Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0011204

Physical Location & Seq

Genomic Coordinates Reverse (-)

33756177 .. 33757100

Gene Structure 924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033888

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGTCGATCTTGATTCAGAACAAGCTCCTCCCAAGTTTCAAACACAATCTTCAGACAACATGTCACTCTTCAGAGCTCCACACACCTGTCCGTTGCTCCAACCCTCTCCCCGACCCCAACAAGCTCGTTACCAAACCTCCACAGCTGTTGCAGCTCGAACCCTCACCCACCCTTCTCCCTGACAATATCCAGCCAGTGCCAAGTGACGAAAGTTTACTGTCAACATGGTCTCACCGAGCGTGGGTAGCAAGTGGGTGCATCACTGTGCTCATTTCTCTAGCCAACTCCATAATAGGTGCCGCCAATTCACAAATATGGGTCAAGCCCATTTTAGCGGCATGGGTCGGGTACTTGCTGGCGGATCTCGGGTCCGGATTGTACCATTGGGCGATTGACAACTATGGCAGTGCTTCAACTCCAATATTTGGTGGCCAAATAGAGTCATTTCAAAGTCACCATAAGTCTCCATGGTCAATCACTAAGCGCCAAGTTGCTAACAATTTACATATCCCGGCTAGTGCCGTAACTTTCCTAGGACTTCCCTTAGTCCTTGCTTTTGATGAACCAATTTTTAATGGCTTTGTTGCTGTTTACTTTGGTTGCGTTATGTTTTGCCAACAATTTCATGCTTGGGCTCATGAAACAAAGAGCCGGCTACCGCCATTGGTGACAGCATTGCAAGATTTCGGCATACTGATATCTCGGTCGCAACATTCTGCGCACCACAAGCAACCTTTTAACAATAATTACTGCATAGTGAGTGGAATTTGGAATGAGTTTTTGGACAAGCATAAGGTTTTTGAGGCACTGGAAATGATCATATTTTCTAAGCTAGGGTTAAGACCTAGGTCTTGGAATGAACCCACCTCTGAGTGGACTGAAGAAGCTGAGACTACTTCTGAGGTAGTAAATGTAATAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006464 GO:0006508 GO:0006511 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009057 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009941 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016053 GO:0016491 GO:0016567 GO:0016705 GO:0016740 GO:0019538 GO:0019637 GO:0019752 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0030433 GO:0031090 GO:0031625 GO:0031967 GO:0031969 GO:0031975 GO:0032446 GO:0032787 GO:0033554 GO:0033559 GO:0034976 GO:0036211 GO:0036503 GO:0042170 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044281 GO:0044283 GO:0044389 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046471 GO:0046486 GO:0050896 GO:0051603 GO:0051716 GO:0052637 GO:0055114 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0072330 GO:0080167 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901698

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM189_B_dmain

Protein Analysis

308

Amino Acids

34.23

Weight (kDa)

6.38

Isoelectric Point (pI)

49.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipid_desat	PF10520	117 - 285	1.8e-67	Lipid desaturase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27030
fragaria_vesca	FvH4_3g22400
malus_domestica	MD03G1205300.v1.1 MD11G1221200.v1.1
prunus_persica	Prupe.4G210500_v2.0.a1 Prupe.4G210600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0039071
rosa_laevigata	RLG00000033888 RLG00000033890 RLG00000033891
rosa_multiflora	Rmu_co8409277.1_g000001 Rmu_sc0000533.1_g000033 Rmu_sc0007753.1_g000004
rosa_roxburghii	Rroxscaffold_1G00042040
rosa_rugosa	Rorug05G0176300
rosa_samantha	Rh5AG262700 Rh5BG267500 Rh5CG300200 Rh5DG273900
rosa_wichuraiana	Rw5G024560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	720
AccB1I	GGYRCC	1 cut(s)	296
AccB7I	CCANNNNNTGG	1 cut(s)	425
AccIII	TCCGGA	1 cut(s)	371
AciI	CCGC	4 cut(s)	300, 335, 359, 659
AclWI	GGATC	1 cut(s)	369
AcoI	YGGCCR	1 cut(s)	430
AcsI	RAATTY	1 cut(s)	765
AcuI	CTGAAG	3 cut(s)	35, 54, 900
AfaI	GTAC	2 cut(s)	350, 380
AfiI	CCNNNNNNNGG	3 cut(s)	241, 425, 873
AflIII	ACRYGT	1 cut(s)	59
AgsI	TTSAA	3 cut(s)	40, 414, 449
AhdI	GACNNNNNGTC	1 cut(s)	60
AjuI	GAANNNNNNNTTGG	2 cut(s)	764, 796
AluBI	AGCT	7 cut(s)	25, 76, 124, 145, 154, 832, 887
AluI	AGCT	7 cut(s)	25, 76, 124, 145, 154, 832, 887
Alw21I	GWGCWC	2 cut(s)	78, 270
Alw26I	GTCTC	3 cut(s)	234, 468, 884
AlwI	GGATC	1 cut(s)	369
Ama87I	CYCGRG	1 cut(s)	365
Aor13HI	TCCGGA	1 cut(s)	371
AoxI	GGCC	1 cut(s)	430
ApeKI	GCWGC	1 cut(s)	151
ApoI	RAATTY	1 cut(s)	765
AspA2I	CCTAGG	2 cut(s)	532, 845
AspLEI	GCGC	2 cut(s)	486, 721
AspS9I	GGNCC	1 cut(s)	369
AsuC2I	CCSGG	1 cut(s)	512
AsuHPI	GGTGA	4 cut(s)	156, 224, 446, 679
AvaI	CYCGRG	1 cut(s)	365
AvaII	GGWCC	1 cut(s)	369
AvrII	CCTAGG	2 cut(s)	532, 845
BalI	TGGCCA	1 cut(s)	432
BanI	GGYRCC	1 cut(s)	296
BanII	GRGCYC	2 cut(s)	78, 637
Bbv12I	GWGCWC	2 cut(s)	78, 270
BbvI	GCAGC	1 cut(s)	163
BceAI	ACGGC	1 cut(s)	506
BclI	TGATCA	1 cut(s)	816
BcnI	CCSGG	1 cut(s)	512
BcoDI	GTCTC	3 cut(s)	234, 468, 884
BfaI	CTAG	5 cut(s)	278, 516, 533, 833, 846
BfoI	RGCGCY	1 cut(s)	487
BisI	GCNGC	3 cut(s)	152, 300, 336
BlnI	CCTAGG	2 cut(s)	532, 845
BlsI	GCNGC	3 cut(s)	153, 301, 337
Bme1390I	CCNGG	1 cut(s)	512
Bme18I	GGWCC	1 cut(s)	369
BmeRI	GACNNNNNGTC	1 cut(s)	60
BmeT110I	CYCGRG	1 cut(s)	365
BmgT120I	GGNCC	1 cut(s)	369
BmiI	GGNNCC	2 cut(s)	298, 370
BmrFI	CCNGG	1 cut(s)	512
BmsI	GCATC	1 cut(s)	267
BoxI	GACNNNNGTC	1 cut(s)	847
BpuMI	CCSGG	1 cut(s)	512
BsaI	GGTCTC	1 cut(s)	234
BsaJI	CCNNGG	3 cut(s)	467, 532, 845
BsaWI	WCCGGW	1 cut(s)	371
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bsc4I	CCNNNNNNNGG	3 cut(s)	241, 425, 873
Bse118I	RCCGGY	1 cut(s)	651
Bse1I	ACTGG	2 cut(s)	194, 813
Bse3DI	GCAATG	1 cut(s)	674
BseAI	TCCGGA	1 cut(s)	371
BseDI	CCNNGG	3 cut(s)	467, 532, 845
BseLI	CCNNNNNNNGG	3 cut(s)	241, 425, 873
BseMI	GCAATG	1 cut(s)	674
BseMII	CTCAG	3 cut(s)	861, 879, 891
BseNI	ACTGG	2 cut(s)	194, 813
BseRI	GAGGAG	1 cut(s)	17
BseXI	GCAGC	1 cut(s)	163
Bsh1285I	CGRYCG	1 cut(s)	707
BshFI	GGCC	1 cut(s)	432
BshNI	GGYRCC	1 cut(s)	296
BsiEI	CGRYCG	1 cut(s)	707
BsiHKAI	GWGCWC	2 cut(s)	78, 270
BsiHKCI	CYCGRG	1 cut(s)	365
BsiSI	CCGG	3 cut(s)	372, 512, 652
BslI	CCNNNNNNNGG	3 cut(s)	241, 425, 873
BsmAI	GTCTC	3 cut(s)	234, 468, 884
BsnI	GGCC	1 cut(s)	432
Bso31I	GGTCTC	1 cut(s)	234
BsoBI	CYCGRG	1 cut(s)	365
Bsp1286I	GDGCHC	3 cut(s)	78, 270, 637
Bsp13I	TCCGGA	1 cut(s)	371
Bsp143I	GATC	3 cut(s)	6, 361, 816
Bsp19I	CCATGG	1 cut(s)	467
BspACI	CCGC	4 cut(s)	300, 335, 359, 659
BspANI	GGCC	1 cut(s)	432
BspCNI	CTCAG	3 cut(s)	862, 880, 892
BspEI	TCCGGA	1 cut(s)	371
BspHI	TCATGA	1 cut(s)	637
BspLI	GGNNCC	2 cut(s)	298, 370
BspPI	GGATC	1 cut(s)	369
BspT107I	GGYRCC	1 cut(s)	296
BspTNI	GGTCTC	1 cut(s)	234
BsrDI	GCAATG	1 cut(s)	674
BsrFI	RCCGGY	1 cut(s)	651
BsrI	ACTGG	2 cut(s)	194, 813
BssAI	RCCGGY	1 cut(s)	651
BssECI	CCNNGG	3 cut(s)	467, 532, 845
BssMI	GATC	3 cut(s)	6, 361, 816
BssT1I	CCWWGG	3 cut(s)	467, 532, 845
Bst4CI	ACNGT	2 cut(s)	219, 265
Bst6I	CTCTTC	1 cut(s)	73
BstC8I	GCNNGC	2 cut(s)	357, 653
BstDEI	CTNAG	6 cut(s)	480, 544, 828, 870, 888, 900
BstDSI	CCRYGG	1 cut(s)	467
BstH2I	RGCGCY	1 cut(s)	487
BstHHI	GCGC	2 cut(s)	486, 721
BstKTI	GATC	3 cut(s)	9, 364, 819
BstMAI	GTCTC	3 cut(s)	234, 468, 884
BstMBI	GATC	3 cut(s)	6, 361, 816
BstMCI	CGRYCG	1 cut(s)	707
BstMWI	GCNNNNNNNGC	3 cut(s)	151, 245, 727
BstNSI	RCATGY	1 cut(s)	63
BstPAI	GACNNNNGTC	1 cut(s)	847
BstSCI	CCNGG	1 cut(s)	510
BstV1I	GCAGC	1 cut(s)	163
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BsuRI	GGCC	1 cut(s)	432
BtgI	CCRYGG	1 cut(s)	467
BtsI	GCAGTG	1 cut(s)	412
BtsIMutI	CAGTG	4 cut(s)	201, 261, 412, 806
Cac8I	GCNNGC	2 cut(s)	357, 653
CciI	TCATGA	1 cut(s)	637
CfoI	GCGC	2 cut(s)	486, 721
Cfr10I	RCCGGY	1 cut(s)	651
Cfr13I	GGNCC	1 cut(s)	369
Csp6I	GTAC	2 cut(s)	349, 379
CspCI	CAANNNNNGTGG	2 cut(s)	129, 164
CviAII	CATG	6 cut(s)	60, 225, 339, 468, 626, 638
CviQI	GTAC	2 cut(s)	349, 379
DdeI	CTNAG	6 cut(s)	480, 544, 828, 870, 888, 900
DpnI	GATC	3 cut(s)	8, 363, 818
DpnII	GATC	3 cut(s)	6, 361, 816
DriI	GACNNNNNGTC	1 cut(s)	60
EaeI	YGGCCR	1 cut(s)	430
Eam1104I	CTCTTC	1 cut(s)	73
Eam1105I	GACNNNNNGTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	73
EciI	GGCGGA	1 cut(s)	374
Ecl136II	GAGCTC	1 cut(s)	76
Eco130I	CCWWGG	3 cut(s)	467, 532, 845
Eco24I	GRGCYC	2 cut(s)	78, 637
Eco31I	GGTCTC	1 cut(s)	234
Eco32I	GATATC	1 cut(s)	699
Eco47I	GGWCC	1 cut(s)	369
Eco53kI	GAGCTC	1 cut(s)	76
Eco57I	CTGAAG	3 cut(s)	35, 54, 900
Eco88I	CYCGRG	1 cut(s)	365
EcoICRI	GAGCTC	1 cut(s)	76
EcoRV	GATATC	1 cut(s)	699
EcoT14I	CCWWGG	3 cut(s)	467, 532, 845
EcoT38I	GRGCYC	2 cut(s)	78, 637
ErhI	CCWWGG	3 cut(s)	467, 532, 845
FaeI	CATG	6 cut(s)	63, 228, 342, 471, 629, 641
FatI	CATG	6 cut(s)	59, 224, 338, 467, 625, 637
FbaI	TGATCA	1 cut(s)	816
Fnu4HI	GCNGC	3 cut(s)	152, 300, 336
FriOI	GRGCYC	2 cut(s)	78, 637
Fsp4HI	GCNGC	3 cut(s)	152, 300, 336
FspBI	CTAG	5 cut(s)	278, 516, 533, 833, 846
FspI	TGCGCA	1 cut(s)	720
GlaI	GCGC	2 cut(s)	485, 720
GluI	GCNGC	3 cut(s)	152, 300, 336
HaeII	RGCGCY	1 cut(s)	487
HaeIII	GGCC	1 cut(s)	432
HapII	CCGG	3 cut(s)	372, 512, 652
HhaI	GCGC	2 cut(s)	486, 721
Hin1II	CATG	6 cut(s)	63, 228, 342, 471, 629, 641
Hin6I	GCGC	2 cut(s)	484, 719
HinP1I	GCGC	2 cut(s)	484, 719
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HinfI	GANTC	2 cut(s)	13, 440
HpaII	CCGG	3 cut(s)	372, 512, 652
HphI	GGTGA	4 cut(s)	156, 224, 446, 679
Hpy166II	GTNNAC	4 cut(s)	215, 222, 592, 876
Hpy188I	TCNGA	5 cut(s)	18, 54, 73, 871, 901
Hpy188III	TCNNGA	3 cut(s)	10, 372, 638
Hpy8I	GTNNAC	4 cut(s)	215, 222, 592, 876
HpyAV	CCTTC	1 cut(s)	182
HpyCH4III	ACNGT	2 cut(s)	219, 265
HpyCH4V	TGCA	4 cut(s)	151, 258, 679, 753
HpyF10VI	GCNNNNNNNGC	3 cut(s)	151, 245, 727
HpyF3I	CTNAG	6 cut(s)	480, 544, 828, 870, 888, 900
Hsp92II	CATG	6 cut(s)	63, 228, 342, 471, 629, 641
HspAI	GCGC	2 cut(s)	484, 719
Kpn2I	TCCGGA	1 cut(s)	371
KroI	GCCGGC	1 cut(s)	651
KroNI	GCCGGC	1 cut(s)	653
Ksp22I	TGATCA	1 cut(s)	816
Kzo9I	GATC	3 cut(s)	6, 361, 816
LmnI	GCTCC	3 cut(s)	30, 81, 101
LpnPI	CCDG	9 cut(s)	99, 192, 203, 207, 341, 385, 525, 665, 794
Lsp1109I	GCAGC	1 cut(s)	163
LweI	GCATC	1 cut(s)	267
MaeI	CTAG	5 cut(s)	278, 516, 533, 833, 846
MaeIII	GTNAC	6 cut(s)	62, 127, 203, 452, 523, 667
MalI	GATC	3 cut(s)	8, 363, 818
MboI	GATC	3 cut(s)	6, 361, 816
MboII	GAAGA	3 cut(s)	41, 60, 893
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	3 cut(s)	78, 270, 637
MlsI	TGGCCA	1 cut(s)	432
MluCI	AATT	7 cut(s)	304, 499, 567, 620, 745, 765, 919
MluNI	TGGCCA	1 cut(s)	432
MlyI	GAGTC	1 cut(s)	449
MmeI	TCCRAC	1 cut(s)	123
MnlI	CCTC	7 cut(s)	38, 114, 147, 172, 796, 877, 895
Mox20I	TGGCCA	1 cut(s)	432
MroI	TCCGGA	1 cut(s)	371
MroNI	GCCGGC	1 cut(s)	651
MscI	TGGCCA	1 cut(s)	432
MseI	TTAA	3 cut(s)	573, 738, 839
MslI	CAYNNNNRTG	2 cut(s)	263, 313
Msp20I	TGGCCA	1 cut(s)	432
MspA1I	CMGCKG	1 cut(s)	145
MspI	CCGG	3 cut(s)	372, 512, 652
MspR9I	CCNGG	1 cut(s)	512
MwoI	GCNNNNNNNGC	3 cut(s)	151, 245, 727
NaeI	GCCGGC	1 cut(s)	653
NciI	CCSGG	1 cut(s)	512
NcoI	CCATGG	1 cut(s)	467
NdeII	GATC	3 cut(s)	6, 361, 816
NgoMIV	GCCGGC	1 cut(s)	651
NlaIII	CATG	6 cut(s)	63, 228, 342, 471, 629, 641
NlaIV	GGNNCC	2 cut(s)	298, 370
NmuCI	GTSAC	4 cut(s)	62, 203, 452, 667
NsbI	TGCGCA	1 cut(s)	720
NspI	RCATGY	1 cut(s)	63
PagI	TCATGA	1 cut(s)	637
PciI	ACATGT	1 cut(s)	59
PdiI	GCCGGC	1 cut(s)	653
PfeI	GAWTC	1 cut(s)	13
PflMI	CCANNNNNTGG	1 cut(s)	425
PkrI	GCNGC	3 cut(s)	153, 301, 337
PleI	GAGTC	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	448
PscI	ACATGT	1 cut(s)	59
PshAI	GACNNNNGTC	1 cut(s)	847
Psp124BI	GAGCTC	1 cut(s)	78
PspN4I	GGNNCC	2 cut(s)	298, 370
PspPI	GGNCC	1 cut(s)	369
PsuI	RGATCY	1 cut(s)	361
PvuII	CAGCTG	1 cut(s)	145
RsaI	GTAC	2 cut(s)	350, 380
RsaNI	GTAC	2 cut(s)	349, 379
RseI	CAYNNNNRTG	2 cut(s)	263, 313
SacI	GAGCTC	1 cut(s)	78
SaqAI	TTAA	3 cut(s)	573, 738, 839
SatI	GCNGC	3 cut(s)	152, 300, 336
Sau3AI	GATC	3 cut(s)	6, 361, 816
Sau96I	GGNCC	1 cut(s)	369
SchI	GAGTC	1 cut(s)	449
ScrFI	CCNGG	1 cut(s)	512
SduI	GDGCHC	3 cut(s)	78, 270, 637
SfaNI	GCATC	1 cut(s)	267
SinI	GGWCC	1 cut(s)	369
SmiMI	CAYNNNNRTG	2 cut(s)	263, 313
Sse9I	AATT	7 cut(s)	304, 499, 567, 620, 745, 765, 919
SsiI	CCGC	4 cut(s)	300, 335, 359, 659
SspI	AATATT	1 cut(s)	423
SspMI	CTAG	5 cut(s)	278, 516, 533, 833, 846
SstI	GAGCTC	1 cut(s)	78
StyD4I	CCNGG	1 cut(s)	510
StyI	CCWWGG	3 cut(s)	467, 532, 845
TaaI	ACNGT	2 cut(s)	219, 265
TaqI	TCGA	2 cut(s)	5, 156
TaqII	GACCGA	1 cut(s)	693
TasI	AATT	7 cut(s)	304, 499, 567, 620, 745, 765, 919
TauI	GCSGC	2 cut(s)	302, 338
TfiI	GAWTC	1 cut(s)	13
Tru1I	TTAA	3 cut(s)	573, 738, 839
Tru9I	TTAA	3 cut(s)	573, 738, 839
TscAI	CASTG	4 cut(s)	201, 268, 412, 813
TseFI	GTSAC	4 cut(s)	62, 203, 452, 667
TseI	GCWGC	1 cut(s)	151
Tsp45I	GTSAC	4 cut(s)	62, 203, 452, 667
TspDTI	ATGAA	4 cut(s)	576, 614, 654, 873
TspGWI	ACGGA	1 cut(s)	80
TspRI	CASTG	4 cut(s)	201, 268, 412, 813
Van91I	CCANNNNNTGG	1 cut(s)	425
VpaK11BI	GGWCC	1 cut(s)	369
XapI	RAATTY	1 cut(s)	765
XceI	RCATGY	1 cut(s)	63
XmaJI	CCTAGG	2 cut(s)	532, 845
XspI	CTAG	5 cut(s)	278, 516, 533, 833, 846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.