Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0014029

Physical Location & Seq

Genomic Coordinates Reverse (-)

1122096 .. 1124930

Gene Structure 2835 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00277930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCTTCAACATTGGCCTTGTCATCATCATCACCTTTTGTAGCAAGCAAAGCATTGGCTTCAGCTAAAGCAAATGTTATTTCGGGCTCAGCCAGCTTTCTTTCACCACCACGTAGACTGCCGGCGCTGAGAGCTCAGGCCGGTGGAGATGGCAATGTTGACGTGGCTGTTAATCAGGGTAGTAACCAAGGGACTCAAATGGAGAAGAGGCCTAGCTCTGGGTTGGCTGTGGATGTTTCACCTTTTGGTTTATTAGACCCCATGTCACCAATGAGGACTATGCGCCAGATGCTGGACACAATGGACCGTATTTTCGAAGACACTATGACACTCCCCGGCAGCAGAAGCCGATCACGAGGCGAGGTTCGCGCTCCTTGGGACATCAGAGACGATGAGAATGAGATCAGAATGCGGTTTGACATGCCAGGACTCTCTAAAGAGGAAGTCAAGGTGTCGATTGAGGATGATGTGCTTGTAATAAAGGGTGAGCAAAACAAGGAAGAGAACAAGGATGATGCATGGTTTAGTAGGAGCTTCAGTTCCTACAACACACGCCTTCAGCTTCCTGATAACTGTGACAAGAACAAAGTGAACGCAGAGTTCAAGAATGGTGTTCTGTACATCGCCATTCCTAAGACCAAAGTGGAGCGCAATGTGGTTGATGTAGAAGTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006950 GO:0006979 GO:0006996 GO:0008150 GO:0009266 GO:0009295 GO:0009314 GO:0009408 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0042221 GO:0042493 GO:0042542 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0101031 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

225

Amino Acids

24.82

Weight (kDa)

5.74

Isoelectric Point (pI)

51.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP20	PF00011	127 - 224	3.4e-28	Hsp20/alpha crystallin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27670
fragaria_vesca	FvH4_6g02120 FvH4_7g32800
malus_domestica	MD01G1227600.v1.1 MD07G1298000.v1.1
prunus_persica	Prupe.2G317700_v2.0.a1
pyrus_communis	pycom07g27040
rosa_chinensis	RchiOBHm_Chr1g0382761
rosa_laevigata	RLG00000026163
rosa_multiflora	Rmu_co8395491.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277930
rosa_rugosa	Rorug01G0435600
rosa_samantha	Rh1AG460800 Rh1BG417600 Rh1CG431200 Rh1DG449800
rosa_wichuraiana	Rw1G041080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	292
AccI	GTMKAC	1 cut(s)	115
AccII	CGCG	1 cut(s)	369
AciI	CCGC	1 cut(s)	412
AcuI	CTGAAG	3 cut(s)	45, 520, 542
AfaI	GTAC	1 cut(s)	620
AfiI	CCNNNNNNNGG	2 cut(s)	218, 292
AgsI	TTSAA	2 cut(s)	9, 604
AhdI	GACNNNNNGTC	1 cut(s)	262
AjiI	CACGTC	1 cut(s)	163
AjnI	CCWGG	1 cut(s)	424
AloI	GAACNNNNNNTCC	2 cut(s)	523, 555
AluBI	AGCT	6 cut(s)	65, 96, 134, 216, 534, 562
AluI	AGCT	6 cut(s)	65, 96, 134, 216, 534, 562
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	1 cut(s)	381
AlwNI	CAGNNNCTG	1 cut(s)	292
AoxI	GGCC	3 cut(s)	15, 138, 209
ApeKI	GCWGC	1 cut(s)	339
ArsI	GACNNNNNNTTYG	2 cut(s)	296, 328
AspLEI	GCGC	4 cut(s)	127, 285, 371, 651
AspS9I	GGNCC	1 cut(s)	304
AsuC2I	CCSGG	1 cut(s)	336
AsuHPI	GGTGA	5 cut(s)	24, 96, 231, 258, 497
AsuII	TTCGAA	1 cut(s)	315
AvaII	GGWCC	1 cut(s)	304
BanII	GRGCYC	2 cut(s)	89, 136
BauI	CACGAG	1 cut(s)	354
BbsI	GAAGAC	1 cut(s)	324
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	351
BccI	CCATC	1 cut(s)	143
BciT130I	CCWGG	1 cut(s)	426
BcnI	CCSGG	1 cut(s)	336
BcoDI	GTCTC	1 cut(s)	381
BfaI	CTAG	1 cut(s)	213
BfoI	RGCGCY	1 cut(s)	128
BisI	GCNGC	1 cut(s)	340
BlpI	GCTNAGC	1 cut(s)	88
BlsI	GCNGC	1 cut(s)	341
Bme1390I	CCNGG	2 cut(s)	336, 426
Bme18I	GGWCC	1 cut(s)	304
BmeRI	GACNNNNNGTC	1 cut(s)	262
BmgBI	CACGTC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	304
BmrFI	CCNGG	2 cut(s)	336, 426
BmsI	GCATC	2 cut(s)	279, 505
BpiI	GAAGAC	1 cut(s)	324
Bpu10I	CCTNAGC	1 cut(s)	135
Bpu1102I	GCTNAGC	1 cut(s)	88
Bpu14I	TTCGAA	1 cut(s)	315
BpuMI	CCSGG	1 cut(s)	336
BsaAI	YACGTR	1 cut(s)	113
BsaJI	CCNNGG	3 cut(s)	187, 334, 374
BsaXI	ACNNNNNCTCC	2 cut(s)	523, 553
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 292
Bse118I	RCCGGY	2 cut(s)	121, 140
Bse3DI	GCAATG	2 cut(s)	160, 658
BseBI	CCWGG	1 cut(s)	426
BseDI	CCNNGG	3 cut(s)	187, 334, 374
BseGI	GGATG	3 cut(s)	238, 469, 517
BseLI	CCNNNNNNNGG	2 cut(s)	218, 292
BseMI	GCAATG	2 cut(s)	160, 658
BseMII	CTCAG	3 cut(s)	102, 119, 149
BseXI	GCAGC	1 cut(s)	351
Bsh1236I	CGCG	1 cut(s)	369
BshFI	GGCC	3 cut(s)	17, 140, 211
BsiHKAI	GWGCWC	1 cut(s)	136
BsiSI	CCGG	3 cut(s)	122, 141, 336
BslFI	GGGAC	2 cut(s)	205, 392
BslI	CCNNNNNNNGG	2 cut(s)	218, 292
BsmAI	GTCTC	1 cut(s)	381
BsmBI	CGTCTC	1 cut(s)	381
BsmFI	GGGAC	2 cut(s)	205, 392
BsmI	GAATGC	1 cut(s)	414
BsnI	GGCC	3 cut(s)	17, 140, 211
Bsp119I	TTCGAA	1 cut(s)	315
Bsp1286I	GDGCHC	2 cut(s)	89, 136
Bsp1407I	TGTACA	1 cut(s)	618
Bsp143I	GATC	2 cut(s)	350, 402
Bsp1720I	GCTNAGC	1 cut(s)	88
BspACI	CCGC	1 cut(s)	412
BspANI	GGCC	3 cut(s)	17, 140, 211
BspCNI	CTCAG	3 cut(s)	101, 120, 148
BspFNI	CGCG	1 cut(s)	369
BspT104I	TTCGAA	1 cut(s)	315
BsrDI	GCAATG	2 cut(s)	160, 658
BsrFI	RCCGGY	2 cut(s)	121, 140
BsrGI	TGTACA	1 cut(s)	618
BssAI	RCCGGY	2 cut(s)	121, 140
BssECI	CCNNGG	3 cut(s)	187, 334, 374
BssMI	GATC	2 cut(s)	350, 402
BssSI	CACGAG	1 cut(s)	354
BssT1I	CCWWGG	2 cut(s)	187, 374
Bst2BI	CACGAG	1 cut(s)	354
Bst2UI	CCWGG	1 cut(s)	426
Bst4CI	ACNGT	2 cut(s)	308, 575
Bst6I	CTCTTC	2 cut(s)	200, 495
BstAUI	TGTACA	1 cut(s)	618
BstBAI	YACGTR	1 cut(s)	113
BstBI	TTCGAA	1 cut(s)	315
BstC8I	GCNNGC	3 cut(s)	46, 94, 123
BstDEI	CTNAG	4 cut(s)	88, 128, 135, 633
BstF5I	GGATG	3 cut(s)	238, 469, 517
BstFNI	CGCG	1 cut(s)	369
BstH2I	RGCGCY	1 cut(s)	128
BstHHI	GCGC	4 cut(s)	127, 285, 371, 651
BstKTI	GATC	2 cut(s)	353, 405
BstMAI	GTCTC	1 cut(s)	381
BstMBI	GATC	2 cut(s)	350, 402
BstMWI	GCNNNNNNNGC	6 cut(s)	50, 93, 131, 289, 345, 366
BstNI	CCWGG	1 cut(s)	426
BstNSI	RCATGY	1 cut(s)	424
BstSCI	CCNGG	2 cut(s)	334, 424
BstUI	CGCG	1 cut(s)	369
BstV1I	GCAGC	1 cut(s)	351
BstV2I	GAAGAC	1 cut(s)	324
BsuRI	GGCC	3 cut(s)	17, 140, 211
BtgZI	GCGATG	1 cut(s)	607
BtrI	CACGTC	1 cut(s)	163
BtsCI	GGATG	3 cut(s)	238, 469, 517
Cac8I	GCNNGC	3 cut(s)	46, 94, 123
CaiI	CAGNNNCTG	1 cut(s)	292
CfoI	GCGC	4 cut(s)	127, 285, 371, 651
Cfr10I	RCCGGY	2 cut(s)	121, 140
Cfr13I	GGNCC	1 cut(s)	304
Csp6I	GTAC	1 cut(s)	619
CviAII	CATG	3 cut(s)	262, 421, 519
CviQI	GTAC	1 cut(s)	619
DdeI	CTNAG	4 cut(s)	88, 128, 135, 633
DpnI	GATC	2 cut(s)	352, 404
DpnII	GATC	2 cut(s)	350, 402
DriI	GACNNNNNGTC	1 cut(s)	262
Eam1104I	CTCTTC	2 cut(s)	200, 495
Eam1105I	GACNNNNNGTC	1 cut(s)	262
EarI	CTCTTC	2 cut(s)	200, 495
Ecl136II	GAGCTC	1 cut(s)	134
Eco130I	CCWWGG	2 cut(s)	187, 374
Eco147I	AGGCCT	1 cut(s)	211
Eco24I	GRGCYC	2 cut(s)	89, 136
Eco47I	GGWCC	1 cut(s)	304
Eco53kI	GAGCTC	1 cut(s)	134
Eco57I	CTGAAG	3 cut(s)	45, 520, 542
EcoICRI	GAGCTC	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	424
EcoT14I	CCWWGG	2 cut(s)	187, 374
EcoT22I	ATGCAT	1 cut(s)	520
EcoT38I	GRGCYC	2 cut(s)	89, 136
ErhI	CCWWGG	2 cut(s)	187, 374
Esp3I	CGTCTC	1 cut(s)	381
FaeI	CATG	3 cut(s)	265, 424, 522
FaiI	YATR	5 cut(s)	263, 281, 326, 422, 520
FaqI	GGGAC	2 cut(s)	205, 392
FatI	CATG	3 cut(s)	261, 420, 518
FblI	GTMKAC	1 cut(s)	115
Fnu4HI	GCNGC	1 cut(s)	340
FokI	GGATG	3 cut(s)	245, 476, 524
FriOI	GRGCYC	2 cut(s)	89, 136
Fsp4HI	GCNGC	1 cut(s)	340
FspBI	CTAG	1 cut(s)	213
GlaI	GCGC	4 cut(s)	126, 284, 370, 650
GluI	GCNGC	1 cut(s)	340
HaeII	RGCGCY	1 cut(s)	128
HaeIII	GGCC	3 cut(s)	17, 140, 211
HapII	CCGG	3 cut(s)	122, 141, 336
HhaI	GCGC	4 cut(s)	127, 285, 371, 651
Hin1II	CATG	3 cut(s)	265, 424, 522
Hin6I	GCGC	4 cut(s)	125, 283, 369, 649
HinP1I	GCGC	4 cut(s)	125, 283, 369, 649
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	2 cut(s)	193, 429
HpaII	CCGG	3 cut(s)	122, 141, 336
HphI	GGTGA	5 cut(s)	24, 96, 231, 258, 497
Hpy166II	GTNNAC	3 cut(s)	116, 160, 592
Hpy188I	TCNGA	2 cut(s)	386, 407
Hpy188III	TCNNGA	3 cut(s)	354, 566, 604
Hpy8I	GTNNAC	3 cut(s)	116, 160, 592
HpyAV	CCTTC	1 cut(s)	566
HpyCH4III	ACNGT	2 cut(s)	308, 575
HpyCH4IV	ACGT	2 cut(s)	112, 162
HpyCH4V	TGCA	1 cut(s)	518
HpyF10VI	GCNNNNNNNGC	6 cut(s)	50, 93, 131, 289, 345, 366
HpyF3I	CTNAG	4 cut(s)	88, 128, 135, 633
HpySE526I	ACGT	2 cut(s)	112, 162
Hsp92II	CATG	3 cut(s)	265, 424, 522
HspAI	GCGC	4 cut(s)	125, 283, 369, 649
KroI	GCCGGC	1 cut(s)	121
KroNI	GCCGGC	1 cut(s)	123
Kzo9I	GATC	2 cut(s)	350, 402
LmnI	GCTCC	3 cut(s)	376, 531, 646
Lsp1109I	GCAGC	1 cut(s)	351
LweI	GCATC	2 cut(s)	279, 505
MaeI	CTAG	1 cut(s)	213
MaeII	ACGT	2 cut(s)	112, 162
MaeIII	GTNAC	3 cut(s)	182, 264, 575
MalI	GATC	2 cut(s)	352, 404
MboI	GATC	2 cut(s)	350, 402
MboII	GAAGA	3 cut(s)	217, 329, 512
MhlI	GDGCHC	2 cut(s)	89, 136
MlyI	GAGTC	2 cut(s)	187, 423
MnlI	CCTC	6 cut(s)	201, 267, 350, 355, 433, 454
Mph1103I	ATGCAT	1 cut(s)	520
MroNI	GCCGGC	1 cut(s)	121
MseI	TTAA	1 cut(s)	171
MspI	CCGG	3 cut(s)	122, 141, 336
MspR9I	CCNGG	2 cut(s)	336, 426
Mva1269I	GAATGC	1 cut(s)	414
MvaI	CCWGG	1 cut(s)	426
MvnI	CGCG	1 cut(s)	369
MwoI	GCNNNNNNNGC	6 cut(s)	50, 93, 131, 289, 345, 366
NaeI	GCCGGC	1 cut(s)	123
NciI	CCSGG	1 cut(s)	336
NdeII	GATC	2 cut(s)	350, 402
NgoMIV	GCCGGC	1 cut(s)	121
NlaIII	CATG	3 cut(s)	265, 424, 522
NmuCI	GTSAC	2 cut(s)	264, 575
NsiI	ATGCAT	1 cut(s)	520
NspI	RCATGY	1 cut(s)	424
NspV	TTCGAA	1 cut(s)	315
PceI	AGGCCT	1 cut(s)	211
PctI	GAATGC	1 cut(s)	414
PdiI	GCCGGC	1 cut(s)	123
PflMI	CCANNNNNTGG	1 cut(s)	292
PkrI	GCNGC	1 cut(s)	341
PleI	GAGTC	2 cut(s)	187, 423
PpsI	GAGTC	2 cut(s)	187, 423
Ppu21I	YACGTR	1 cut(s)	113
Psp124BI	GAGCTC	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	424
PspGI	CCWGG	1 cut(s)	424
PspPI	GGNCC	1 cut(s)	304
PstNI	CAGNNNCTG	1 cut(s)	292
RsaI	GTAC	1 cut(s)	620
RsaNI	GTAC	1 cut(s)	619
SacI	GAGCTC	1 cut(s)	136
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	1 cut(s)	340
Sau3AI	GATC	2 cut(s)	350, 402
Sau96I	GGNCC	1 cut(s)	304
SchI	GAGTC	2 cut(s)	187, 423
ScrFI	CCNGG	2 cut(s)	336, 426
SduI	GDGCHC	2 cut(s)	89, 136
SfaNI	GCATC	2 cut(s)	279, 505
SfuI	TTCGAA	1 cut(s)	315
SinI	GGWCC	1 cut(s)	304
SseBI	AGGCCT	1 cut(s)	211
SsiI	CCGC	1 cut(s)	412
SspMI	CTAG	1 cut(s)	213
SstI	GAGCTC	1 cut(s)	136
StuI	AGGCCT	1 cut(s)	211
StyD4I	CCNGG	2 cut(s)	334, 424
StyI	CCWWGG	2 cut(s)	187, 374
TaaI	ACNGT	2 cut(s)	308, 575
TaiI	ACGT	2 cut(s)	115, 165
TaqI	TCGA	2 cut(s)	315, 455
TatI	WGTACW	1 cut(s)	618
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TseFI	GTSAC	2 cut(s)	264, 575
TseI	GCWGC	1 cut(s)	339
Tsp45I	GTSAC	2 cut(s)	264, 575
Van91I	CCANNNNNTGG	1 cut(s)	292
VpaK11BI	GGWCC	1 cut(s)	304
XceI	RCATGY	1 cut(s)	424
XmiI	GTMKAC	1 cut(s)	115
XspI	CTAG	1 cut(s)	213
Zsp2I	ATGCAT	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.