AT4G27750

Cell division control protein 14, SIN component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0014509
Physical Location & Seq
Forward (+)
13841639 .. 13843653
2015 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G27750.1

Sequence Viewer

Length: 918 bp
ATGTATCTGAAGAGACCGATATGGAGCGATGGCGCGTCAGCAACGCCGGAGAATCCATCAGAATCGGAGACCGGAGAAGAATCAGACGCGGCGTCGATGGTAGTCGAAGAGCTGGTGACTTCTCTCAATACACAGAGACTTTACAGGGAGCTGACACTATCCCTCAGGACCGGTTTACGCGATGCTTGCGCTGAATTCTCCTTCCTTCGCATCCGTGGTCTTAGATCTCTTCTCAAAACTCTCCGAACTGTCGCTGATTCAGATTCAATCATTCGTCTCTTCTCTCATACCCAAACCATTTCCGATCTCCAACTGGTTCCGGTGCTTTTTCAACATTCATTGAAAGAAGCGGAGGATGATAAAGTGACGAGCTTGGATCATATATTCAGTGTGGAGCCGATGAAGATAACAAGTCCTTCTACGGATGCTGAGGTTGCTGTTGCTCTTAGAGTTCTCGAAGGATGCTGCCTTCTCCATCCTCAGAGCACTGTCCTGGCTCATAAGCATGGTGCAGTCCGCGTAATGATGAATGTATTATCAACACGAGGAGTACTTGAGCAAGGAGCCTGCTTGGATGCCTTAATCTCAGTATTGCTGGATTCATCAGCAAATCAGGTGGATTTTGGAGCTTGCAATGGCATTGAAGAGGTTGCAATGCTCATGCGAGACAAACAAGCTGATGAAAACCTCAGGTTAAGATGCGGAGAGTTCTTACTACTGTTAGTTGGACACGTAAATGGGAAGGATCGATCTCCAATAGCGAGTGTAAATGAAGACATCAGGCGCCTCTTGGGTGAAAAATCTGCTTCTTTAATATGGGCGGCGAGTCAATTCGGTTCAACAGGTGATCCTGAACAAAGAATCACGGCGCTTCATATCCAGGCTGGTAGAGTGCTCGAGTCTCTTGACTTGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDC14

Protein Analysis

305

Amino Acids

33.49

Weight (kDa)

5.17

Isoelectric Point (pI)

42.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDC14 PF08045 137 - 239 1.4e-11 Cell division control protein 14, SIN component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014509)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27750
fragaria_vesca FvH4_7g14460
malus_domestica MD01G1064000.v1.1 MD01G1064500.v1.1 MD07G1135900.v1.1
prunus_persica Prupe.2G171600_v2.0.a1
pyrus_communis pycom07g13330
rosa_chinensis RchiOBHm_Chr1g0355871
rosa_laevigata RLG00000028120
rosa_multiflora Rmu_sc0002284.1_g000020 Rmu_sc0004705.1_g000020
rosa_roxburghii Rroxscaffold_4G00299960
rosa_rugosa Rorug01G0248100
rosa_samantha Rh1AG261300 Rh1CG244400 Rh1DG258000
rosa_wichuraiana Rw1G023070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 783
AccII CGCG 4 cut(s) 35, 89, 180, 519
AciI CCGC 5 cut(s) 89, 350, 517, 702, 821
AclWI GGATC 3 cut(s) 384, 753, 842
AcsI RAATTY 1 cut(s) 194
AcuI CTGAAG 1 cut(s) 29
AcyI GRCGYC 2 cut(s) 92, 784
AfaI GTAC 2 cut(s) 552, 914
AflIII ACRYGT 1 cut(s) 730
AgeI ACCGGT 1 cut(s) 170
AgsI TTSAA 5 cut(s) 267, 332, 343, 644, 840
AhdI GACNNNNNGTC 1 cut(s) 91
AjnI CCWGG 2 cut(s) 492, 879
AluBI AGCT 5 cut(s) 112, 151, 372, 629, 677
AluI AGCT 5 cut(s) 112, 151, 372, 629, 677
Alw21I GWGCWC 2 cut(s) 488, 897
Alw26I GTCTC 6 cut(s) 7, 62, 130, 281, 660, 906
AlwI GGATC 3 cut(s) 384, 753, 842
Ama87I CYCGRG 1 cut(s) 896
ApeKI GCWGC 1 cut(s) 465
ApoI RAATTY 1 cut(s) 194
AsiGI ACCGGT 1 cut(s) 170
AspLEI GCGC 4 cut(s) 35, 191, 786, 871
AspS9I GGNCC 1 cut(s) 168
AsuHPI GGTGA 3 cut(s) 127, 806, 857
AvaI CYCGRG 1 cut(s) 896
AvaII GGWCC 1 cut(s) 168
AxyI CCTNAGG 2 cut(s) 164, 689
BanI GGYRCC 1 cut(s) 783
BauI CACGAG 1 cut(s) 543
BbsI GAAGAC 1 cut(s) 780
Bbv12I GWGCWC 2 cut(s) 488, 897
BbvCI CCTCAGC 1 cut(s) 429
BbvI GCAGC 1 cut(s) 452
BccI CCATC 4 cut(s) 23, 64, 91, 483
BceAI ACGGC 1 cut(s) 882
BciT130I CCWGG 2 cut(s) 494, 881
BcoDI GTCTC 6 cut(s) 7, 62, 130, 281, 660, 906
BfoI RGCGCY 2 cut(s) 787, 872
BglII AGATCT 1 cut(s) 224
BisI GCNGC 3 cut(s) 90, 466, 822
BlsI GCNGC 3 cut(s) 91, 467, 823
BmcAI AGTACT 1 cut(s) 552
Bme1390I CCNGG 2 cut(s) 494, 881
Bme18I GGWCC 1 cut(s) 168
BmeRI GACNNNNNGTC 1 cut(s) 91
BmeT110I CYCGRG 1 cut(s) 896
BmgT120I GGNCC 1 cut(s) 168
BmiI GGNNCC 4 cut(s) 318, 396, 565, 785
BmrFI CCNGG 2 cut(s) 494, 881
BmsI GCATC 6 cut(s) 172, 219, 415, 452, 565, 689
BpiI GAAGAC 1 cut(s) 780
Bpu10I CCTNAGC 1 cut(s) 429
BpuEI CTTGAG 1 cut(s) 575
Bsa29I ATCGAT 1 cut(s) 748
BsaAI YACGTR 1 cut(s) 733
BsaHI GRCGYC 2 cut(s) 92, 784
BsaI GGTCTC 2 cut(s) 7, 62
BsaJI CCNNGG 1 cut(s) 214
BsaWI WCCGGW 3 cut(s) 71, 170, 319
Bse118I RCCGGY 1 cut(s) 170
Bse1I ACTGG 1 cut(s) 318
Bse21I CCTNAGG 2 cut(s) 164, 689
Bse3DI GCAATG 2 cut(s) 640, 660
BseBI CCWGG 2 cut(s) 494, 881
BseCI ATCGAT 1 cut(s) 748
BseDI CCNNGG 1 cut(s) 214
BseGI GGATG 6 cut(s) 210, 361, 430, 467, 475, 580
BseMI GCAATG 2 cut(s) 640, 660
BseMII CTCAG 5 cut(s) 178, 420, 494, 600, 703
BseNI ACTGG 1 cut(s) 318
BseRI GAGGAG 1 cut(s) 561
BseXI GCAGC 1 cut(s) 452
BsgI GTGCAG 1 cut(s) 531
Bsh1236I CGCG 4 cut(s) 35, 89, 180, 519
BshNI GGYRCC 1 cut(s) 783
BshTI ACCGGT 1 cut(s) 170
BshVI ATCGAT 1 cut(s) 748
BsiHKAI GWGCWC 2 cut(s) 488, 897
BsiHKCI CYCGRG 1 cut(s) 896
BsiSI CCGG 4 cut(s) 47, 72, 171, 320
BsmAI GTCTC 6 cut(s) 7, 62, 130, 281, 660, 906
BsmBI CGTCTC 1 cut(s) 281
Bso31I GGTCTC 2 cut(s) 7, 62
BsoBI CYCGRG 1 cut(s) 896
Bsp1286I GDGCHC 2 cut(s) 488, 897
Bsp143I GATC 6 cut(s) 224, 304, 376, 745, 749, 847
BspACI CCGC 5 cut(s) 89, 350, 517, 702, 821
BspCNI CTCAG 5 cut(s) 177, 421, 493, 599, 702
BspDI ATCGAT 1 cut(s) 748
BspFNI CGCG 4 cut(s) 35, 89, 180, 519
BspLI GGNNCC 4 cut(s) 318, 396, 565, 785
BspPI GGATC 3 cut(s) 384, 753, 842
BspQI GCTCTTC 1 cut(s) 102
BspT107I GGYRCC 1 cut(s) 783
BspTNI GGTCTC 2 cut(s) 7, 62
BsrDI GCAATG 2 cut(s) 640, 660
BsrFI RCCGGY 1 cut(s) 170
BsrI ACTGG 1 cut(s) 318
BssAI RCCGGY 1 cut(s) 170
BssECI CCNNGG 1 cut(s) 214
BssMI GATC 6 cut(s) 224, 304, 376, 745, 749, 847
BssNI GRCGYC 2 cut(s) 92, 784
BssSI CACGAG 1 cut(s) 543
Bst2BI CACGAG 1 cut(s) 543
Bst2UI CCWGG 2 cut(s) 494, 881
Bst4CI ACNGT 3 cut(s) 250, 490, 720
Bst6I CTCTTC 5 cut(s) 5, 102, 234, 284, 639
BstACI GRCGYC 2 cut(s) 92, 784
BstBAI YACGTR 1 cut(s) 733
BstC8I GCNNGC 3 cut(s) 187, 568, 631
BstDEI CTNAG 7 cut(s) 164, 221, 429, 446, 480, 586, 689
BstDSI CCRYGG 1 cut(s) 214
BstF5I GGATG 6 cut(s) 210, 361, 430, 467, 475, 580
BstFNI CGCG 4 cut(s) 35, 89, 180, 519
BstH2I RGCGCY 2 cut(s) 787, 872
BstHHI GCGC 4 cut(s) 35, 191, 786, 871
BstKTI GATC 6 cut(s) 227, 307, 379, 748, 752, 850
BstMAI GTCTC 6 cut(s) 7, 62, 130, 281, 660, 906
BstMBI GATC 6 cut(s) 224, 304, 376, 745, 749, 847
BstMWI GCNNNNNNNGC 2 cut(s) 186, 434
BstNI CCWGG 2 cut(s) 494, 881
BstSCI CCNGG 2 cut(s) 492, 879
BstUI CGCG 4 cut(s) 35, 89, 180, 519
BstV1I GCAGC 1 cut(s) 452
BstV2I GAAGAC 1 cut(s) 780
BstX2I RGATCY 1 cut(s) 224
BstYI RGATCY 1 cut(s) 224
Bsu15I ATCGAT 1 cut(s) 748
Bsu36I CCTNAGG 2 cut(s) 164, 689
BsuTUI ATCGAT 1 cut(s) 748
BtgI CCRYGG 1 cut(s) 214
BtgZI GCGATG 2 cut(s) 42, 195
BtsCI GGATG 6 cut(s) 210, 361, 430, 467, 475, 580
BtsIMutI CAGTG 2 cut(s) 394, 486
Cac8I GCNNGC 3 cut(s) 187, 568, 631
CfoI GCGC 4 cut(s) 35, 191, 786, 871
Cfr10I RCCGGY 1 cut(s) 170
Cfr13I GGNCC 1 cut(s) 168
ClaI ATCGAT 1 cut(s) 748
CseI GACGC 3 cut(s) 24, 81, 95
Csp6I GTAC 2 cut(s) 551, 913
CspAI ACCGGT 1 cut(s) 170
CspCI CAANNNNNGTGG 2 cut(s) 597, 632
CviAII CATG 2 cut(s) 506, 661
CviJI RGCY 9 cut(s) 112, 151, 372, 397, 497, 566, 629, 677, 884
CviKI_1 RGCY 9 cut(s) 112, 151, 372, 397, 497, 566, 629, 677, 884
CviQI GTAC 2 cut(s) 551, 913
DdeI CTNAG 7 cut(s) 164, 221, 429, 446, 480, 586, 689
DinI GGCGCC 1 cut(s) 785
DpnI GATC 6 cut(s) 226, 306, 378, 747, 751, 849
DpnII GATC 6 cut(s) 224, 304, 376, 745, 749, 847
DriI GACNNNNNGTC 1 cut(s) 91
Eam1104I CTCTTC 5 cut(s) 5, 102, 234, 284, 639
Eam1105I GACNNNNNGTC 1 cut(s) 91
EarI CTCTTC 5 cut(s) 5, 102, 234, 284, 639
Eco31I GGTCTC 2 cut(s) 7, 62
Eco47I GGWCC 1 cut(s) 168
Eco57I CTGAAG 1 cut(s) 29
Eco81I CCTNAGG 2 cut(s) 164, 689
Eco88I CYCGRG 1 cut(s) 896
EcoRI GAATTC 1 cut(s) 194
EcoRII CCWGG 2 cut(s) 492, 879
EgeI GGCGCC 1 cut(s) 785
EheI GGCGCC 1 cut(s) 785
Esp3I CGTCTC 1 cut(s) 281
FaeI CATG 2 cut(s) 509, 664
FaiI YATR 9 cut(s) 22, 288, 381, 383, 501, 507, 662, 817, 876
FatI CATG 2 cut(s) 505, 660
Fnu4HI GCNGC 3 cut(s) 90, 466, 822
FokI GGATG 6 cut(s) 197, 368, 437, 462, 474, 587
Fsp4HI GCNGC 3 cut(s) 90, 466, 822
GlaI GCGC 4 cut(s) 34, 190, 785, 870
GluI GCNGC 3 cut(s) 90, 466, 822
HaeII RGCGCY 2 cut(s) 787, 872
HapII CCGG 4 cut(s) 47, 72, 171, 320
HgaI GACGC 3 cut(s) 24, 81, 95
HhaI GCGC 4 cut(s) 35, 191, 786, 871
Hin1I GRCGYC 2 cut(s) 92, 784
Hin1II CATG 2 cut(s) 509, 664
Hin6I GCGC 4 cut(s) 33, 189, 784, 869
HinP1I GCGC 4 cut(s) 33, 189, 784, 869
HinfI GANTC 9 cut(s) 52, 62, 80, 257, 263, 599, 826, 861, 899
HpaII CCGG 4 cut(s) 47, 72, 171, 320
HphI GGTGA 3 cut(s) 127, 806, 857
Hpy166II GTNNAC 1 cut(s) 176
Hpy188I TCNGA 8 cut(s) 9, 61, 67, 85, 245, 262, 304, 483
Hpy188III TCNNGA 4 cut(s) 166, 455, 851, 905
Hpy8I GTNNAC 1 cut(s) 176
Hpy99I CGWCG 1 cut(s) 97
HpyAV CCTTC 6 cut(s) 211, 215, 426, 452, 479, 736
HpyCH4III ACNGT 3 cut(s) 250, 490, 720
HpyCH4IV ACGT 1 cut(s) 732
HpyCH4V TGCA 3 cut(s) 512, 633, 653
HpyF10VI GCNNNNNNNGC 2 cut(s) 186, 434
HpyF3I CTNAG 7 cut(s) 164, 221, 429, 446, 480, 586, 689
HpySE526I ACGT 1 cut(s) 732
Hsp92I GRCGYC 2 cut(s) 92, 784
Hsp92II CATG 2 cut(s) 509, 664
HspAI GCGC 4 cut(s) 33, 189, 784, 869
KasI GGCGCC 1 cut(s) 783
Kzo9I GATC 6 cut(s) 224, 304, 376, 745, 749, 847
LguI GCTCTTC 1 cut(s) 102
LmnI GCTCC 5 cut(s) 24, 148, 394, 563, 626
Lsp1109I GCAGC 1 cut(s) 452
LweI GCATC 6 cut(s) 172, 219, 415, 452, 565, 689
MaeII ACGT 1 cut(s) 732
MaeIII GTNAC 2 cut(s) 115, 364
MalI GATC 6 cut(s) 226, 306, 378, 747, 751, 849
MboI GATC 6 cut(s) 224, 304, 376, 745, 749, 847
MboII GAAGA 8 cut(s) 22, 89, 119, 221, 271, 415, 656, 785
MflI RGATCY 1 cut(s) 224
MhlI GDGCHC 2 cut(s) 488, 897
MluCI AATT 2 cut(s) 194, 830
Mly113I GGCGCC 1 cut(s) 784
MlyI GAGTC 2 cut(s) 835, 908
MmeI TCCRAC 2 cut(s) 334, 706
MnlI CCTC 8 cut(s) 173, 346, 424, 489, 539, 640, 698, 797
MseI TTAA 3 cut(s) 581, 695, 812
MslI CAYNNNNRTG 2 cut(s) 504, 735
MspI CCGG 4 cut(s) 47, 72, 171, 320
MspR9I CCNGG 2 cut(s) 494, 881
MvaI CCWGG 2 cut(s) 494, 881
MvnI CGCG 4 cut(s) 35, 89, 180, 519
MwoI GCNNNNNNNGC 2 cut(s) 186, 434
NarI GGCGCC 1 cut(s) 784
NdeII GATC 6 cut(s) 224, 304, 376, 745, 749, 847
NlaIII CATG 2 cut(s) 509, 664
NlaIV GGNNCC 4 cut(s) 318, 396, 565, 785
NmuCI GTSAC 2 cut(s) 115, 364
PaeR7I CTCGAG 1 cut(s) 896
PciSI GCTCTTC 1 cut(s) 102
PfeI GAWTC 7 cut(s) 52, 62, 80, 257, 263, 599, 861
PinAI ACCGGT 1 cut(s) 170
PkrI GCNGC 3 cut(s) 91, 467, 823
PleI GAGTC 2 cut(s) 834, 907
PluTI GGCGCC 1 cut(s) 787
PpsI GAGTC 2 cut(s) 834, 907
Ppu21I YACGTR 1 cut(s) 733
Psp6I CCWGG 2 cut(s) 492, 879
PspGI CCWGG 2 cut(s) 492, 879
PspN4I GGNNCC 4 cut(s) 318, 396, 565, 785
PspPI GGNCC 1 cut(s) 168
PspXI VCTCGAGB 1 cut(s) 896
PsuI RGATCY 1 cut(s) 224
RsaI GTAC 2 cut(s) 552, 914
RsaNI GTAC 2 cut(s) 551, 913
RseI CAYNNNNRTG 2 cut(s) 504, 735
SapI GCTCTTC 1 cut(s) 102
SaqAI TTAA 3 cut(s) 581, 695, 812
SatI GCNGC 3 cut(s) 90, 466, 822
Sau3AI GATC 6 cut(s) 224, 304, 376, 745, 749, 847
Sau96I GGNCC 1 cut(s) 168
ScaI AGTACT 1 cut(s) 552
SchI GAGTC 2 cut(s) 835, 908
ScrFI CCNGG 2 cut(s) 494, 881
SduI GDGCHC 2 cut(s) 488, 897
SfaNI GCATC 6 cut(s) 172, 219, 415, 452, 565, 689
SfoI GGCGCC 1 cut(s) 785
Sfr274I CTCGAG 1 cut(s) 896
SinI GGWCC 1 cut(s) 168
SlaI CTCGAG 1 cut(s) 896
SmiMI CAYNNNNRTG 2 cut(s) 504, 735
SmlI CTYRAG 2 cut(s) 554, 896
SmoI CTYRAG 2 cut(s) 554, 896
Sse9I AATT 2 cut(s) 194, 830
SsiI CCGC 5 cut(s) 89, 350, 517, 702, 821
SspDI GGCGCC 1 cut(s) 783
StyD4I CCNGG 2 cut(s) 492, 879
TaaI ACNGT 3 cut(s) 250, 490, 720
TaiI ACGT 1 cut(s) 735
TaqI TCGA 5 cut(s) 95, 105, 456, 748, 897
TaqII GACCGA 1 cut(s) 31
TasI AATT 2 cut(s) 194, 830
TatI WGTACW 2 cut(s) 550, 912
TauI GCSGC 2 cut(s) 92, 824
TfiI GAWTC 7 cut(s) 52, 62, 80, 257, 263, 599, 861
Tru1I TTAA 3 cut(s) 581, 695, 812
Tru9I TTAA 3 cut(s) 581, 695, 812
TscAI CASTG 2 cut(s) 394, 493
TseFI GTSAC 2 cut(s) 115, 364
TseI GCWGC 1 cut(s) 465
Tsp45I GTSAC 2 cut(s) 115, 364
TspDTI ATGAA 7 cut(s) 327, 416, 542, 591, 696, 786, 863
TspGWI ACGGA 2 cut(s) 203, 437
TspRI CASTG 2 cut(s) 394, 493
VpaK11BI GGWCC 1 cut(s) 168
XapI RAATTY 1 cut(s) 194
XhoI CTCGAG 1 cut(s) 896
ZrmI AGTACT 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.