Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0011204

Physical Location & Seq

Genomic Coordinates Reverse (-)

33767124 .. 33767855

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033890

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGCCAAGTGATGAAAGTTTACTGTCAACATGGTCTCACTGTGCGTGGGTAGCAAGTGGGTTCATCACTGTGCTCATTTCGCTAGCCAACTCCATAATAAGTGCCGCCCATTCACAAATATGGGTCAAGCCCATTTTAGCGGGACTGGTCGGGTACTTGCTGGCGGATCTCGGGTCCGGATTGTACCATTGGGCGATTAACAATTGTGGCAGTGCCTCAACTCCAATATTTGGTAGCCATATAGAGGCATTTCGAATTCACCACAACCAACAATTTCATGCTTGGGCTCATGGAACAAATAAGAGTCTGCTACCACCATTAGTGGCGACATTGCAAGATTTCGGCATCCTGATATCTCGGTCGCAACATTCTGTGCACCATAAGCAACCTTTTAACAAAAGTTACTGCATAGTGAGTGGAATTTGGAATGAGTTCTTGGACAAGCATAAGGTTTTCGAGGAGTTGGAAATGATCATATTTTCTAAGCTAGAATTAAGACCCAGGTCTTGGAATGAACCTTCCTCTGAGTGGACTGAAGAAGCTGAGACTACTTCTGAGGTAGTAAATGTAATAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006464 GO:0006508 GO:0006511 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009057 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009941 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016053 GO:0016491 GO:0016567 GO:0016705 GO:0016740 GO:0019538 GO:0019637 GO:0019752 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0030433 GO:0031090 GO:0031625 GO:0031967 GO:0031969 GO:0031975 GO:0032446 GO:0032787 GO:0033554 GO:0033559 GO:0034976 GO:0036211 GO:0036503 GO:0042170 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044281 GO:0044283 GO:0044389 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046471 GO:0046486 GO:0050896 GO:0051603 GO:0051716 GO:0052637 GO:0055114 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0072330 GO:0080167 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901698

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM189_B_dmain

Protein Analysis

193

Amino Acids

21.52

Weight (kDa)

6.02

Isoelectric Point (pI)

43.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipid_desat	PF10520	52 - 90	3.6e-12	Lipid desaturase domain
Lipid_desat	PF10520	90 - 170	2.8e-29	Lipid desaturase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27030
fragaria_vesca	FvH4_3g22400
malus_domestica	MD03G1205300.v1.1 MD11G1221200.v1.1
prunus_persica	Prupe.4G210500_v2.0.a1 Prupe.4G210600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0039071
rosa_laevigata	RLG00000033888 RLG00000033890 RLG00000033891
rosa_multiflora	Rmu_co8409277.1_g000001 Rmu_sc0000533.1_g000033 Rmu_sc0007753.1_g000004
rosa_roxburghii	Rroxscaffold_1G00042040
rosa_rugosa	Rorug05G0176300
rosa_samantha	Rh5AG262700 Rh5BG267500 Rh5CG300200 Rh5DG273900
rosa_wichuraiana	Rw5G024560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	230, 507
AccIII	TCCGGA	1 cut(s)	176
AciI	CCGC	3 cut(s)	105, 140, 164
AclWI	GGATC	1 cut(s)	174
AcsI	RAATTY	2 cut(s)	255, 420
AcuI	CTGAAG	1 cut(s)	555
AfaI	GTAC	2 cut(s)	155, 185
AfiI	CCNNNNNNNGG	4 cut(s)	230, 244, 507, 528
AjnI	CCWGG	1 cut(s)	500
AjuI	GAANNNNNNNTTGG	2 cut(s)	419, 451
AluBI	AGCT	2 cut(s)	487, 542
AluI	AGCT	2 cut(s)	487, 542
Alw21I	GWGCWC	2 cut(s)	75, 378
Alw26I	GTCTC	2 cut(s)	39, 539
Alw44I	GTGCAC	1 cut(s)	374
AlwI	GGATC	1 cut(s)	174
Ama87I	CYCGRG	1 cut(s)	170
Aor13HI	TCCGGA	1 cut(s)	176
ApaLI	GTGCAC	1 cut(s)	374
ApoI	RAATTY	2 cut(s)	255, 420
Asp700I	GAANNNNTTC	1 cut(s)	431
AspS9I	GGNCC	1 cut(s)	174
AsuHPI	GGTGA	1 cut(s)	251
AsuII	TTCGAA	1 cut(s)	253
AsuNHI	GCTAGC	1 cut(s)	82
AvaI	CYCGRG	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	174
BaeGI	GKGCMC	1 cut(s)	378
BanII	GRGCYC	1 cut(s)	289
Bbv12I	GWGCWC	2 cut(s)	75, 378
BciT130I	CCWGG	1 cut(s)	502
BclI	TGATCA	1 cut(s)	471
BcoDI	GTCTC	2 cut(s)	39, 539
BfaI	CTAG	2 cut(s)	83, 488
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
Bme1390I	CCNGG	1 cut(s)	502
Bme18I	GGWCC	1 cut(s)	174
BmeT110I	CYCGRG	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	174
BmiI	GGNNCC	1 cut(s)	175
BmrFI	CCNGG	1 cut(s)	502
BmsI	GCATC	1 cut(s)	354
BmtI	GCTAGC	1 cut(s)	86
BoxI	GACNNNNGTC	1 cut(s)	502
Bpu14I	TTCGAA	1 cut(s)	253
BsaI	GGTCTC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	500
BsaWI	WCCGGW	1 cut(s)	176
Bsc4I	CCNNNNNNNGG	4 cut(s)	230, 244, 507, 528
Bse1I	ACTGG	1 cut(s)	150
Bse3DI	GCAATG	1 cut(s)	329
BseAI	TCCGGA	1 cut(s)	176
BseBI	CCWGG	1 cut(s)	502
BseDI	CCNNGG	1 cut(s)	500
BseGI	GGATG	1 cut(s)	345
BseLI	CCNNNNNNNGG	4 cut(s)	230, 244, 507, 528
BseMI	GCAATG	1 cut(s)	329
BseMII	CTCAG	3 cut(s)	516, 534, 546
BseNI	ACTGG	1 cut(s)	150
BseRI	GAGGAG	1 cut(s)	473
BseSI	GKGCMC	1 cut(s)	378
Bsh1285I	CGRYCG	1 cut(s)	362
BsiEI	CGRYCG	1 cut(s)	362
BsiHKAI	GWGCWC	2 cut(s)	75, 378
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	177
BslFI	GGGAC	1 cut(s)	156
BslI	CCNNNNNNNGG	4 cut(s)	230, 244, 507, 528
BsmAI	GTCTC	2 cut(s)	39, 539
BsmFI	GGGAC	1 cut(s)	156
Bso31I	GGTCTC	1 cut(s)	39
BsoBI	CYCGRG	1 cut(s)	170
Bsp119I	TTCGAA	1 cut(s)	253
Bsp1286I	GDGCHC	3 cut(s)	75, 289, 378
Bsp13I	TCCGGA	1 cut(s)	176
Bsp143I	GATC	2 cut(s)	166, 471
BspACI	CCGC	3 cut(s)	105, 140, 164
BspCNI	CTCAG	3 cut(s)	517, 535, 547
BspEI	TCCGGA	1 cut(s)	176
BspLI	GGNNCC	1 cut(s)	175
BspOI	GCTAGC	1 cut(s)	86
BspPI	GGATC	1 cut(s)	174
BspT104I	TTCGAA	1 cut(s)	253
BspTNI	GGTCTC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	329
BsrI	ACTGG	1 cut(s)	150
BssECI	CCNNGG	1 cut(s)	500
BssMI	GATC	2 cut(s)	166, 471
Bst2UI	CCWGG	1 cut(s)	502
Bst4CI	ACNGT	3 cut(s)	24, 41, 70
BstBI	TTCGAA	1 cut(s)	253
BstC8I	GCNNGC	2 cut(s)	84, 162
BstDEI	CTNAG	4 cut(s)	483, 525, 543, 555
BstF5I	GGATG	1 cut(s)	345
BstKTI	GATC	2 cut(s)	169, 474
BstMAI	GTCTC	2 cut(s)	39, 539
BstMBI	GATC	2 cut(s)	166, 471
BstMCI	CGRYCG	1 cut(s)	362
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 79, 382
BstNI	CCWGG	1 cut(s)	502
BstPAI	GACNNNNGTC	1 cut(s)	502
BstSCI	CCNGG	1 cut(s)	500
BstSLI	GKGCMC	1 cut(s)	378
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BtsCI	GGATG	1 cut(s)	345
BtsI	GCAGTG	1 cut(s)	217
BtsIMutI	CAGTG	3 cut(s)	37, 66, 217
Cac8I	GCNNGC	2 cut(s)	84, 162
Cfr13I	GGNCC	1 cut(s)	174
Csp6I	GTAC	2 cut(s)	154, 184
CviAII	CATG	3 cut(s)	30, 278, 290
CviJI	RGCY	6 cut(s)	86, 130, 237, 287, 487, 542
CviKI_1	RGCY	6 cut(s)	86, 130, 237, 287, 487, 542
CviQI	GTAC	2 cut(s)	154, 184
DdeI	CTNAG	4 cut(s)	483, 525, 543, 555
DpnI	GATC	2 cut(s)	168, 473
DpnII	GATC	2 cut(s)	166, 471
EciI	GGCGGA	1 cut(s)	179
Eco24I	GRGCYC	1 cut(s)	289
Eco31I	GGTCTC	1 cut(s)	39
Eco32I	GATATC	1 cut(s)	354
Eco47I	GGWCC	1 cut(s)	174
Eco57I	CTGAAG	1 cut(s)	555
Eco88I	CYCGRG	1 cut(s)	170
EcoRI	GAATTC	1 cut(s)	255
EcoRII	CCWGG	1 cut(s)	500
EcoRV	GATATC	1 cut(s)	354
EcoT38I	GRGCYC	1 cut(s)	289
FaeI	CATG	3 cut(s)	33, 281, 293
FaqI	GGGAC	1 cut(s)	156
FatI	CATG	3 cut(s)	29, 277, 289
FauI	CCCGC	1 cut(s)	133
FbaI	TGATCA	1 cut(s)	471
Fnu4HI	GCNGC	1 cut(s)	105
FokI	GGATG	1 cut(s)	332
FriOI	GRGCYC	1 cut(s)	289
Fsp4HI	GCNGC	1 cut(s)	105
FspBI	CTAG	2 cut(s)	83, 488
GluI	GCNGC	1 cut(s)	105
HapII	CCGG	1 cut(s)	177
Hin1II	CATG	3 cut(s)	33, 281, 293
HincII	GTYRAC	1 cut(s)	27
HindII	GTYRAC	1 cut(s)	27
HinfI	GANTC	1 cut(s)	304
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	4 cut(s)	20, 27, 376, 531
Hpy188I	TCNGA	2 cut(s)	526, 556
Hpy188III	TCNNGA	2 cut(s)	177, 349
Hpy8I	GTNNAC	4 cut(s)	20, 27, 376, 531
HpyAV	CCTTC	1 cut(s)	528
HpyCH4III	ACNGT	3 cut(s)	24, 41, 70
HpyCH4V	TGCA	3 cut(s)	334, 376, 408
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 79, 382
HpyF3I	CTNAG	4 cut(s)	483, 525, 543, 555
Hsp92II	CATG	3 cut(s)	33, 281, 293
Kpn2I	TCCGGA	1 cut(s)	176
Ksp22I	TGATCA	1 cut(s)	471
Kzo9I	GATC	2 cut(s)	166, 471
LpnPI	CCDG	6 cut(s)	131, 146, 190, 362, 487, 514
LweI	GCATC	1 cut(s)	354
MaeI	CTAG	2 cut(s)	83, 488
MaeIII	GTNAC	1 cut(s)	401
MalI	GATC	2 cut(s)	168, 473
MboI	GATC	2 cut(s)	166, 471
MboII	GAAGA	1 cut(s)	548
MfeI	CAATTG	1 cut(s)	202
MflI	RGATCY	1 cut(s)	166
MhlI	GDGCHC	3 cut(s)	75, 289, 378
MluCI	AATT	6 cut(s)	202, 255, 272, 420, 491, 574
MlyI	GAGTC	1 cut(s)	313
MmeI	TCCRAC	1 cut(s)	444
MnlI	CCTC	5 cut(s)	226, 238, 451, 532, 550
MroI	TCCGGA	1 cut(s)	176
MroXI	GAANNNNTTC	1 cut(s)	431
MseI	TTAA	3 cut(s)	198, 393, 494
MslI	CAYNNNNRTG	2 cut(s)	68, 118
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	502
MunI	CAATTG	1 cut(s)	202
MvaI	CCWGG	1 cut(s)	502
MwoI	GCNNNNNNNGC	3 cut(s)	50, 79, 382
NdeII	GATC	2 cut(s)	166, 471
NheI	GCTAGC	1 cut(s)	82
NlaIII	CATG	3 cut(s)	33, 281, 293
NlaIV	GGNNCC	1 cut(s)	175
NspV	TTCGAA	1 cut(s)	253
PdmI	GAANNNNTTC	1 cut(s)	431
PflMI	CCANNNNNTGG	2 cut(s)	230, 507
PkrI	GCNGC	1 cut(s)	106
PleI	GAGTC	1 cut(s)	312
PpsI	GAGTC	1 cut(s)	312
PshAI	GACNNNNGTC	1 cut(s)	502
Psp6I	CCWGG	1 cut(s)	500
PspGI	CCWGG	1 cut(s)	500
PspN4I	GGNNCC	1 cut(s)	175
PspPI	GGNCC	1 cut(s)	174
PsuI	RGATCY	1 cut(s)	166
RsaI	GTAC	2 cut(s)	155, 185
RsaNI	GTAC	2 cut(s)	154, 184
RseI	CAYNNNNRTG	2 cut(s)	68, 118
SaqAI	TTAA	3 cut(s)	198, 393, 494
SatI	GCNGC	1 cut(s)	105
Sau3AI	GATC	2 cut(s)	166, 471
Sau96I	GGNCC	1 cut(s)	174
SchI	GAGTC	1 cut(s)	313
ScrFI	CCNGG	1 cut(s)	502
SduI	GDGCHC	3 cut(s)	75, 289, 378
SetI	ASST	7 cut(s)	391, 453, 489, 506, 520, 544, 561
SfaNI	GCATC	1 cut(s)	354
SfuI	TTCGAA	1 cut(s)	253
SinI	GGWCC	1 cut(s)	174
SmiMI	CAYNNNNRTG	2 cut(s)	68, 118
Sse9I	AATT	6 cut(s)	202, 255, 272, 420, 491, 574
SsiI	CCGC	3 cut(s)	105, 140, 164
SspI	AATATT	1 cut(s)	228
SspMI	CTAG	2 cut(s)	83, 488
StyD4I	CCNGG	1 cut(s)	500
TaaI	ACNGT	3 cut(s)	24, 41, 70
TaqI	TCGA	2 cut(s)	253, 456
TaqII	GACCGA	1 cut(s)	348
TasI	AATT	6 cut(s)	202, 255, 272, 420, 491, 574
TauI	GCSGC	1 cut(s)	107
Tru1I	TTAA	3 cut(s)	198, 393, 494
Tru9I	TTAA	3 cut(s)	198, 393, 494
TscAI	CASTG	3 cut(s)	44, 73, 217
TspDTI	ATGAA	4 cut(s)	27, 52, 266, 528
TspRI	CASTG	3 cut(s)	44, 73, 217
Van91I	CCANNNNNTGG	2 cut(s)	230, 507
VneI	GTGCAC	1 cut(s)	374
VpaK11BI	GGWCC	1 cut(s)	174
XapI	RAATTY	2 cut(s)	255, 420
XmnI	GAANNNNTTC	1 cut(s)	431
XspI	CTAG	2 cut(s)	83, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.