FvH4_7g14460

Cell division control protein 14, SIN component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0014509
Physical Location & Seq
Forward (+)
12798250 .. 12800095
1846 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g14460.t1

Sequence Viewer

Length: 900 bp
ATGTACTTGAAGAAGCCCCAATGGACGGAGGGAATCACACCCAAGCCTTCGCCGGAATCCCAATCAGACTCACCCTCCACCGCCGTCAGCGATCTGGTCAACTCCTTGACCACCCAGCGAGTCTACCGCGAAGTCACGCTCGCTCTCCGTACCGGCCTGACGGAGGTCCGCGCCGAGTTTTCCTTCCTCCGTGTCCGCGGCCTCCGCTCGCTCCTCAAGTTCCTCCGATCCGTCGCCGAGTCCGACTCCACCATCAACCTCTTCTCCCAGACCCAATCGATTCCGGAGCTTCAAGTGGTGCCGGTGCTGTTTCAACACTCGCTGAAAGAGGCGGAGGATGAGATCGTGAGGAATCTGGATCACATTTTCGGCGTGGAGCCACTGAAAATCACAGCTCCTTCGACTGATTCCGAAGTTTCGCTTGCGCTTCGGGTCTTGGAAGGGTGCTGTTTGCTTCATCGGGACAGCGCGGTGTTGGCTCACCAGCACAAGGCTATTCAGGTGTTGATGAATATATTGCCTAGTAGAGGAGTGGCGGAGCAGGGTGTGTGTTTGGATGCTTTGACTGCCATTATGTTGGATTCGTCGGATAATCAAATGGACTTTGAGGAACTTAATGGGATCGAGGAAGTTGCAGAGCTTATAAGAGATAAGCAGGTTGATGAGAATCTGAGGATGAAATGTGGAGAGTTCCTGCTGCTACTCATAGGTCATGTAAATGGGAGGGACAGACCCCCCTTGGCAACTGTACATGAAGACATAAGGCGACTTTTGGGTGAGAAATCTGCTTCCCTGATATGGGCAGCCAGTCAATTTGGCTCAACTCTTGATCCAGAGCAAAGACTAACTGCCCTTCATATCCAAGCTCGTCGTGTACTGGAGTCATTGGACCTATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDC14

Protein Analysis

300

Amino Acids

33.41

Weight (kDa)

5.27

Isoelectric Point (pI)

52.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDC14 PF08045 133 - 233 7.2e-12 Cell division control protein 14, SIN component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014509)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27750
fragaria_vesca FvH4_7g14460
malus_domestica MD01G1064000.v1.1 MD01G1064500.v1.1 MD07G1135900.v1.1
prunus_persica Prupe.2G171600_v2.0.a1
pyrus_communis pycom07g13330
rosa_chinensis RchiOBHm_Chr1g0355871
rosa_laevigata RLG00000028120
rosa_multiflora Rmu_sc0002284.1_g000020 Rmu_sc0004705.1_g000020
rosa_roxburghii Rroxscaffold_4G00299960
rosa_rugosa Rorug01G0248100
rosa_samantha Rh1AG261300 Rh1CG244400 Rh1DG258000
rosa_wichuraiana Rw1G023070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 644
Acc36I ACCTGC 1 cut(s) 646
AccB1I GGYRCC 1 cut(s) 298
AccBSI CCGCTC 1 cut(s) 207
AccI GTMKAC 1 cut(s) 123
AccII CGCG 4 cut(s) 129, 171, 198, 470
AccIII TCCGGA 1 cut(s) 283
AciI CCGC 9 cut(s) 81, 127, 169, 196, 198, 205, 332, 470, 536
AclWI GGATC 4 cut(s) 222, 366, 629, 824
AfaI GTAC 4 cut(s) 5, 151, 750, 876
AfiI CCNNNNNNNGG 6 cut(s) 25, 163, 490, 527, 798, 799
AgsI TTSAA 3 cut(s) 10, 293, 314
AluBI AGCT 4 cut(s) 289, 395, 640, 866
AluI AGCT 4 cut(s) 289, 395, 640, 866
AlwI GGATC 4 cut(s) 222, 366, 629, 824
Aor13HI TCCGGA 1 cut(s) 283
AoxI GGCC 2 cut(s) 154, 199
ApeKI GCWGC 2 cut(s) 697, 803
AspLEI GCGC 3 cut(s) 173, 427, 470
AspS9I GGNCC 2 cut(s) 166, 889
AsuHPI GGTGA 3 cut(s) 63, 473, 788
AvaII GGWCC 2 cut(s) 166, 889
BanI GGYRCC 1 cut(s) 298
BbsI GAAGAC 1 cut(s) 762
BbvI GCAGC 2 cut(s) 684, 815
BccI CCATC 1 cut(s) 260
BceAI ACGGC 1 cut(s) 68
BcgI CGANNNNNNTGC 2 cut(s) 614, 648
BfaI CTAG 1 cut(s) 522
BfuAI ACCTGC 1 cut(s) 646
BisI GCNGC 3 cut(s) 199, 698, 804
BlsI GCNGC 3 cut(s) 200, 699, 805
Bme18I GGWCC 2 cut(s) 166, 889
BmgT120I GGNCC 2 cut(s) 166, 889
BmiI GGNNCC 2 cut(s) 300, 378
BmsI GCATC 1 cut(s) 547
BoxI GACNNNNGTC 1 cut(s) 164
BpiI GAAGAC 1 cut(s) 762
BplI GAGNNNNNCTC 2 cut(s) 230, 262
BpmI CTGGAG 1 cut(s) 899
BpuEI CTTGAG 1 cut(s) 200
Bsa29I ATCGAT 1 cut(s) 278
BsaBI GATNNNNATC 1 cut(s) 666
BsaJI CCNNGG 2 cut(s) 196, 738
BsaWI WCCGGW 1 cut(s) 283
BsaXI ACNNNNNCTCC 4 cut(s) 59, 89, 248, 278
Bsc4I CCNNNNNNNGG 6 cut(s) 25, 163, 490, 527, 798, 799
Bse118I RCCGGY 2 cut(s) 152, 301
Bse1I ACTGG 2 cut(s) 807, 882
Bse8I GATNNNNATC 1 cut(s) 666
BseAI TCCGGA 1 cut(s) 283
BseCI ATCGAT 1 cut(s) 278
BseDI CCNNGG 2 cut(s) 196, 738
BseGI GGATG 3 cut(s) 343, 562, 681
BseJI GATNNNNATC 1 cut(s) 666
BseLI CCNNNNNNNGG 6 cut(s) 25, 163, 490, 527, 798, 799
BseMII CTCAG 1 cut(s) 662
BseNI ACTGG 2 cut(s) 807, 882
BseRI GAGGAG 2 cut(s) 203, 543
BseXI GCAGC 2 cut(s) 684, 815
BseYI CCCAGC 1 cut(s) 114
Bsh1236I CGCG 4 cut(s) 129, 171, 198, 470
BshFI GGCC 2 cut(s) 156, 201
BshNI GGYRCC 1 cut(s) 298
BshVI ATCGAT 1 cut(s) 278
BsiSI CCGG 4 cut(s) 53, 153, 284, 302
BslFI GGGAC 2 cut(s) 476, 740
BslI CCNNNNNNNGG 6 cut(s) 25, 163, 490, 527, 798, 799
BsmFI GGGAC 2 cut(s) 476, 740
BsnI GGCC 2 cut(s) 156, 201
Bsp13I TCCGGA 1 cut(s) 283
Bsp1407I TGTACA 1 cut(s) 748
Bsp143I GATC 6 cut(s) 91, 227, 342, 358, 621, 829
BspACI CCGC 9 cut(s) 81, 127, 169, 196, 198, 205, 332, 470, 536
BspANI GGCC 2 cut(s) 156, 201
BspCNI CTCAG 1 cut(s) 663
BspDI ATCGAT 1 cut(s) 278
BspEI TCCGGA 1 cut(s) 283
BspFNI CGCG 4 cut(s) 129, 171, 198, 470
BspLI GGNNCC 2 cut(s) 300, 378
BspMI ACCTGC 1 cut(s) 646
BspPI GGATC 4 cut(s) 222, 366, 629, 824
BspT107I GGYRCC 1 cut(s) 298
BsrBI CCGCTC 1 cut(s) 207
BsrFI RCCGGY 2 cut(s) 152, 301
BsrGI TGTACA 1 cut(s) 748
BsrI ACTGG 2 cut(s) 807, 882
BssAI RCCGGY 2 cut(s) 152, 301
BssECI CCNNGG 2 cut(s) 196, 738
BssMI GATC 6 cut(s) 91, 227, 342, 358, 621, 829
BssT1I CCWWGG 1 cut(s) 738
Bst4CI ACNGT 1 cut(s) 748
Bst6I CTCTTC 1 cut(s) 266
BstAUI TGTACA 1 cut(s) 748
BstC8I GCNNGC 3 cut(s) 141, 209, 423
BstDEI CTNAG 1 cut(s) 671
BstDSI CCRYGG 1 cut(s) 196
BstENI CCTNNNNNAGG 2 cut(s) 161, 525
BstF5I GGATG 3 cut(s) 343, 562, 681
BstFNI CGCG 4 cut(s) 129, 171, 198, 470
BstHHI GCGC 3 cut(s) 173, 427, 470
BstKTI GATC 6 cut(s) 94, 230, 345, 361, 624, 832
BstMBI GATC 6 cut(s) 91, 227, 342, 358, 621, 829
BstMWI GCNNNNNNNGC 3 cut(s) 204, 476, 566
BstPAI GACNNNNGTC 1 cut(s) 164
BstUI CGCG 4 cut(s) 129, 171, 198, 470
BstV1I GCAGC 2 cut(s) 684, 815
BstV2I GAAGAC 1 cut(s) 762
BstXI CCANNNNNNTGG 1 cut(s) 577
Bsu15I ATCGAT 1 cut(s) 278
BsuRI GGCC 2 cut(s) 156, 201
BsuTUI ATCGAT 1 cut(s) 278
BtgI CCRYGG 1 cut(s) 196
BtsCI GGATG 3 cut(s) 343, 562, 681
BtsIMutI CAGTG 1 cut(s) 380
BveI ACCTGC 1 cut(s) 646
Cac8I GCNNGC 3 cut(s) 141, 209, 423
CfoI GCGC 3 cut(s) 173, 427, 470
Cfr10I RCCGGY 2 cut(s) 152, 301
Cfr13I GGNCC 2 cut(s) 166, 889
Cfr42I CCGCGG 1 cut(s) 199
ClaI ATCGAT 1 cut(s) 278
Csp6I GTAC 4 cut(s) 4, 150, 749, 875
CviAII CATG 2 cut(s) 713, 752
CviQI GTAC 4 cut(s) 4, 150, 749, 875
DdeI CTNAG 1 cut(s) 671
DpnI GATC 6 cut(s) 93, 229, 344, 360, 623, 831
DpnII GATC 6 cut(s) 91, 227, 342, 358, 621, 829
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
EciI GGCGGA 2 cut(s) 347, 551
Eco130I CCWWGG 1 cut(s) 738
Eco47I GGWCC 2 cut(s) 166, 889
EcoNI CCTNNNNNAGG 2 cut(s) 161, 525
EcoT14I CCWWGG 1 cut(s) 738
ErhI CCWWGG 1 cut(s) 738
FaeI CATG 2 cut(s) 716, 755
FalI AAGNNNNNCTT 2 cut(s) 405, 437
FaqI GGGAC 2 cut(s) 476, 740
FatI CATG 2 cut(s) 712, 751
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 3 cut(s) 199, 698, 804
FokI GGATG 3 cut(s) 350, 569, 688
Fsp4HI GCNGC 3 cut(s) 199, 698, 804
FspBI CTAG 1 cut(s) 522
GlaI GCGC 3 cut(s) 172, 426, 469
GluI GCNGC 3 cut(s) 199, 698, 804
GsaI CCCAGC 1 cut(s) 118
GsuI CTGGAG 1 cut(s) 899
HaeIII GGCC 2 cut(s) 156, 201
HapII CCGG 4 cut(s) 53, 153, 284, 302
HhaI GCGC 3 cut(s) 173, 427, 470
Hin1II CATG 2 cut(s) 716, 755
Hin6I GCGC 3 cut(s) 171, 425, 468
HinP1I GCGC 3 cut(s) 171, 425, 468
HincII GTYRAC 1 cut(s) 100
HindII GTYRAC 1 cut(s) 100
HpaII CCGG 4 cut(s) 53, 153, 284, 302
HphI GGTGA 3 cut(s) 63, 473, 788
Hpy166II GTNNAC 3 cut(s) 100, 124, 875
Hpy188I TCNGA 6 cut(s) 67, 227, 244, 412, 589, 672
Hpy188III TCNNGA 6 cut(s) 284, 346, 356, 461, 827, 833
Hpy8I GTNNAC 3 cut(s) 100, 124, 875
Hpy99I CGWCG 3 cut(s) 236, 589, 873
HpyAV CCTTC 5 cut(s) 57, 193, 408, 434, 863
HpyCH4III ACNGT 1 cut(s) 748
HpyCH4V TGCA 1 cut(s) 635
HpyF10VI GCNNNNNNNGC 3 cut(s) 204, 476, 566
HpyF3I CTNAG 1 cut(s) 671
Hsp92II CATG 2 cut(s) 716, 755
HspAI GCGC 3 cut(s) 171, 425, 468
Kpn2I TCCGGA 1 cut(s) 283
KspI CCGCGG 1 cut(s) 199
Kzo9I GATC 6 cut(s) 91, 227, 342, 358, 621, 829
LmnI GCTCC 5 cut(s) 216, 286, 376, 400, 538
Lsp1109I GCAGC 2 cut(s) 684, 815
LweI GCATC 1 cut(s) 547
MaeI CTAG 1 cut(s) 522
MaeIII GTNAC 1 cut(s) 133
MalI GATC 6 cut(s) 93, 229, 344, 360, 623, 831
MbiI CCGCTC 1 cut(s) 207
MboI GATC 6 cut(s) 91, 227, 342, 358, 621, 829
MboII GAAGA 3 cut(s) 22, 253, 767
MluCI AATT 1 cut(s) 812
MlyI GAGTC 5 cut(s) 62, 129, 239, 248, 890
MmeI TCCRAC 3 cut(s) 267, 558, 567
MroI TCCGGA 1 cut(s) 283
MseI TTAA 1 cut(s) 615
MslI CAYNNNNRTG 1 cut(s) 717
MspA1I CMGCKG 1 cut(s) 198
MspI CCGG 4 cut(s) 53, 153, 284, 302
MvnI CGCG 4 cut(s) 129, 171, 198, 470
MwoI GCNNNNNNNGC 3 cut(s) 204, 476, 566
NdeII GATC 6 cut(s) 91, 227, 342, 358, 621, 829
NlaIII CATG 2 cut(s) 716, 755
NlaIV GGNNCC 2 cut(s) 300, 378
NmeAIII GCCGAG 2 cut(s) 199, 262
NmuCI GTSAC 1 cut(s) 133
PcsI WCGNNNNNNNCGW 1 cut(s) 240
PfeI GAWTC 7 cut(s) 33, 56, 280, 352, 407, 581, 667
PkrI GCNGC 3 cut(s) 200, 699, 805
PleI GAGTC 5 cut(s) 62, 128, 239, 247, 889
PpsI GAGTC 5 cut(s) 62, 128, 239, 247, 889
PshAI GACNNNNGTC 1 cut(s) 164
PsiI TTATAA 1 cut(s) 644
PspFI CCCAGC 1 cut(s) 114
PspN4I GGNNCC 2 cut(s) 300, 378
PspPI GGNCC 2 cut(s) 166, 889
RsaI GTAC 4 cut(s) 5, 151, 750, 876
RsaNI GTAC 4 cut(s) 4, 150, 749, 875
RseI CAYNNNNRTG 1 cut(s) 717
SacII CCGCGG 1 cut(s) 199
SaqAI TTAA 1 cut(s) 615
SatI GCNGC 3 cut(s) 199, 698, 804
Sau3AI GATC 6 cut(s) 91, 227, 342, 358, 621, 829
Sau96I GGNCC 2 cut(s) 166, 889
SchI GAGTC 5 cut(s) 62, 129, 239, 248, 890
SfaNI GCATC 1 cut(s) 547
Sfr303I CCGCGG 1 cut(s) 199
SgrBI CCGCGG 1 cut(s) 199
SinI GGWCC 2 cut(s) 166, 889
SmiMI CAYNNNNRTG 1 cut(s) 717
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 1 cut(s) 812
SsiI CCGC 9 cut(s) 81, 127, 169, 196, 198, 205, 332, 470, 536
SspMI CTAG 1 cut(s) 522
StyI CCWWGG 1 cut(s) 738
TaaI ACNGT 1 cut(s) 748
TaqI TCGA 3 cut(s) 278, 401, 624
TasI AATT 1 cut(s) 812
TatI WGTACW 3 cut(s) 3, 748, 874
TauI GCSGC 1 cut(s) 201
TfiI GAWTC 7 cut(s) 33, 56, 280, 352, 407, 581, 667
Tru1I TTAA 1 cut(s) 615
Tru9I TTAA 1 cut(s) 615
TscAI CASTG 1 cut(s) 387
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 2 cut(s) 697, 803
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 5 cut(s) 446, 524, 692, 768, 845
TspGWI ACGGA 5 cut(s) 41, 137, 176, 179, 220
TspRI CASTG 1 cut(s) 387
VpaK11BI GGWCC 2 cut(s) 166, 889
XagI CCTNNNNNAGG 2 cut(s) 161, 525
XmiI GTMKAC 1 cut(s) 123
XspI CTAG 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.