Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0014029

Physical Location & Seq

Genomic Coordinates Reverse (-)

1238314 .. 1238971

Gene Structure 658 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g02120.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCTTCAACATTGGCCTTGCCATCATCATCACCTTTTGTAGCAACCAAAGCATTGGCTTCAGCCAGCTTTCCTTCACCACCACATAGGCTGCCGGCGCTGCGAGCTCAGGCCGGTGGAGATGGCAGTGTGGACGTGGCTGTGAATCAGGGTAGTAGTAACCGAGGGATTCAAATGGAGAAGAGGCCTGGTGCTAGAAGGTTGGCTGTGGATGTTTCACCTTTTGGTCTATTAGATCCCATGTCACCAATGAGGACAATGCACCAGATGCTGGACACAATGGACCGTATTTTCGAGGACACTATGATCCTCCCCGGCACCAGAAGCCGATTAGGAGGTGAGATTCGTGTGCATTGGGACATCAAAGACGACGAGAATGAGATCAAAATACGGTTCGACATGCCAGGACTCTCTAAAGAGGATGTCAAGGGTGAGCAAAACATGGAAGAGAACAAGGATGATGCACGGTCTAGTAGGAGCTTCAGTTCCTACGACACACGACTTCAGCTTCCGGATAACTGTGACAAGAGCAAAGTGAACGCAGAGCTCAAGAATGGTGTTCTCTACATCGCCATTCCTAAGACCAAAGTAGAGCGCAAGGTCGTTGATGTAGAAATCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006950 GO:0006979 GO:0006996 GO:0008150 GO:0009266 GO:0009295 GO:0009314 GO:0009408 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0042221 GO:0042493 GO:0042542 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0101031 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

208

Amino Acids

22.88

Weight (kDa)

6.85

Isoelectric Point (pI)

55.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP20	PF00011	120 - 206	1.7e-17	Hsp20/alpha crystallin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27670
fragaria_vesca	FvH4_6g02120 FvH4_7g32800
malus_domestica	MD01G1227600.v1.1 MD07G1298000.v1.1
prunus_persica	Prupe.2G317700_v2.0.a1
pyrus_communis	pycom07g27040
rosa_chinensis	RchiOBHm_Chr1g0382761
rosa_laevigata	RLG00000026163
rosa_multiflora	Rmu_co8395491.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277930
rosa_rugosa	Rorug01G0435600
rosa_samantha	Rh1AG460800 Rh1BG417600 Rh1CG431200 Rh1DG449800
rosa_wichuraiana	Rw1G041080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	317
AccB7I	CCANNNNNTGG	1 cut(s)	271
AccIII	TCCGGA	1 cut(s)	511
AclWI	GGATC	2 cut(s)	230, 301
AcuI	CTGAAG	3 cut(s)	45, 466, 488
AfiI	CCNNNNNNNGG	1 cut(s)	271
AgsI	TTSAA	2 cut(s)	9, 173
AjiI	CACGTC	1 cut(s)	136
AjnI	CCWGG	2 cut(s)	187, 403
AloI	GAACNNNNNNTCC	2 cut(s)	469, 501
AluBI	AGCT	5 cut(s)	69, 107, 480, 508, 547
AluI	AGCT	5 cut(s)	69, 107, 480, 508, 547
Alw21I	GWGCWC	2 cut(s)	109, 549
AlwI	GGATC	2 cut(s)	230, 301
AlwNI	CAGNNNCTG	1 cut(s)	271
Aor13HI	TCCGGA	1 cut(s)	511
AoxI	GGCC	3 cut(s)	15, 111, 185
ApeKI	GCWGC	2 cut(s)	91, 100
ArsI	GACNNNNNNTTYG	2 cut(s)	275, 307
AspLEI	GCGC	2 cut(s)	100, 597
AspS9I	GGNCC	1 cut(s)	283
AsuC2I	CCSGG	1 cut(s)	315
AsuHPI	GGTGA	6 cut(s)	24, 69, 210, 237, 350, 443
AvaII	GGWCC	1 cut(s)	283
BanI	GGYRCC	1 cut(s)	317
BanII	GRGCYC	2 cut(s)	109, 549
Bbv12I	GWGCWC	2 cut(s)	109, 549
BbvI	GCAGC	2 cut(s)	78, 87
BccI	CCATC	2 cut(s)	31, 116
BciT130I	CCWGG	2 cut(s)	189, 405
BcnI	CCSGG	1 cut(s)	315
BfaI	CTAG	2 cut(s)	195, 471
BfoI	RGCGCY	1 cut(s)	101
BisI	GCNGC	2 cut(s)	92, 101
BlsI	GCNGC	2 cut(s)	93, 102
Bme1390I	CCNGG	3 cut(s)	189, 315, 405
Bme18I	GGWCC	1 cut(s)	283
BmgBI	CACGTC	1 cut(s)	136
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	1 cut(s)	319
BmrFI	CCNGG	3 cut(s)	189, 315, 405
BmsI	GCATC	2 cut(s)	258, 451
Bpu10I	CCTNAGC	1 cut(s)	108
BpuEI	CTTGAG	1 cut(s)	533
BpuMI	CCSGG	1 cut(s)	315
BsaJI	CCNNGG	2 cut(s)	163, 313
BsaWI	WCCGGW	1 cut(s)	511
BsaXI	ACNNNNNCTCC	2 cut(s)	469, 499
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse118I	RCCGGY	2 cut(s)	94, 113
BseAI	TCCGGA	1 cut(s)	511
BseBI	CCWGG	2 cut(s)	189, 405
BseDI	CCNNGG	2 cut(s)	163, 313
BseGI	GGATG	3 cut(s)	217, 427, 463
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseMII	CTCAG	1 cut(s)	122
BseXI	GCAGC	2 cut(s)	78, 87
BshFI	GGCC	3 cut(s)	17, 113, 187
BshNI	GGYRCC	1 cut(s)	317
BsiHKAI	GWGCWC	2 cut(s)	109, 549
BsiSI	CCGG	4 cut(s)	95, 114, 315, 512
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmFI	GGGAC	1 cut(s)	371
BsnI	GGCC	3 cut(s)	17, 113, 187
Bsp1286I	GDGCHC	2 cut(s)	109, 549
Bsp13I	TCCGGA	1 cut(s)	511
Bsp143I	GATC	3 cut(s)	235, 306, 381
BspANI	GGCC	3 cut(s)	17, 113, 187
BspCNI	CTCAG	1 cut(s)	121
BspEI	TCCGGA	1 cut(s)	511
BspLI	GGNNCC	1 cut(s)	319
BspPI	GGATC	2 cut(s)	230, 301
BspT107I	GGYRCC	1 cut(s)	317
BsrFI	RCCGGY	2 cut(s)	94, 113
BssAI	RCCGGY	2 cut(s)	94, 113
BssECI	CCNNGG	2 cut(s)	163, 313
BssMI	GATC	3 cut(s)	235, 306, 381
Bst2UI	CCWGG	2 cut(s)	189, 405
Bst4CI	ACNGT	4 cut(s)	287, 393, 468, 521
Bst6I	CTCTTC	2 cut(s)	176, 441
BstAPI	GCANNNNNTGC	1 cut(s)	268
BstC8I	GCNNGC	3 cut(s)	67, 96, 105
BstDEI	CTNAG	2 cut(s)	108, 579
BstF5I	GGATG	3 cut(s)	217, 427, 463
BstH2I	RGCGCY	1 cut(s)	101
BstHHI	GCGC	2 cut(s)	100, 597
BstKTI	GATC	3 cut(s)	238, 309, 384
BstMBI	GATC	3 cut(s)	235, 306, 381
BstMWI	GCNNNNNNNGC	6 cut(s)	50, 97, 100, 104, 268, 324
BstNI	CCWGG	2 cut(s)	189, 405
BstNSI	RCATGY	1 cut(s)	403
BstSCI	CCNGG	3 cut(s)	187, 313, 403
BstV1I	GCAGC	2 cut(s)	78, 87
BstX2I	RGATCY	1 cut(s)	235
BstXI	CCANNNNNNTGG	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	235
BsuRI	GGCC	3 cut(s)	17, 113, 187
BtgZI	GCGATG	1 cut(s)	553
BtrI	CACGTC	1 cut(s)	136
BtsCI	GGATG	3 cut(s)	217, 427, 463
BtsI	GCAGTG	1 cut(s)	133
BtsIMutI	CAGTG	1 cut(s)	133
Cac8I	GCNNGC	3 cut(s)	67, 96, 105
CaiI	CAGNNNCTG	1 cut(s)	271
CfoI	GCGC	2 cut(s)	100, 597
Cfr10I	RCCGGY	2 cut(s)	94, 113
Cfr13I	GGNCC	1 cut(s)	283
CviAII	CATG	3 cut(s)	241, 400, 442
DdeI	CTNAG	2 cut(s)	108, 579
DpnI	GATC	3 cut(s)	237, 308, 383
DpnII	GATC	3 cut(s)	235, 306, 381
Eam1104I	CTCTTC	2 cut(s)	176, 441
EarI	CTCTTC	2 cut(s)	176, 441
Ecl136II	GAGCTC	2 cut(s)	107, 547
Eco147I	AGGCCT	1 cut(s)	187
Eco24I	GRGCYC	2 cut(s)	109, 549
Eco47I	GGWCC	1 cut(s)	283
Eco53kI	GAGCTC	2 cut(s)	107, 547
Eco57I	CTGAAG	3 cut(s)	45, 466, 488
EcoICRI	GAGCTC	2 cut(s)	107, 547
EcoRII	CCWGG	2 cut(s)	187, 403
EcoT38I	GRGCYC	2 cut(s)	109, 549
FaeI	CATG	3 cut(s)	244, 403, 445
FaiI	YATR	5 cut(s)	87, 242, 305, 401, 443
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	3 cut(s)	240, 399, 441
Fnu4HI	GCNGC	2 cut(s)	92, 101
FokI	GGATG	3 cut(s)	224, 434, 470
FriOI	GRGCYC	2 cut(s)	109, 549
Fsp4HI	GCNGC	2 cut(s)	92, 101
FspBI	CTAG	2 cut(s)	195, 471
GlaI	GCGC	2 cut(s)	99, 596
GluI	GCNGC	2 cut(s)	92, 101
HaeII	RGCGCY	1 cut(s)	101
HaeIII	GGCC	3 cut(s)	17, 113, 187
HapII	CCGG	4 cut(s)	95, 114, 315, 512
HhaI	GCGC	2 cut(s)	100, 597
Hin1II	CATG	3 cut(s)	244, 403, 445
Hin6I	GCGC	2 cut(s)	98, 595
HinP1I	GCGC	2 cut(s)	98, 595
HinfI	GANTC	4 cut(s)	145, 169, 343, 408
HpaII	CCGG	4 cut(s)	95, 114, 315, 512
HphI	GGTGA	6 cut(s)	24, 69, 210, 237, 350, 443
Hpy166II	GTNNAC	2 cut(s)	133, 538
Hpy188III	TCNNGA	2 cut(s)	512, 550
Hpy8I	GTNNAC	2 cut(s)	133, 538
Hpy99I	CGWCG	1 cut(s)	374
HpyAV	CCTTC	2 cut(s)	84, 192
HpyCH4III	ACNGT	4 cut(s)	287, 393, 468, 521
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	3 cut(s)	262, 352, 464
HpyF10VI	GCNNNNNNNGC	6 cut(s)	50, 97, 100, 104, 268, 324
HpyF3I	CTNAG	2 cut(s)	108, 579
HpySE526I	ACGT	1 cut(s)	135
Hsp92II	CATG	3 cut(s)	244, 403, 445
HspAI	GCGC	2 cut(s)	98, 595
Kpn2I	TCCGGA	1 cut(s)	511
KroI	GCCGGC	1 cut(s)	94
KroNI	GCCGGC	1 cut(s)	96
Kzo9I	GATC	3 cut(s)	235, 306, 381
LmnI	GCTCC	1 cut(s)	477
Lsp1109I	GCAGC	2 cut(s)	78, 87
LweI	GCATC	2 cut(s)	258, 451
MaeI	CTAG	2 cut(s)	195, 471
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	3 cut(s)	158, 243, 521
MalI	GATC	3 cut(s)	237, 308, 383
MboI	GATC	3 cut(s)	235, 306, 381
MboII	GAAGA	2 cut(s)	193, 458
MflI	RGATCY	1 cut(s)	235
MhlI	GDGCHC	2 cut(s)	109, 549
MlyI	GAGTC	1 cut(s)	402
MnlI	CCTC	7 cut(s)	158, 177, 246, 289, 320, 329, 412
MroI	TCCGGA	1 cut(s)	511
MroNI	GCCGGC	1 cut(s)	94
MspI	CCGG	4 cut(s)	95, 114, 315, 512
MspR9I	CCNGG	3 cut(s)	189, 315, 405
MvaI	CCWGG	2 cut(s)	189, 405
MwoI	GCNNNNNNNGC	6 cut(s)	50, 97, 100, 104, 268, 324
NaeI	GCCGGC	1 cut(s)	96
NciI	CCSGG	1 cut(s)	315
NdeII	GATC	3 cut(s)	235, 306, 381
NgoMIV	GCCGGC	1 cut(s)	94
NlaIII	CATG	3 cut(s)	244, 403, 445
NlaIV	GGNNCC	1 cut(s)	319
NmuCI	GTSAC	2 cut(s)	243, 521
NspI	RCATGY	1 cut(s)	403
PceI	AGGCCT	1 cut(s)	187
PdiI	GCCGGC	1 cut(s)	96
PfeI	GAWTC	3 cut(s)	145, 169, 343
PflMI	CCANNNNNTGG	1 cut(s)	271
PkrI	GCNGC	2 cut(s)	93, 102
PleI	GAGTC	1 cut(s)	402
PpsI	GAGTC	1 cut(s)	402
Psp124BI	GAGCTC	2 cut(s)	109, 549
Psp6I	CCWGG	2 cut(s)	187, 403
PspGI	CCWGG	2 cut(s)	187, 403
PspN4I	GGNNCC	1 cut(s)	319
PspPI	GGNCC	1 cut(s)	283
PstNI	CAGNNNCTG	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	235
SacI	GAGCTC	2 cut(s)	109, 549
SatI	GCNGC	2 cut(s)	92, 101
Sau3AI	GATC	3 cut(s)	235, 306, 381
Sau96I	GGNCC	1 cut(s)	283
SchI	GAGTC	1 cut(s)	402
ScrFI	CCNGG	3 cut(s)	189, 315, 405
SduI	GDGCHC	2 cut(s)	109, 549
SfaNI	GCATC	2 cut(s)	258, 451
SinI	GGWCC	1 cut(s)	283
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
SseBI	AGGCCT	1 cut(s)	187
SspMI	CTAG	2 cut(s)	195, 471
SstI	GAGCTC	2 cut(s)	109, 549
StuI	AGGCCT	1 cut(s)	187
StyD4I	CCNGG	3 cut(s)	187, 313, 403
TaaI	ACNGT	4 cut(s)	287, 393, 468, 521
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	2 cut(s)	294, 396
TfiI	GAWTC	3 cut(s)	145, 169, 343
TscAI	CASTG	1 cut(s)	133
TseFI	GTSAC	2 cut(s)	243, 521
TseI	GCWGC	2 cut(s)	91, 100
Tsp45I	GTSAC	2 cut(s)	243, 521
TspRI	CASTG	1 cut(s)	133
Van91I	CCANNNNNTGG	1 cut(s)	271
VpaK11BI	GGWCC	1 cut(s)	283
XceI	RCATGY	1 cut(s)	403
XspI	CTAG	2 cut(s)	195, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.