Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0014029

Physical Location & Seq

Genomic Coordinates Forward (+)

23506487 .. 23507781

Gene Structure 1295 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g32800.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCGTCAACATTGGCCTTGTCATCACGATCACCTTTCCTAGCAAGCAAAGCATTGGCTTCAGCTAAACCGAATGGTATTTCACGCTCAGCCAGCTTCCCTTCACCACCACGTAGGCTGCCGGCGCTGAGAGCTCAGGCCGGTGGAGATGGCAGTGTGGACGTGGCAGTGAATCAGGGTAGTAATAACCATGGGACTCAAATGGAGAAGAGGCCTAGTGCTAGAAGGTTGGCTATGGATGTTTCACCTTTTGGTCTTTTAGATCCCATGTCACCAATGCGGACTATGCGCCAGATGCTGGACACAATGGACCGTATTTTTGAAGACACTATGACACTCCCCGGCACAAGAAGCCGATCAGGAGGTGAGATTCGTGCGCCTTGGGACATCAAAGACGATGAGAATGAGATCAAAATGCGGTTCGACATGCCAGGACTCTCTAAAGAGGATGTCAAGGTCTCTATTGAGGATGATGTGCTTGTTATAAAGGGTGAGCAAAACAAGGAAGAGAACAACGATGATGCATGGTCTAGCAAGAGCTTCAGTTCCTACAACACACGCCTTCAGCTCCCGGATAACTGTGACAAGAGCAAAGTGAACGCAGAGCTCAAGAATGGTGTTCTCTACATTTCCATTCCTAAGACCGAAGTGGAGCGCAAGGTCGTTGATGTAGAAATCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006950 GO:0006979 GO:0006996 GO:0008150 GO:0009266 GO:0009295 GO:0009314 GO:0009408 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0042221 GO:0042493 GO:0042542 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0101031 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

228

Amino Acids

25.07

Weight (kDa)

6.64

Isoelectric Point (pI)

55.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP20	PF00011	129 - 226	5.8e-29	Hsp20/alpha crystallin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27670
fragaria_vesca	FvH4_6g02120 FvH4_7g32800
malus_domestica	MD01G1227600.v1.1 MD07G1298000.v1.1
prunus_persica	Prupe.2G317700_v2.0.a1
pyrus_communis	pycom07g27040
rosa_chinensis	RchiOBHm_Chr1g0382761
rosa_laevigata	RLG00000026163
rosa_multiflora	Rmu_co8395491.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277930
rosa_rugosa	Rorug01G0435600
rosa_samantha	Rh1AG460800 Rh1BG417600 Rh1CG431200 Rh1DG449800
rosa_wichuraiana	Rw1G041080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	485
AccB7I	CCANNNNNTGG	1 cut(s)	298
AciI	CCGC	2 cut(s)	280, 418
AclWI	GGATC	1 cut(s)	257
AcuI	CTGAAG	3 cut(s)	45, 526, 548
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	298
AgsI	TTSAA	1 cut(s)	323
AjiI	CACGTC	1 cut(s)	163
AjnI	CCWGG	1 cut(s)	430
AluBI	AGCT	6 cut(s)	65, 96, 134, 540, 568, 607
AluI	AGCT	6 cut(s)	65, 96, 134, 540, 568, 607
Alw21I	GWGCWC	2 cut(s)	136, 609
Alw26I	GTCTC	1 cut(s)	463
AlwI	GGATC	1 cut(s)	257
AlwNI	CAGNNNCTG	1 cut(s)	298
AoxI	GGCC	3 cut(s)	15, 138, 212
ApeKI	GCWGC	1 cut(s)	118
ArsI	GACNNNNNNTTYG	2 cut(s)	302, 334
AspLEI	GCGC	4 cut(s)	127, 291, 379, 657
AspS9I	GGNCC	1 cut(s)	310
AsuC2I	CCSGG	2 cut(s)	342, 572
AsuHPI	GGTGA	6 cut(s)	24, 96, 237, 264, 377, 503
AvaII	GGWCC	1 cut(s)	310
BanII	GRGCYC	2 cut(s)	136, 609
BbsI	GAAGAC	1 cut(s)	330
Bbv12I	GWGCWC	2 cut(s)	136, 609
BbvI	GCAGC	1 cut(s)	105
BccI	CCATC	1 cut(s)	143
BciT130I	CCWGG	1 cut(s)	432
BcnI	CCSGG	2 cut(s)	342, 572
BcoDI	GTCTC	1 cut(s)	463
BfaI	CTAG	4 cut(s)	41, 216, 222, 531
BfoI	RGCGCY	1 cut(s)	128
BisI	GCNGC	1 cut(s)	119
BlpI	GCTNAGC	1 cut(s)	88
BlsI	GCNGC	1 cut(s)	120
Bme1390I	CCNGG	3 cut(s)	342, 432, 572
Bme18I	GGWCC	1 cut(s)	310
BmgBI	CACGTC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	310
BmrFI	CCNGG	3 cut(s)	342, 432, 572
BmsI	GCATC	2 cut(s)	285, 511
BpiI	GAAGAC	1 cut(s)	330
Bpu10I	CCTNAGC	1 cut(s)	135
Bpu1102I	GCTNAGC	1 cut(s)	88
BpuEI	CTTGAG	1 cut(s)	593
BpuMI	CCSGG	2 cut(s)	342, 572
BsaAI	YACGTR	1 cut(s)	113
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	463
BsaJI	CCNNGG	3 cut(s)	190, 340, 380
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse118I	RCCGGY	2 cut(s)	121, 140
BseBI	CCWGG	1 cut(s)	432
BseDI	CCNNGG	3 cut(s)	190, 340, 380
BseGI	GGATG	3 cut(s)	244, 454, 475
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseMII	CTCAG	3 cut(s)	102, 119, 149
BseXI	GCAGC	1 cut(s)	105
BshFI	GGCC	3 cut(s)	17, 140, 214
BsiHKAI	GWGCWC	2 cut(s)	136, 609
BsiSI	CCGG	4 cut(s)	122, 141, 342, 572
BslFI	GGGAC	2 cut(s)	208, 398
BslI	CCNNNNNNNGG	1 cut(s)	298
BsmAI	GTCTC	1 cut(s)	463
BsmFI	GGGAC	2 cut(s)	208, 398
BsnI	GGCC	3 cut(s)	17, 140, 214
Bso31I	GGTCTC	1 cut(s)	463
Bsp1286I	GDGCHC	2 cut(s)	136, 609
Bsp143I	GATC	4 cut(s)	29, 262, 356, 408
Bsp1720I	GCTNAGC	1 cut(s)	88
Bsp19I	CCATGG	1 cut(s)	190
BspACI	CCGC	2 cut(s)	280, 418
BspANI	GGCC	3 cut(s)	17, 140, 214
BspCNI	CTCAG	3 cut(s)	101, 120, 148
BspPI	GGATC	1 cut(s)	257
BspTNI	GGTCTC	1 cut(s)	463
BsrFI	RCCGGY	2 cut(s)	121, 140
BssAI	RCCGGY	2 cut(s)	121, 140
BssECI	CCNNGG	3 cut(s)	190, 340, 380
BssMI	GATC	4 cut(s)	29, 262, 356, 408
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	190, 380
Bst2UI	CCWGG	1 cut(s)	432
Bst4CI	ACNGT	2 cut(s)	314, 581
Bst6I	CTCTTC	2 cut(s)	203, 501
BstACI	GRCGYC	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	113
BstC8I	GCNNGC	3 cut(s)	46, 94, 123
BstDEI	CTNAG	4 cut(s)	88, 128, 135, 639
BstDSI	CCRYGG	1 cut(s)	190
BstF5I	GGATG	3 cut(s)	244, 454, 475
BstH2I	RGCGCY	1 cut(s)	128
BstHHI	GCGC	4 cut(s)	127, 291, 379, 657
BstKTI	GATC	4 cut(s)	32, 265, 359, 411
BstMAI	GTCTC	1 cut(s)	463
BstMBI	GATC	4 cut(s)	29, 262, 356, 408
BstMWI	GCNNNNNNNGC	7 cut(s)	50, 93, 124, 131, 286, 295, 351
BstNI	CCWGG	1 cut(s)	432
BstNSI	RCATGY	1 cut(s)	430
BstSCI	CCNGG	3 cut(s)	340, 430, 570
BstV1I	GCAGC	1 cut(s)	105
BstV2I	GAAGAC	1 cut(s)	330
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
BsuRI	GGCC	3 cut(s)	17, 140, 214
BtgI	CCRYGG	1 cut(s)	190
BtrI	CACGTC	1 cut(s)	163
BtsCI	GGATG	3 cut(s)	244, 454, 475
BtsI	GCAGTG	2 cut(s)	160, 174
BtsIMutI	CAGTG	2 cut(s)	160, 174
Cac8I	GCNNGC	3 cut(s)	46, 94, 123
CaiI	CAGNNNCTG	1 cut(s)	298
CfoI	GCGC	4 cut(s)	127, 291, 379, 657
Cfr10I	RCCGGY	2 cut(s)	121, 140
Cfr13I	GGNCC	1 cut(s)	310
CviAII	CATG	4 cut(s)	191, 268, 427, 525
DdeI	CTNAG	4 cut(s)	88, 128, 135, 639
DpnI	GATC	4 cut(s)	31, 264, 358, 410
DpnII	GATC	4 cut(s)	29, 262, 356, 408
Eam1104I	CTCTTC	2 cut(s)	203, 501
EarI	CTCTTC	2 cut(s)	203, 501
Ecl136II	GAGCTC	2 cut(s)	134, 607
Eco130I	CCWWGG	2 cut(s)	190, 380
Eco147I	AGGCCT	1 cut(s)	214
Eco24I	GRGCYC	2 cut(s)	136, 609
Eco31I	GGTCTC	1 cut(s)	463
Eco47I	GGWCC	1 cut(s)	310
Eco53kI	GAGCTC	2 cut(s)	134, 607
Eco57I	CTGAAG	3 cut(s)	45, 526, 548
EcoICRI	GAGCTC	2 cut(s)	134, 607
EcoRII	CCWGG	1 cut(s)	430
EcoT14I	CCWWGG	2 cut(s)	190, 380
EcoT22I	ATGCAT	1 cut(s)	526
EcoT38I	GRGCYC	2 cut(s)	136, 609
ErhI	CCWWGG	2 cut(s)	190, 380
FaeI	CATG	4 cut(s)	194, 271, 430, 528
FaiI	YATR	8 cut(s)	192, 236, 269, 287, 332, 428, 485, 526
FaqI	GGGAC	2 cut(s)	208, 398
FatI	CATG	4 cut(s)	190, 267, 426, 524
Fnu4HI	GCNGC	1 cut(s)	119
FokI	GGATG	3 cut(s)	251, 461, 482
FriOI	GRGCYC	2 cut(s)	136, 609
Fsp4HI	GCNGC	1 cut(s)	119
FspBI	CTAG	4 cut(s)	41, 216, 222, 531
GlaI	GCGC	4 cut(s)	126, 290, 378, 656
GluI	GCNGC	1 cut(s)	119
HaeII	RGCGCY	1 cut(s)	128
HaeIII	GGCC	3 cut(s)	17, 140, 214
HapII	CCGG	4 cut(s)	122, 141, 342, 572
HhaI	GCGC	4 cut(s)	127, 291, 379, 657
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	194, 271, 430, 528
Hin6I	GCGC	4 cut(s)	125, 289, 377, 655
HinP1I	GCGC	4 cut(s)	125, 289, 377, 655
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HinfI	GANTC	4 cut(s)	172, 196, 370, 435
HpaII	CCGG	4 cut(s)	122, 141, 342, 572
HphI	GGTGA	6 cut(s)	24, 96, 237, 264, 377, 503
Hpy166II	GTNNAC	3 cut(s)	9, 160, 598
Hpy188III	TCNNGA	3 cut(s)	27, 360, 610
Hpy8I	GTNNAC	3 cut(s)	9, 160, 598
HpyAV	CCTTC	3 cut(s)	111, 219, 572
HpyCH4III	ACNGT	2 cut(s)	314, 581
HpyCH4IV	ACGT	2 cut(s)	112, 162
HpyCH4V	TGCA	1 cut(s)	524
HpyF10VI	GCNNNNNNNGC	7 cut(s)	50, 93, 124, 131, 286, 295, 351
HpyF3I	CTNAG	4 cut(s)	88, 128, 135, 639
HpySE526I	ACGT	2 cut(s)	112, 162
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	194, 271, 430, 528
HspAI	GCGC	4 cut(s)	125, 289, 377, 655
KroI	GCCGGC	1 cut(s)	121
KroNI	GCCGGC	1 cut(s)	123
Kzo9I	GATC	4 cut(s)	29, 262, 356, 408
LmnI	GCTCC	2 cut(s)	573, 652
Lsp1109I	GCAGC	1 cut(s)	105
LweI	GCATC	2 cut(s)	285, 511
MaeI	CTAG	4 cut(s)	41, 216, 222, 531
MaeII	ACGT	2 cut(s)	112, 162
MaeIII	GTNAC	2 cut(s)	270, 581
MalI	GATC	4 cut(s)	31, 264, 358, 410
MboI	GATC	4 cut(s)	29, 262, 356, 408
MboII	GAAGA	3 cut(s)	220, 335, 518
MflI	RGATCY	1 cut(s)	262
MhlI	GDGCHC	2 cut(s)	136, 609
MlyI	GAGTC	2 cut(s)	190, 429
MnlI	CCTC	4 cut(s)	204, 356, 439, 460
Mph1103I	ATGCAT	1 cut(s)	526
MroNI	GCCGGC	1 cut(s)	121
MspI	CCGG	4 cut(s)	122, 141, 342, 572
MspR9I	CCNGG	3 cut(s)	342, 432, 572
MvaI	CCWGG	1 cut(s)	432
MwoI	GCNNNNNNNGC	7 cut(s)	50, 93, 124, 131, 286, 295, 351
NaeI	GCCGGC	1 cut(s)	123
NciI	CCSGG	2 cut(s)	342, 572
NcoI	CCATGG	1 cut(s)	190
NdeII	GATC	4 cut(s)	29, 262, 356, 408
NgoMIV	GCCGGC	1 cut(s)	121
NlaIII	CATG	4 cut(s)	194, 271, 430, 528
NmuCI	GTSAC	2 cut(s)	270, 581
NsiI	ATGCAT	1 cut(s)	526
NspI	RCATGY	1 cut(s)	430
PceI	AGGCCT	1 cut(s)	214
PdiI	GCCGGC	1 cut(s)	123
PfeI	GAWTC	2 cut(s)	172, 370
PflMI	CCANNNNNTGG	1 cut(s)	298
PfoI	TCCNGGA	1 cut(s)	570
PkrI	GCNGC	1 cut(s)	120
PleI	GAGTC	2 cut(s)	190, 429
PpsI	GAGTC	2 cut(s)	190, 429
Ppu21I	YACGTR	1 cut(s)	113
PsiI	TTATAA	1 cut(s)	485
Psp124BI	GAGCTC	2 cut(s)	136, 609
Psp6I	CCWGG	1 cut(s)	430
PspGI	CCWGG	1 cut(s)	430
PspPI	GGNCC	1 cut(s)	310
PstNI	CAGNNNCTG	1 cut(s)	298
PsuI	RGATCY	1 cut(s)	262
SacI	GAGCTC	2 cut(s)	136, 609
SatI	GCNGC	1 cut(s)	119
Sau3AI	GATC	4 cut(s)	29, 262, 356, 408
Sau96I	GGNCC	1 cut(s)	310
SchI	GAGTC	2 cut(s)	190, 429
ScrFI	CCNGG	3 cut(s)	342, 432, 572
SduI	GDGCHC	2 cut(s)	136, 609
SfaNI	GCATC	2 cut(s)	285, 511
SinI	GGWCC	1 cut(s)	310
SmlI	CTYRAG	1 cut(s)	608
SmoI	CTYRAG	1 cut(s)	608
SseBI	AGGCCT	1 cut(s)	214
SsiI	CCGC	2 cut(s)	280, 418
SspMI	CTAG	4 cut(s)	41, 216, 222, 531
SstI	GAGCTC	2 cut(s)	136, 609
StuI	AGGCCT	1 cut(s)	214
StyD4I	CCNGG	3 cut(s)	340, 430, 570
StyI	CCWWGG	2 cut(s)	190, 380
TaaI	ACNGT	2 cut(s)	314, 581
TaiI	ACGT	2 cut(s)	115, 165
TaqI	TCGA	1 cut(s)	423
TaqII	GACCGA	1 cut(s)	659
TfiI	GAWTC	2 cut(s)	172, 370
TscAI	CASTG	2 cut(s)	160, 174
TseFI	GTSAC	2 cut(s)	270, 581
TseI	GCWGC	1 cut(s)	118
Tsp45I	GTSAC	2 cut(s)	270, 581
TspRI	CASTG	2 cut(s)	160, 174
Van91I	CCANNNNNTGG	1 cut(s)	298
VpaK11BI	GGWCC	1 cut(s)	310
XceI	RCATGY	1 cut(s)	430
XspI	CTAG	4 cut(s)	41, 216, 222, 531
Zsp2I	ATGCAT	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.