Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0014029

Physical Location & Seq

Genomic Coordinates Forward (+)

35766162 .. 35768343

Gene Structure 2182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1298000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGCTTCAACATTGGCTTTGTCTTCTTCGTCACCTTTGCTTTCAAACAAAGCAAGGTCTTCAATAACAGCGAACGCCACTCTCCCATCTTCGGCCGCCTTTCCGTCGCGGTGGAATAGGCTGCCGGTGGTGAAAGCTCAGGCCGGTGGAGACGGCAAGTTGGACGTGCAAGTCAATCAGGGCAACCAAGGGACTGATGTGGAGAGGAGGCCAAGGAGGCTGGCTGTGGATATTTCTCCTTTTGGTCTATTAGATCCCATCTCCCCAGTGAGAACAATGCGGCAAATGCTGGACACAGTCGACCGGCTTTTCGAAGACACGGTGGCATTCCCGGGAAGAAACAGAGCAGCAGGGGAAGTGCGCGCGCCTTGGGACATCAAAGACGACGAACACGAAATCAAAATGCGGTTCGACATGCCGGGGCTTTCGAAGGAGGACGTGAAGGTGTCGGTCGAGGACGATGTGCTAGTTATAAAGGGAGAGCAGAAGAAGGAAGAAGGCGGCGACGATTCGTGGTCGGGCAGGAGCTTTAGCTCCTACAATACCCGCCTTCAGCTGCCGGATAATTTGGAGAAGGACAAGATCAAGGCGGAGTTCAAGAATGGTGTTCTCTACATAGCCATTCCTAAGACCAAAGTTGAACGCAAGGTTATTGACGTTGCAATTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006950 GO:0006979 GO:0006996 GO:0008150 GO:0009266 GO:0009295 GO:0009314 GO:0009408 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0042221 GO:0042493 GO:0042542 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0101031 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

224

Amino Acids

24.68

Weight (kDa)

7.87

Isoelectric Point (pI)

46.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP20	PF00011	125 - 223	5.2e-30	Hsp20/alpha crystallin family
ArsA_HSP20	PF17886	132 - 206	3e-07	HSP20-like domain found in ArsA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27670
fragaria_vesca	FvH4_6g02120 FvH4_7g32800
malus_domestica	MD01G1227600.v1.1 MD07G1298000.v1.1
prunus_persica	Prupe.2G317700_v2.0.a1
pyrus_communis	pycom07g27040
rosa_chinensis	RchiOBHm_Chr1g0382761
rosa_laevigata	RLG00000026163
rosa_multiflora	Rmu_co8395491.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277930
rosa_rugosa	Rorug01G0435600
rosa_samantha	Rh1AG460800 Rh1BG417600 Rh1CG431200 Rh1DG449800
rosa_wichuraiana	Rw1G041080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	473
AasI	GACNNNNNNGTC	1 cut(s)	170
AccI	GTMKAC	1 cut(s)	300
AccII	CGCG	3 cut(s)	109, 363, 365
AciI	CCGC	7 cut(s)	96, 109, 280, 406, 501, 547, 590
AclWI	GGATC	1 cut(s)	248
AcoI	YGGCCR	1 cut(s)	93
AcuI	CTGAAG	1 cut(s)	536
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	5 cut(s)	9, 45, 63, 598, 641
AjiI	CACGTC	2 cut(s)	166, 439
AluBI	AGCT	4 cut(s)	137, 528, 534, 556
AluI	AGCT	4 cut(s)	137, 528, 534, 556
Alw26I	GTCTC	1 cut(s)	144
AlwI	GGATC	1 cut(s)	248
Ama87I	CYCGRG	1 cut(s)	331
AoxI	GGCC	3 cut(s)	93, 141, 209
ApeKI	GCWGC	3 cut(s)	121, 347, 556
ArsI	GACNNNNNNTTYG	2 cut(s)	293, 325
AspLEI	GCGC	3 cut(s)	363, 365, 367
AsuC2I	CCSGG	3 cut(s)	332, 333, 420
AsuHPI	GGTGA	2 cut(s)	24, 142
AsuII	TTCGAA	2 cut(s)	312, 428
AvaI	CYCGRG	1 cut(s)	331
BbsI	GAAGAC	3 cut(s)	15, 51, 321
BbvI	GCAGC	3 cut(s)	108, 359, 543
BccI	CCATC	2 cut(s)	94, 266
BceAI	ACGGC	1 cut(s)	169
BcnI	CCSGG	3 cut(s)	332, 333, 420
BcoDI	GTCTC	1 cut(s)	144
BfaI	CTAG	1 cut(s)	467
BglI	GCCNNNNNGGC	1 cut(s)	217
BisI	GCNGC	6 cut(s)	96, 122, 281, 348, 502, 557
BlsI	GCNGC	6 cut(s)	97, 123, 282, 349, 503, 558
Bme1390I	CCNGG	3 cut(s)	332, 333, 420
BmeT110I	CYCGRG	1 cut(s)	331
BmgBI	CACGTC	2 cut(s)	166, 439
BmrFI	CCNGG	3 cut(s)	332, 333, 420
BmrI	ACTGGG	1 cut(s)	260
BmuI	ACTGGG	1 cut(s)	260
BpiI	GAAGAC	3 cut(s)	15, 51, 321
Bpu10I	CCTNAGC	1 cut(s)	138
Bpu14I	TTCGAA	2 cut(s)	312, 428
BpuMI	CCSGG	3 cut(s)	332, 333, 420
BsaJI	CCNNGG	5 cut(s)	187, 212, 331, 368, 419
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse118I	RCCGGY	3 cut(s)	124, 143, 303
Bse1I	ACTGG	1 cut(s)	266
BseDI	CCNNGG	5 cut(s)	187, 212, 331, 368, 419
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMII	CTCAG	1 cut(s)	152
BseNI	ACTGG	1 cut(s)	266
BsePI	GCGCGC	2 cut(s)	361, 363
BseRI	GAGGAG	1 cut(s)	220
BseX3I	CGGCCG	1 cut(s)	93
BseXI	GCAGC	3 cut(s)	108, 359, 543
Bsh1236I	CGCG	3 cut(s)	109, 363, 365
Bsh1285I	CGRYCG	3 cut(s)	96, 304, 453
BshFI	GGCC	3 cut(s)	95, 143, 211
BsiEI	CGRYCG	3 cut(s)	96, 304, 453
BsiHKCI	CYCGRG	1 cut(s)	331
BsiSI	CCGG	6 cut(s)	125, 144, 304, 332, 419, 560
BslFI	GGGAC	2 cut(s)	205, 386
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmAI	GTCTC	1 cut(s)	144
BsmBI	CGTCTC	1 cut(s)	144
BsmFI	GGGAC	2 cut(s)	205, 386
BsmI	GAATGC	1 cut(s)	326
BsnI	GGCC	3 cut(s)	95, 143, 211
BsoBI	CYCGRG	1 cut(s)	331
Bsp119I	TTCGAA	2 cut(s)	312, 428
Bsp143I	GATC	2 cut(s)	253, 582
BspACI	CCGC	7 cut(s)	96, 109, 280, 406, 501, 547, 590
BspANI	GGCC	3 cut(s)	95, 143, 211
BspCNI	CTCAG	1 cut(s)	151
BspFNI	CGCG	3 cut(s)	109, 363, 365
BspPI	GGATC	1 cut(s)	248
BspT104I	TTCGAA	2 cut(s)	312, 428
BsrFI	RCCGGY	3 cut(s)	124, 143, 303
BsrI	ACTGG	1 cut(s)	266
BssAI	RCCGGY	3 cut(s)	124, 143, 303
BssECI	CCNNGG	5 cut(s)	187, 212, 331, 368, 419
BssHII	GCGCGC	2 cut(s)	361, 363
BssMI	GATC	2 cut(s)	253, 582
BssT1I	CCWWGG	3 cut(s)	187, 212, 368
Bst4CI	ACNGT	2 cut(s)	298, 322
BstBI	TTCGAA	2 cut(s)	312, 428
BstC8I	GCNNGC	3 cut(s)	222, 363, 365
BstDEI	CTNAG	2 cut(s)	138, 627
BstFNI	CGCG	3 cut(s)	109, 363, 365
BstHHI	GCGC	3 cut(s)	363, 365, 367
BstKTI	GATC	2 cut(s)	256, 585
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	2 cut(s)	253, 582
BstMCI	CGRYCG	3 cut(s)	96, 304, 453
BstMWI	GCNNNNNNNGC	2 cut(s)	217, 286
BstNSI	RCATGY	1 cut(s)	418
BstSCI	CCNGG	3 cut(s)	330, 331, 418
BstUI	CGCG	3 cut(s)	109, 363, 365
BstV1I	GCAGC	3 cut(s)	108, 359, 543
BstV2I	GAAGAC	3 cut(s)	15, 51, 321
BstX2I	RGATCY	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	253
BstZI	CGGCCG	1 cut(s)	93
BsuRI	GGCC	3 cut(s)	95, 143, 211
BtrI	CACGTC	2 cut(s)	166, 439
BtsIMutI	CAGTG	1 cut(s)	273
Cac8I	GCNNGC	3 cut(s)	222, 363, 365
CfoI	GCGC	3 cut(s)	363, 365, 367
Cfr10I	RCCGGY	3 cut(s)	124, 143, 303
Cfr9I	CCCGGG	1 cut(s)	331
CviAII	CATG	1 cut(s)	415
DdeI	CTNAG	2 cut(s)	138, 627
DpnI	GATC	2 cut(s)	255, 584
DpnII	GATC	2 cut(s)	253, 582
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
EaeI	YGGCCR	1 cut(s)	93
EagI	CGGCCG	1 cut(s)	93
EciI	GGCGGA	1 cut(s)	605
EclXI	CGGCCG	1 cut(s)	93
Eco130I	CCWWGG	3 cut(s)	187, 212, 368
Eco52I	CGGCCG	1 cut(s)	93
Eco57I	CTGAAG	1 cut(s)	536
Eco88I	CYCGRG	1 cut(s)	331
EcoT14I	CCWWGG	3 cut(s)	187, 212, 368
ErhI	CCWWGG	3 cut(s)	187, 212, 368
Esp3I	CGTCTC	1 cut(s)	144
FaeI	CATG	1 cut(s)	418
FaiI	YATR	3 cut(s)	416, 473, 617
FaqI	GGGAC	2 cut(s)	205, 386
FatI	CATG	1 cut(s)	414
FauI	CCCGC	1 cut(s)	554
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	6 cut(s)	96, 122, 281, 348, 502, 557
Fsp4HI	GCNGC	6 cut(s)	96, 122, 281, 348, 502, 557
FspBI	CTAG	1 cut(s)	467
GlaI	GCGC	3 cut(s)	362, 364, 366
GluI	GCNGC	6 cut(s)	96, 122, 281, 348, 502, 557
HaeIII	GGCC	3 cut(s)	95, 143, 211
HapII	CCGG	6 cut(s)	125, 144, 304, 332, 419, 560
HhaI	GCGC	3 cut(s)	363, 365, 367
Hin1II	CATG	1 cut(s)	418
Hin6I	GCGC	3 cut(s)	361, 363, 365
HinP1I	GCGC	3 cut(s)	361, 363, 365
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HinfI	GANTC	1 cut(s)	509
HpaII	CCGG	6 cut(s)	125, 144, 304, 332, 419, 560
HphI	GGTGA	2 cut(s)	24, 142
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188III	TCNNGA	1 cut(s)	598
Hpy8I	GTNNAC	1 cut(s)	301
Hpy99I	CGWCG	3 cut(s)	109, 389, 509
HpyAV	CCTTC	6 cut(s)	424, 436, 484, 491, 560, 568
HpyCH4III	ACNGT	2 cut(s)	298, 322
HpyCH4IV	ACGT	3 cut(s)	165, 438, 657
HpyCH4V	TGCA	2 cut(s)	169, 662
HpyF10VI	GCNNNNNNNGC	2 cut(s)	217, 286
HpyF3I	CTNAG	2 cut(s)	138, 627
HpySE526I	ACGT	3 cut(s)	165, 438, 657
Hsp92II	CATG	1 cut(s)	418
HspAI	GCGC	3 cut(s)	361, 363, 365
Kzo9I	GATC	2 cut(s)	253, 582
LmnI	GCTCC	2 cut(s)	525, 539
Lsp1109I	GCAGC	3 cut(s)	108, 359, 543
MaeI	CTAG	1 cut(s)	467
MaeII	ACGT	3 cut(s)	165, 438, 657
MaeIII	GTNAC	1 cut(s)	30
MalI	GATC	2 cut(s)	255, 584
MboI	GATC	2 cut(s)	253, 582
MboII	GAAGA	8 cut(s)	15, 18, 51, 81, 326, 348, 499, 506
MflI	RGATCY	1 cut(s)	253
MluCI	AATT	2 cut(s)	565, 663
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	5 cut(s)	198, 201, 210, 427, 448
MspA1I	CMGCKG	1 cut(s)	556
MspI	CCGG	6 cut(s)	125, 144, 304, 332, 419, 560
MspR9I	CCNGG	3 cut(s)	332, 333, 420
Mva1269I	GAATGC	1 cut(s)	326
MvnI	CGCG	3 cut(s)	109, 363, 365
MwoI	GCNNNNNNNGC	2 cut(s)	217, 286
NciI	CCSGG	3 cut(s)	332, 333, 420
NdeII	GATC	2 cut(s)	253, 582
NlaIII	CATG	1 cut(s)	418
NmuCI	GTSAC	1 cut(s)	30
NspI	RCATGY	1 cut(s)	418
NspV	TTCGAA	2 cut(s)	312, 428
PauI	GCGCGC	2 cut(s)	361, 363
PcsI	WCGNNNNNNNCGW	1 cut(s)	390
PctI	GAATGC	1 cut(s)	326
PfeI	GAWTC	1 cut(s)	509
PflFI	GACNNNGTC	1 cut(s)	296
PkrI	GCNGC	6 cut(s)	97, 123, 282, 349, 503, 558
PsiI	TTATAA	1 cut(s)	473
PsuI	RGATCY	1 cut(s)	253
PsyI	GACNNNGTC	1 cut(s)	296
PteI	GCGCGC	2 cut(s)	361, 363
PvuII	CAGCTG	1 cut(s)	556
SalI	GTCGAC	1 cut(s)	299
SatI	GCNGC	6 cut(s)	96, 122, 281, 348, 502, 557
Sau3AI	GATC	2 cut(s)	253, 582
ScrFI	CCNGG	3 cut(s)	332, 333, 420
SfuI	TTCGAA	2 cut(s)	312, 428
SmaI	CCCGGG	1 cut(s)	333
Sse9I	AATT	2 cut(s)	565, 663
SsiI	CCGC	7 cut(s)	96, 109, 280, 406, 501, 547, 590
SspMI	CTAG	1 cut(s)	467
StyD4I	CCNGG	3 cut(s)	330, 331, 418
StyI	CCWWGG	3 cut(s)	187, 212, 368
TaaI	ACNGT	2 cut(s)	298, 322
TaiI	ACGT	3 cut(s)	168, 441, 660
TaqI	TCGA	5 cut(s)	300, 312, 411, 428, 453
TaqII	GACCGA	1 cut(s)	439
TasI	AATT	2 cut(s)	565, 663
TauI	GCSGC	3 cut(s)	98, 283, 504
TfiI	GAWTC	1 cut(s)	509
TscAI	CASTG	1 cut(s)	273
TseFI	GTSAC	1 cut(s)	30
TseI	GCWGC	3 cut(s)	121, 347, 556
Tsp45I	GTSAC	1 cut(s)	30
TspGWI	ACGGA	1 cut(s)	93
TspMI	CCCGGG	1 cut(s)	331
TspRI	CASTG	1 cut(s)	273
Tth111I	GACNNNGTC	1 cut(s)	296
XceI	RCATGY	1 cut(s)	418
XmaI	CCCGGG	1 cut(s)	331
XmiI	GTMKAC	1 cut(s)	300
XspI	CTAG	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.