Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014029

Physical Location & Seq

Genomic Coordinates Reverse (-)

13818825 .. 13819971

Gene Structure 1147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G27670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCTTCTACACTCTCATTTGCTGCATCGGCTCTATGTTCACCTCTTGCTCCATCTCCTTCTGTCTCATCGAAGTCCGCTACACCGTTCTCGGTTTCGTTCCCACGGAAGATCCCTAGCCGGATCAGGGCTCAAGACCAGAGAGAAAACTCCATTGATGTTGTTCAGCAAGGACAACAAAAAGGGAACCAAGGATCAAGTGTCGAAAAAAGACCTCAACAACGCTTAACCATGGACGTCTCTCCTTTCGGATTGTTGGATCCTTTGTCACCAATGAGGACGATGCGACAAATGTTAGATACTATGGACAGGATGTTCGAGGACACTATGCCTGTCTCAGGAAGAAACAGAGGAGGAAGTGGAGTGTCAGAGATTCGTGCACCGTGGGACATCAAAGAGGAAGAACACGAGATCAAGATGCGTTTCGACATGCCTGGTCTCTCTAAAGAAGACGTCAAAATCTCTGTAGAAGATAACGTACTTGTGATCAAAGGAGAGCAGAAGAAGGAAGACAGTGATGATTCTTGGTCTGGAAGAAGCGTTAGCTCATATGGAACACGACTTCAGCTCCCAGACAACTGTGAGAAAGACAAGATCAAAGCTGAGCTCAAGAACGGAGTCCTCTTTATCACTATCCCTAAGACCAAAGTCGAACGCAAAGTCATCGATGTCCAGATTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006950 GO:0006979 GO:0006996 GO:0008150 GO:0009266 GO:0009295 GO:0009314 GO:0009408 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0042221 GO:0042493 GO:0042542 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0101031 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

227

Amino Acids

25.34

Weight (kDa)

8.49

Isoelectric Point (pI)

46.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP20	PF00011	130 - 227	2.1e-31	Hsp20/alpha crystallin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27670
fragaria_vesca	FvH4_6g02120 FvH4_7g32800
malus_domestica	MD01G1227600.v1.1 MD07G1298000.v1.1
prunus_persica	Prupe.2G317700_v2.0.a1
pyrus_communis	pycom07g27040
rosa_chinensis	RchiOBHm_Chr1g0382761
rosa_laevigata	RLG00000026163
rosa_multiflora	Rmu_co8395491.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277930
rosa_rugosa	Rorug01G0435600
rosa_samantha	Rh1AG460800 Rh1BG417600 Rh1CG431200 Rh1DG449800
rosa_wichuraiana	Rw1G041080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	240, 456
AciI	CCGC	1 cut(s)	78
AclWI	GGATC	5 cut(s)	106, 131, 202, 254, 267
AcuI	CTGAAG	1 cut(s)	548
AcyI	GRCGYC	2 cut(s)	237, 453
AfaI	GTAC	1 cut(s)	480
AfiI	CCNNNNNNNGG	2 cut(s)	127, 338
AjnI	CCWGG	1 cut(s)	433
AloI	GAACNNNNNNTCC	2 cut(s)	299, 331
AluBI	AGCT	4 cut(s)	546, 568, 602, 607
AluI	AGCT	4 cut(s)	546, 568, 602, 607
Alw21I	GWGCWC	2 cut(s)	382, 609
Alw26I	GTCTC	4 cut(s)	70, 244, 340, 443
Alw44I	GTGCAC	1 cut(s)	378
AlwI	GGATC	5 cut(s)	106, 131, 202, 254, 267
ApaLI	GTGCAC	1 cut(s)	378
ApeKI	GCWGC	1 cut(s)	23
ArsI	GACNNNNNNTTYG	4 cut(s)	299, 331, 645, 677
AsuHPI	GGTGA	2 cut(s)	33, 261
BaeGI	GKGCMC	1 cut(s)	382
BamHI	GGATCC	1 cut(s)	259
BanII	GRGCYC	2 cut(s)	133, 609
BarI	GAAGNNNNNNTAC	2 cut(s)	462, 494
BauI	CACGAG	1 cut(s)	407
BbsI	GAAGAC	2 cut(s)	456, 516
Bbv12I	GWGCWC	2 cut(s)	382, 609
BbvI	GCAGC	1 cut(s)	10
BccI	CCATC	1 cut(s)	61
BcgI	CGANNNNNNTGC	2 cut(s)	646, 680
BciT130I	CCWGG	1 cut(s)	435
BclI	TGATCA	1 cut(s)	486
BcoDI	GTCTC	4 cut(s)	70, 244, 340, 443
BfaI	CTAG	1 cut(s)	117
BfmI	CTRYAG	1 cut(s)	465
BisI	GCNGC	1 cut(s)	24
BlpI	GCTNAGC	1 cut(s)	603
BlsI	GCNGC	1 cut(s)	25
Bme1390I	CCNGG	1 cut(s)	435
BmiI	GGNNCC	2 cut(s)	188, 261
BmrFI	CCNGG	1 cut(s)	435
BmsI	GCATC	3 cut(s)	35, 273, 408
BoxI	GACNNNNGTC	1 cut(s)	647
BpiI	GAAGAC	2 cut(s)	456, 516
Bpu1102I	GCTNAGC	1 cut(s)	603
BpuEI	CTTGAG	2 cut(s)	117, 593
Bsa29I	ATCGAT	1 cut(s)	666
BsaHI	GRCGYC	2 cut(s)	237, 453
BsaI	GGTCTC	1 cut(s)	443
BsaJI	CCNNGG	4 cut(s)	104, 190, 231, 383
BsaXI	ACNNNNNCTCC	2 cut(s)	552, 582
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 338
BseBI	CCWGG	1 cut(s)	435
BseCI	ATCGAT	1 cut(s)	666
BseDI	CCNNGG	4 cut(s)	104, 190, 231, 383
BseGI	GGATG	1 cut(s)	318
BseLI	CCNNNNNNNGG	2 cut(s)	127, 338
BseMII	CTCAG	2 cut(s)	351, 594
BseRI	GAGGAG	1 cut(s)	366
BseSI	GKGCMC	1 cut(s)	382
BseXI	GCAGC	1 cut(s)	10
BshVI	ATCGAT	1 cut(s)	666
BsiHKAI	GWGCWC	2 cut(s)	382, 609
BsiSI	CCGG	1 cut(s)	121
BslFI	GGGAC	1 cut(s)	401
BslI	CCNNNNNNNGG	2 cut(s)	127, 338
BsmAI	GTCTC	4 cut(s)	70, 244, 340, 443
BsmBI	CGTCTC	1 cut(s)	244
BsmFI	GGGAC	1 cut(s)	401
Bso31I	GGTCTC	1 cut(s)	443
Bsp1286I	GDGCHC	3 cut(s)	133, 382, 609
Bsp143I	GATC	7 cut(s)	111, 123, 194, 259, 411, 486, 594
Bsp1720I	GCTNAGC	1 cut(s)	603
Bsp19I	CCATGG	1 cut(s)	231
BspACI	CCGC	1 cut(s)	78
BspCNI	CTCAG	2 cut(s)	350, 595
BspDI	ATCGAT	1 cut(s)	666
BspLI	GGNNCC	2 cut(s)	188, 261
BspPI	GGATC	5 cut(s)	106, 131, 202, 254, 267
BspTNI	GGTCTC	1 cut(s)	443
BssECI	CCNNGG	4 cut(s)	104, 190, 231, 383
BssMI	GATC	7 cut(s)	111, 123, 194, 259, 411, 486, 594
BssNI	GRCGYC	2 cut(s)	237, 453
BssSI	CACGAG	1 cut(s)	407
BssT1I	CCWWGG	2 cut(s)	190, 231
Bst2BI	CACGAG	1 cut(s)	407
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	4 cut(s)	87, 384, 515, 581
BstACI	GRCGYC	2 cut(s)	237, 453
BstDEI	CTNAG	3 cut(s)	337, 603, 639
BstDSI	CCRYGG	3 cut(s)	104, 231, 383
BstENI	CCTNNNNNAGG	1 cut(s)	336
BstF5I	GGATG	1 cut(s)	318
BstKTI	GATC	7 cut(s)	114, 126, 197, 262, 414, 489, 597
BstMAI	GTCTC	4 cut(s)	70, 244, 340, 443
BstMBI	GATC	7 cut(s)	111, 123, 194, 259, 411, 486, 594
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstNI	CCWGG	1 cut(s)	435
BstNSI	RCATGY	1 cut(s)	433
BstPAI	GACNNNNGTC	1 cut(s)	647
BstSCI	CCNGG	1 cut(s)	433
BstSFI	CTRYAG	1 cut(s)	465
BstSLI	GKGCMC	1 cut(s)	382
BstV1I	GCAGC	1 cut(s)	10
BstV2I	GAAGAC	2 cut(s)	456, 516
BstX2I	RGATCY	2 cut(s)	111, 259
BstYI	RGATCY	2 cut(s)	111, 259
Bsu15I	ATCGAT	1 cut(s)	666
BsuTUI	ATCGAT	1 cut(s)	666
BtgI	CCRYGG	3 cut(s)	104, 231, 383
BtsCI	GGATG	1 cut(s)	318
BtsIMutI	CAGTG	1 cut(s)	520
ClaI	ATCGAT	1 cut(s)	666
Csp6I	GTAC	1 cut(s)	479
CviAII	CATG	2 cut(s)	232, 430
CviJI	RGCY	8 cut(s)	5, 32, 120, 131, 546, 568, 602, 607
CviKI_1	RGCY	8 cut(s)	5, 32, 120, 131, 546, 568, 602, 607
CviQI	GTAC	1 cut(s)	479
DdeI	CTNAG	3 cut(s)	337, 603, 639
DpnI	GATC	7 cut(s)	113, 125, 196, 261, 413, 488, 596
DpnII	GATC	7 cut(s)	111, 123, 194, 259, 411, 486, 594
Ecl136II	GAGCTC	1 cut(s)	607
Eco130I	CCWWGG	2 cut(s)	190, 231
Eco24I	GRGCYC	2 cut(s)	133, 609
Eco31I	GGTCTC	1 cut(s)	443
Eco53kI	GAGCTC	1 cut(s)	607
Eco57I	CTGAAG	1 cut(s)	548
EcoICRI	GAGCTC	1 cut(s)	607
EcoNI	CCTNNNNNAGG	1 cut(s)	336
EcoRII	CCWGG	1 cut(s)	433
EcoT14I	CCWWGG	2 cut(s)	190, 231
EcoT38I	GRGCYC	2 cut(s)	133, 609
ErhI	CCWWGG	2 cut(s)	190, 231
Esp3I	CGTCTC	1 cut(s)	244
FaeI	CATG	2 cut(s)	235, 433
FaiI	YATR	7 cut(s)	37, 233, 305, 329, 431, 550, 552
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	2 cut(s)	231, 429
FauNDI	CATATG	1 cut(s)	550
FbaI	TGATCA	1 cut(s)	486
Fnu4HI	GCNGC	1 cut(s)	24
FokI	GGATG	1 cut(s)	325
FriOI	GRGCYC	2 cut(s)	133, 609
Fsp4HI	GCNGC	1 cut(s)	24
FspBI	CTAG	1 cut(s)	117
GluI	GCNGC	1 cut(s)	24
HapII	CCGG	1 cut(s)	121
Hin1I	GRCGYC	2 cut(s)	237, 453
Hin1II	CATG	2 cut(s)	235, 433
HinfI	GANTC	4 cut(s)	373, 521, 618, 676
HpaII	CCGG	1 cut(s)	121
HphI	GGTGA	2 cut(s)	33, 261
Hpy166II	GTNNAC	2 cut(s)	41, 380
Hpy188I	TCNGA	2 cut(s)	251, 370
Hpy188III	TCNNGA	6 cut(s)	134, 339, 415, 531, 610, 673
Hpy8I	GTNNAC	2 cut(s)	41, 380
HpyAV	CCTTC	2 cut(s)	69, 499
HpyCH4III	ACNGT	4 cut(s)	87, 384, 515, 581
HpyCH4IV	ACGT	3 cut(s)	237, 453, 477
HpyCH4V	TGCA	2 cut(s)	26, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	3 cut(s)	337, 603, 639
HpySE526I	ACGT	3 cut(s)	237, 453, 477
Hsp92I	GRCGYC	2 cut(s)	237, 453
Hsp92II	CATG	2 cut(s)	235, 433
Ksp22I	TGATCA	1 cut(s)	486
Kzo9I	GATC	7 cut(s)	111, 123, 194, 259, 411, 486, 594
LmnI	GCTCC	2 cut(s)	55, 573
Lsp1109I	GCAGC	1 cut(s)	10
LweI	GCATC	3 cut(s)	35, 273, 408
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	3 cut(s)	237, 453, 477
MaeIII	GTNAC	1 cut(s)	267
MalI	GATC	7 cut(s)	113, 125, 196, 261, 413, 488, 596
MboI	GATC	7 cut(s)	111, 123, 194, 259, 411, 486, 594
MboII	GAAGA	8 cut(s)	121, 354, 413, 461, 482, 514, 521, 546
MflI	RGATCY	2 cut(s)	111, 259
MhlI	GDGCHC	3 cut(s)	133, 382, 609
MlyI	GAGTC	1 cut(s)	627
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	8 cut(s)	54, 225, 270, 313, 344, 347, 391, 632
MseI	TTAA	1 cut(s)	227
MspI	CCGG	1 cut(s)	121
MspR9I	CCNGG	1 cut(s)	435
MvaI	CCWGG	1 cut(s)	435
MwoI	GCNNNNNNNGC	1 cut(s)	29
NcoI	CCATGG	1 cut(s)	231
NdeI	CATATG	1 cut(s)	550
NdeII	GATC	7 cut(s)	111, 123, 194, 259, 411, 486, 594
NlaIII	CATG	2 cut(s)	235, 433
NlaIV	GGNNCC	2 cut(s)	188, 261
NmuCI	GTSAC	1 cut(s)	267
NspI	RCATGY	1 cut(s)	433
PfeI	GAWTC	3 cut(s)	373, 521, 676
PkrI	GCNGC	1 cut(s)	25
PleI	GAGTC	1 cut(s)	626
PpsI	GAGTC	1 cut(s)	626
PshAI	GACNNNNGTC	1 cut(s)	647
Psp124BI	GAGCTC	1 cut(s)	609
Psp6I	CCWGG	1 cut(s)	433
PspGI	CCWGG	1 cut(s)	433
PspN4I	GGNNCC	2 cut(s)	188, 261
PsuI	RGATCY	2 cut(s)	111, 259
RsaI	GTAC	1 cut(s)	480
RsaNI	GTAC	1 cut(s)	479
SacI	GAGCTC	1 cut(s)	609
SaqAI	TTAA	1 cut(s)	227
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	7 cut(s)	111, 123, 194, 259, 411, 486, 594
SchI	GAGTC	1 cut(s)	627
ScrFI	CCNGG	1 cut(s)	435
SduI	GDGCHC	3 cut(s)	133, 382, 609
SetI	ASST	9 cut(s)	46, 217, 240, 456, 480, 548, 570, 604, 609
SfaNI	GCATC	3 cut(s)	35, 273, 408
SfcI	CTRYAG	1 cut(s)	465
SmlI	CTYRAG	2 cut(s)	132, 608
SmoI	CTYRAG	2 cut(s)	132, 608
SsiI	CCGC	1 cut(s)	78
SspMI	CTAG	1 cut(s)	117
SstI	GAGCTC	1 cut(s)	609
StyD4I	CCNGG	1 cut(s)	433
StyI	CCWWGG	2 cut(s)	190, 231
TaaI	ACNGT	4 cut(s)	87, 384, 515, 581
TaiI	ACGT	3 cut(s)	240, 456, 480
TaqI	TCGA	6 cut(s)	71, 204, 318, 426, 651, 666
TfiI	GAWTC	3 cut(s)	373, 521, 676
Tru1I	TTAA	1 cut(s)	227
Tru9I	TTAA	1 cut(s)	227
TscAI	CASTG	1 cut(s)	520
TseFI	GTSAC	1 cut(s)	267
TseI	GCWGC	1 cut(s)	23
Tsp45I	GTSAC	1 cut(s)	267
TspGWI	ACGGA	2 cut(s)	121, 630
TspRI	CASTG	1 cut(s)	520
VneI	GTGCAC	1 cut(s)	378
XagI	CCTNNNNNAGG	1 cut(s)	336
XceI	RCATGY	1 cut(s)	433
XspI	CTAG	1 cut(s)	117
ZraI	GACGTC	2 cut(s)	238, 454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.