648, 727
NaeI GCCGGC 1 cut(s) 653
NciI CCSGG 1 cut(s) 190
NcoI CCATGG 1 cut(s) 467
NdeI CATATG 1 cut(s) 314
NdeII GATC 4 cut(s) 361, 562, 704, 816
NgoMIV GCCGGC 1 cut(s) 651
NlaIII CATG 7 cut(s) 50, 228, 243, 471, 509, 578, 629
NlaIV GGNNCC 3 cut(s) 171, 370, 409
NmuCI GTSAC 1 cut(s) 228
NspI RCATGY 1 cut(s) 509
OliI CACNNNNGTG 1 cut(s) 263
PdiI GCCGGC 1 cut(s) 653
PdmI GAANNNNTTC 1 cut(s) 444
PfeI GAWTC 1 cut(s) 683
PkrI GCNGC 4 cut(s) 159, 162, 165, 301
Ple19I CGATCG 1 cut(s) 707
PleI GAGTC 1 cut(s) 219
PpsI GAGTC 1 cut(s) 219
PshAI GACNNNNGTC 2 cut(s) 210, 847
Psp6I CCWGG 2 cut(s) 152, 510
PspGI CCWGG 2 cut(s) 152, 510
PspN4I GGNNCC 3 cut(s) 171, 370, 409
PspPI GGNCC 2 cut(s) 318, 369
PsuI RGATCY 1 cut(s) 361
PvuI CGATCG 1 cut(s) 707
PvuII CAGCTG 1 cut(s) 166
RseI CAYNNNNRTG 2 cut(s) 263, 313
SaqAI TTAA 2 cut(s) 828, 839
SatI GCNGC 4 cut(s) 158, 161, 164, 300
Sau3AI GATC 4 cut(s) 361, 562, 704, 816
Sau96I GGNCC 2 cut(s) 318, 369
SchI GAGTC 1 cut(s) 220
ScrFI CCNGG 3 cut(s) 154, 190, 512
SduI GDGCHC 4 cut(s) 260, 270, 433, 637
SfaNI GCATC 1 cut(s) 186
SinI GGWCC 1 cut(s) 369
SmiMI CAYNNNNRTG 2 cut(s) 263, 313
Sse9I AATT 5 cut(s) 304, 390, 420, 620, 913
SsiI CCGC 6 cut(s) 79, 149, 161, 252, 335, 359
SspMI CTAG 3 cut(s) 278, 846, 864
StyD4I CCNGG 3 cut(s) 152, 188, 510
StyI CCWWGG 2 cut(s) 467, 845
TaaI ACNGT 4 cut(s) 88, 236, 265, 535
TaqI TCGA 2 cut(s) 144, 703
TasI AATT 5 cut(s) 304, 390, 420, 620, 913
TauI GCSGC 1 cut(s) 163
TfiI GAWTC 1 cut(s) 683
Tru1I TTAA 2 cut(s) 828, 839
Tru9I TTAA 2 cut(s) 828, 839
TscAI CASTG 2 cut(s) 268, 540
TseFI GTSAC 1 cut(s) 228
TseI GCWGC 3 cut(s) 157, 163, 299
Tsp45I GTSAC 1 cut(s) 228
TspDTI ATGAA 2 cut(s) 563, 614
TspRI CASTG 2 cut(s) 268, 540
VneI GTGCAC 2 cut(s) 256, 429
VpaK11BI GGWCC 1 cut(s) 369
XceI RCATGY 1 cut(s) 509
XmaJI CCTAGG 1 cut(s) 845
XmiI GTMKAC 1 cut(s) 214
XmnI GAANNNNTTC 1 cut(s) 444
XspI CTAG 3 cut(s) 278, 846, 864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.