Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0011204

Physical Location & Seq

Genomic Coordinates Reverse (-)

13122670 .. 13123305

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G210500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGTGCTAGTTTCTCTAGCCAAATCCATAATTGGTGTAGCCAATTCACACATATGGCTCGAACCCATTTTAGCAGGCTTGGTGGGCTATGTGTTGGCTGACCTTGGCTCCGGAATTTACCGCTGGGGTATTGACAATTACGGTAGCGCATTAACCCCAATTGTTGGCTCCCAAATTGAGGCATTTCAAGGTCACCACAAGTGGCCATGGACAATAACCAGGCGTCAATTTGCTAACAATTTACCTGTTGTGGCTCGTGTTGTGACTTTCATGGTGCTTCCTATAGACGTCGTTTGTGATGATCCAATTGTTCATGGGTTAGTTGCAGTGTGCTCAGGTTCCATTATGTTTTGCCAACAATTTCATGCTTGGGCTCACAGCACGAAGAGCCAGTTGCCGCCGGTAGTCGTGGCACTGCAAGACTTGGGAATCTTGGTATCGCGGAATCAGCATGCGGCGCACCACCCGAAGCCTTACAACAACAATCACTGCATTGTGAGTGGAGTCTGGAATGGGTTTCTGGACAAGCATAATGTTTTTGAGGCATTGGAGATGTTATTTTTGAAGCAAGGGGTGCGCCCCAAGTCTTGGAGCGAGCCTACCTCTGAATGGACAGAAGAAACTGAGAGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006464 GO:0006508 GO:0006511 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009057 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009941 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016053 GO:0016491 GO:0016567 GO:0016705 GO:0016740 GO:0019538 GO:0019637 GO:0019752 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0030433 GO:0031090 GO:0031625 GO:0031967 GO:0031969 GO:0031975 GO:0032446 GO:0032787 GO:0033554 GO:0033559 GO:0034976 GO:0036211 GO:0036503 GO:0042170 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044281 GO:0044283 GO:0044389 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046471 GO:0046486 GO:0050896 GO:0051603 GO:0051716 GO:0052637 GO:0055114 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0072330 GO:0080167 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901698

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM189_B_dmain

Protein Analysis

212

Amino Acids

23.37

Weight (kDa)

6.39

Isoelectric Point (pI)

36.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27030
fragaria_vesca	FvH4_3g22400
malus_domestica	MD03G1205300.v1.1 MD11G1221200.v1.1
prunus_persica	Prupe.4G210500_v2.0.a1 Prupe.4G210600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0039071
rosa_laevigata	RLG00000033888 RLG00000033890 RLG00000033891
rosa_multiflora	Rmu_co8409277.1_g000001 Rmu_sc0000533.1_g000033 Rmu_sc0007753.1_g000004
rosa_roxburghii	Rroxscaffold_1G00042040
rosa_rugosa	Rorug05G0176300
rosa_samantha	Rh5AG262700 Rh5BG267500 Rh5CG300200 Rh5DG273900
rosa_wichuraiana	Rw5G024560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	291
AccB7I	CCANNNNNTGG	2 cut(s)	164, 588
AccII	CGCG	1 cut(s)	442
AccIII	TCCGGA	1 cut(s)	110
AciI	CCGC	4 cut(s)	121, 398, 442, 455
AclWI	GGATC	1 cut(s)	296
AcoI	YGGCCR	1 cut(s)	203
AcsI	RAATTY	1 cut(s)	114
AcyI	GRCGYC	2 cut(s)	223, 288
AfiI	CCNNNNNNNGG	4 cut(s)	164, 178, 588, 609
AgsI	TTSAA	2 cut(s)	188, 565
AjnI	CCWGG	1 cut(s)	218
Alw21I	GWGCWC	1 cut(s)	335
AlwI	GGATC	1 cut(s)	296
Aor13HI	TCCGGA	1 cut(s)	110
AoxI	GGCC	1 cut(s)	203
ApoI	RAATTY	1 cut(s)	114
AspLEI	GCGC	3 cut(s)	149, 460, 579
AsuHPI	GGTGA	1 cut(s)	185
BalI	TGGCCA	1 cut(s)	205
BanII	GRGCYC	1 cut(s)	376
BauI	CACGAG	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	335
BciT130I	CCWGG	1 cut(s)	220
BfaI	CTAG	2 cut(s)	8, 17
BfmI	CTRYAG	1 cut(s)	282
BisI	GCNGC	2 cut(s)	398, 456
BlsI	GCNGC	2 cut(s)	399, 457
Bme1390I	CCNGG	1 cut(s)	220
BmiI	GGNNCC	3 cut(s)	109, 169, 340
BmrFI	CCNGG	1 cut(s)	220
BplI	GAGNNNNNCTC	2 cut(s)	587, 619
Bpu10I	CCTNAGC	1 cut(s)	334
BsaHI	GRCGYC	2 cut(s)	223, 288
BsaJI	CCNNGG	2 cut(s)	103, 206
BsaWI	WCCGGW	1 cut(s)	110
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	4 cut(s)	164, 178, 588, 609
Bse118I	RCCGGY	1 cut(s)	400
Bse1I	ACTGG	1 cut(s)	391
BseAI	TCCGGA	1 cut(s)	110
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	2 cut(s)	103, 206
BseLI	CCNNNNNNNGG	4 cut(s)	164, 178, 588, 609
BseMII	CTCAG	2 cut(s)	348, 615
BseNI	ACTGG	1 cut(s)	391
BseYI	CCCAGC	1 cut(s)	123
Bsh1236I	CGCG	1 cut(s)	442
BshFI	GGCC	1 cut(s)	205
BsiHKAI	GWGCWC	1 cut(s)	335
BsiSI	CCGG	2 cut(s)	111, 401
BslI	CCNNNNNNNGG	4 cut(s)	164, 178, 588, 609
BsnI	GGCC	1 cut(s)	205
Bsp1286I	GDGCHC	2 cut(s)	335, 376
Bsp13I	TCCGGA	1 cut(s)	110
Bsp143I	GATC	1 cut(s)	301
Bsp19I	CCATGG	1 cut(s)	206
BspACI	CCGC	4 cut(s)	121, 398, 442, 455
BspANI	GGCC	1 cut(s)	205
BspCNI	CTCAG	2 cut(s)	347, 616
BspEI	TCCGGA	1 cut(s)	110
BspFNI	CGCG	1 cut(s)	442
BspLI	GGNNCC	3 cut(s)	109, 169, 340
BspPI	GGATC	1 cut(s)	296
BspQI	GCTCTTC	1 cut(s)	380
BsrFI	RCCGGY	1 cut(s)	400
BsrI	ACTGG	1 cut(s)	391
BssAI	RCCGGY	1 cut(s)	400
BssECI	CCNNGG	2 cut(s)	103, 206
BssMI	GATC	1 cut(s)	301
BssNI	GRCGYC	2 cut(s)	223, 288
BssSI	CACGAG	1 cut(s)	255
BssT1I	CCWWGG	2 cut(s)	103, 206
Bst2BI	CACGAG	1 cut(s)	255
Bst2UI	CCWGG	1 cut(s)	220
Bst4CI	ACNGT	1 cut(s)	143
Bst6I	CTCTTC	1 cut(s)	380
BstACI	GRCGYC	2 cut(s)	223, 288
BstAPI	GCANNNNNTGC	1 cut(s)	574
BstC8I	GCNNGC	3 cut(s)	76, 453, 596
BstDEI	CTNAG	2 cut(s)	334, 624
BstDSI	CCRYGG	1 cut(s)	206
BstEII	GGTNACC	1 cut(s)	191
BstFNI	CGCG	1 cut(s)	442
BstHHI	GCGC	3 cut(s)	149, 460, 579
BstKTI	GATC	1 cut(s)	304
BstMBI	GATC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	5 cut(s)	84, 387, 448, 457, 574
BstNI	CCWGG	1 cut(s)	220
BstNSI	RCATGY	1 cut(s)	455
BstPI	GGTNACC	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	218
BstSFI	CTRYAG	1 cut(s)	282
BstUI	CGCG	1 cut(s)	442
BsuRI	GGCC	1 cut(s)	205
BtgI	CCRYGG	1 cut(s)	206
BtsI	GCAGTG	3 cut(s)	333, 413, 487
BtsIMutI	CAGTG	3 cut(s)	333, 413, 487
Cac8I	GCNNGC	3 cut(s)	76, 453, 596
CfoI	GCGC	3 cut(s)	149, 460, 579
Cfr10I	RCCGGY	1 cut(s)	400
CseI	GACGC	1 cut(s)	212
CviAII	CATG	5 cut(s)	207, 271, 314, 365, 452
DdeI	CTNAG	2 cut(s)	334, 624
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
EaeI	YGGCCR	1 cut(s)	203
Eam1104I	CTCTTC	1 cut(s)	380
EarI	CTCTTC	1 cut(s)	380
Eco130I	CCWWGG	2 cut(s)	103, 206
Eco24I	GRGCYC	1 cut(s)	376
Eco91I	GGTNACC	1 cut(s)	191
EcoO65I	GGTNACC	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	218
EcoT14I	CCWWGG	2 cut(s)	103, 206
EcoT38I	GRGCYC	1 cut(s)	376
ErhI	CCWWGG	2 cut(s)	103, 206
FaeI	CATG	5 cut(s)	210, 274, 317, 368, 455
FatI	CATG	5 cut(s)	206, 270, 313, 364, 451
FauNDI	CATATG	1 cut(s)	53
Fnu4HI	GCNGC	2 cut(s)	398, 456
FriOI	GRGCYC	1 cut(s)	376
Fsp4HI	GCNGC	2 cut(s)	398, 456
FspBI	CTAG	2 cut(s)	8, 17
GlaI	GCGC	3 cut(s)	148, 459, 578
GluI	GCNGC	2 cut(s)	398, 456
GsaI	CCCAGC	1 cut(s)	127
HaeIII	GGCC	1 cut(s)	205
HapII	CCGG	2 cut(s)	111, 401
HgaI	GACGC	1 cut(s)	212
HhaI	GCGC	3 cut(s)	149, 460, 579
Hin1I	GRCGYC	2 cut(s)	223, 288
Hin1II	CATG	5 cut(s)	210, 274, 317, 368, 455
Hin6I	GCGC	3 cut(s)	147, 458, 577
HinP1I	GCGC	3 cut(s)	147, 458, 577
HinfI	GANTC	3 cut(s)	429, 445, 504
HpaII	CCGG	2 cut(s)	111, 401
HphI	GGTGA	1 cut(s)	185
Hpy188I	TCNGA	1 cut(s)	607
Hpy188III	TCNNGA	4 cut(s)	111, 508, 521, 633
Hpy99I	CGWCG	1 cut(s)	293
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	3 cut(s)	326, 418, 492
HpyF10VI	GCNNNNNNNGC	5 cut(s)	84, 387, 448, 457, 574
HpyF3I	CTNAG	2 cut(s)	334, 624
HpySE526I	ACGT	1 cut(s)	288
Hsp92I	GRCGYC	2 cut(s)	223, 288
Hsp92II	CATG	5 cut(s)	210, 274, 317, 368, 455
HspAI	GCGC	3 cut(s)	147, 458, 577
Kpn2I	TCCGGA	1 cut(s)	110
Kzo9I	GATC	1 cut(s)	301
LguI	GCTCTTC	1 cut(s)	380
LmnI	GCTCC	3 cut(s)	113, 173, 591
MaeI	CTAG	2 cut(s)	8, 17
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	2 cut(s)	191, 262
MalI	GATC	1 cut(s)	303
MboI	GATC	1 cut(s)	301
MboII	GAAGA	2 cut(s)	397, 629
MfeI	CAATTG	2 cut(s)	159, 306
MhlI	GDGCHC	2 cut(s)	335, 376
MlsI	TGGCCA	1 cut(s)	205
MluNI	TGGCCA	1 cut(s)	205
MlyI	GAGTC	1 cut(s)	513
MnlI	CCTC	3 cut(s)	172, 535, 613
Mox20I	TGGCCA	1 cut(s)	205
MroI	TCCGGA	1 cut(s)	110
MscI	TGGCCA	1 cut(s)	205
MseI	TTAA	1 cut(s)	152
MslI	CAYNNNNRTG	1 cut(s)	52
Msp20I	TGGCCA	1 cut(s)	205
MspA1I	CMGCKG	1 cut(s)	123
MspI	CCGG	2 cut(s)	111, 401
MspR9I	CCNGG	1 cut(s)	220
MunI	CAATTG	2 cut(s)	159, 306
MvaI	CCWGG	1 cut(s)	220
MvnI	CGCG	1 cut(s)	442
MwoI	GCNNNNNNNGC	5 cut(s)	84, 387, 448, 457, 574
NcoI	CCATGG	1 cut(s)	206
NdeI	CATATG	1 cut(s)	53
NdeII	GATC	1 cut(s)	301
NlaIII	CATG	5 cut(s)	210, 274, 317, 368, 455
NlaIV	GGNNCC	3 cut(s)	109, 169, 340
NmuCI	GTSAC	2 cut(s)	191, 262
NspI	RCATGY	1 cut(s)	455
PaeI	GCATGC	1 cut(s)	455
PciSI	GCTCTTC	1 cut(s)	380
PfeI	GAWTC	2 cut(s)	429, 445
PflMI	CCANNNNNTGG	2 cut(s)	164, 588
PkrI	GCNGC	2 cut(s)	399, 457
PleI	GAGTC	1 cut(s)	512
PpsI	GAGTC	1 cut(s)	512
Psp6I	CCWGG	1 cut(s)	218
PspEI	GGTNACC	1 cut(s)	191
PspFI	CCCAGC	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	218
PspN4I	GGNNCC	3 cut(s)	109, 169, 340
RseI	CAYNNNNRTG	1 cut(s)	52
SapI	GCTCTTC	1 cut(s)	380
SaqAI	TTAA	1 cut(s)	152
SatI	GCNGC	2 cut(s)	398, 456
Sau3AI	GATC	1 cut(s)	301
SchI	GAGTC	1 cut(s)	513
ScrFI	CCNGG	1 cut(s)	220
SduI	GDGCHC	2 cut(s)	335, 376
SetI	ASST	6 cut(s)	105, 193, 247, 291, 340, 605
SfcI	CTRYAG	1 cut(s)	282
SmiMI	CAYNNNNRTG	1 cut(s)	52
SphI	GCATGC	1 cut(s)	455
SsiI	CCGC	4 cut(s)	121, 398, 442, 455
SspMI	CTAG	2 cut(s)	8, 17
StyD4I	CCNGG	1 cut(s)	218
StyI	CCWWGG	2 cut(s)	103, 206
TaaI	ACNGT	1 cut(s)	143
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	1 cut(s)	60
TauI	GCSGC	2 cut(s)	400, 458
TfiI	GAWTC	2 cut(s)	429, 445
Tru1I	TTAA	1 cut(s)	152
Tru9I	TTAA	1 cut(s)	152
TscAI	CASTG	3 cut(s)	333, 420, 494
TseFI	GTSAC	2 cut(s)	191, 262
Tsp45I	GTSAC	2 cut(s)	191, 262
TspDTI	ATGAA	3 cut(s)	259, 302, 353
TspRI	CASTG	3 cut(s)	333, 420, 494
Van91I	CCANNNNNTGG	2 cut(s)	164, 588
XapI	RAATTY	1 cut(s)	114
XceI	RCATGY	1 cut(s)	455
XspI	CTAG	2 cut(s)	8, 17
ZraI	GACGTC	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.