MD01G1064500.v1.1

Cell division control protein 14, SIN component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0014509
Physical Location & Seq
Forward (+)
16835301 .. 16837338
2038 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1064500.v1.1.491

Sequence Viewer

Length: 609 bp
ATGCTCGCGCTCCGGAGAGGCCTCCGCGATGTTCGCGCCGAGTTCTCCTTCCTCCGTGTCCGCGGCCTCCTCAAGTTCCTCCGATCGGTCGCCGAGTCCGATTCCATCATCAACCTCTTCTCTCAGACACAATCGCTTCCTGAGCTTCAAGTCGTGCCGGTTCTGTTTCGGCACTCGCTGAACGATTCGGACGATGAGATCGTACGGAATTTGGATCACATATTCGGCGTCGAGCCGCTGAAGATCACAAGCCCTTCAACCGATTCCGAGGTTTCGCTTGCGCTTAGGGTTTTGGAGGGTTGCTGCCTGCTTCATCCGGACAGCGCGGTTTTGGCTCATCAGCACAAGGCCATTCAGGTTTTGATGAATATATTACCGACTTGCGGCGTGATTGAGCAAGGAGCTTGTTTGGATGCTTTGATTGCTATTATGTTGGATTCATCAGCTAATCAAATGGATTTTGAGGCTTTTCATGGTATTGAGGAAGTTGCAGGGCTCAAAAGGGACAAACAAGTTGATGAGAATCTCAGGTTGAAATGTGGAGAGTTCTTGCTGCTTTTGATTGGTCATGTAAATGGGAGGGATAGGCCACCGTTGGCAATTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDC14

Protein Analysis

203

Amino Acids

22.41

Weight (kDa)

5.47

Isoelectric Point (pI)

55.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDC14 PF08045 83 - 185 1.1e-12 Cell division control protein 14, SIN component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014509)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27750
fragaria_vesca FvH4_7g14460
malus_domestica MD01G1064000.v1.1 MD01G1064500.v1.1 MD07G1135900.v1.1
prunus_persica Prupe.2G171600_v2.0.a1
pyrus_communis pycom07g13330
rosa_chinensis RchiOBHm_Chr1g0355871
rosa_laevigata RLG00000028120
rosa_multiflora Rmu_sc0002284.1_g000020 Rmu_sc0004705.1_g000020
rosa_roxburghii Rroxscaffold_4G00299960
rosa_rugosa Rorug01G0248100
rosa_samantha Rh1AG261300 Rh1CG244400 Rh1DG258000
rosa_wichuraiana Rw1G023070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 5 cut(s) 8, 27, 36, 63, 326
AccIII TCCGGA 2 cut(s) 12, 316
AciI CCGC 6 cut(s) 25, 61, 63, 236, 326, 384
AclWI GGATC 1 cut(s) 222
AcsI RAATTY 1 cut(s) 208
AcuI CTGAAG 1 cut(s) 260
AcyI GRCGYC 1 cut(s) 228
AfaI GTAC 1 cut(s) 204
AfiI CCNNNNNNNGG 2 cut(s) 85, 383
AgsI TTSAA 3 cut(s) 149, 258, 535
AluBI AGCT 3 cut(s) 145, 404, 446
AluI AGCT 3 cut(s) 145, 404, 446
AlwI GGATC 1 cut(s) 222
Aor13HI TCCGGA 2 cut(s) 12, 316
AoxI GGCC 4 cut(s) 19, 64, 348, 587
ApeKI GCWGC 2 cut(s) 303, 553
ApoI RAATTY 1 cut(s) 208
AspLEI GCGC 4 cut(s) 10, 38, 283, 326
BanII GRGCYC 1 cut(s) 498
BbvI GCAGC 2 cut(s) 290, 540
BccI CCATC 1 cut(s) 113
BisI GCNGC 5 cut(s) 64, 236, 304, 385, 554
BlsI GCNGC 5 cut(s) 65, 237, 305, 386, 555
BmsI GCATC 1 cut(s) 403
Bpu10I CCTNAGC 2 cut(s) 141, 284
BpuEI CTTGAG 1 cut(s) 56
BsaBI GATNNNNATC 1 cut(s) 522
BsaHI GRCGYC 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 61, 267
BsaWI WCCGGW 2 cut(s) 12, 316
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 383
Bse118I RCCGGY 1 cut(s) 157
Bse8I GATNNNNATC 1 cut(s) 522
BseAI TCCGGA 2 cut(s) 12, 316
BseDI CCNNGG 2 cut(s) 61, 267
BseGI GGATG 2 cut(s) 313, 418
BseJI GATNNNNATC 1 cut(s) 522
BseLI CCNNNNNNNGG 2 cut(s) 85, 383
BseMII CTCAG 3 cut(s) 132, 137, 541
BseRI GAGGAG 1 cut(s) 59
BseXI GCAGC 2 cut(s) 290, 540
Bsh1236I CGCG 5 cut(s) 8, 27, 36, 63, 326
Bsh1285I CGRYCG 2 cut(s) 86, 90
BshFI GGCC 4 cut(s) 21, 66, 350, 589
BsiEI CGRYCG 2 cut(s) 86, 90
BsiSI CCGG 3 cut(s) 13, 158, 317
BsiWI CGTACG 1 cut(s) 202
BslFI GGGAC 1 cut(s) 518
BslI CCNNNNNNNGG 2 cut(s) 85, 383
BsmFI GGGAC 1 cut(s) 518
BsnI GGCC 4 cut(s) 21, 66, 350, 589
Bsp1286I GDGCHC 1 cut(s) 498
Bsp13I TCCGGA 2 cut(s) 12, 316
Bsp143I GATC 4 cut(s) 83, 198, 214, 243
BspACI CCGC 6 cut(s) 25, 61, 63, 236, 326, 384
BspANI GGCC 4 cut(s) 21, 66, 350, 589
BspCNI CTCAG 3 cut(s) 133, 136, 540
BspEI TCCGGA 2 cut(s) 12, 316
BspFNI CGCG 5 cut(s) 8, 27, 36, 63, 326
BspPI GGATC 1 cut(s) 222
BsrFI RCCGGY 1 cut(s) 157
BssAI RCCGGY 1 cut(s) 157
BssECI CCNNGG 2 cut(s) 61, 267
BssMI GATC 4 cut(s) 83, 198, 214, 243
BssNI GRCGYC 1 cut(s) 228
Bst4CI ACNGT 1 cut(s) 594
Bst6I CTCTTC 1 cut(s) 122
BstACI GRCGYC 1 cut(s) 228
BstC8I GCNNGC 3 cut(s) 6, 279, 308
BstDEI CTNAG 4 cut(s) 123, 141, 284, 527
BstDSI CCRYGG 1 cut(s) 61
BstF5I GGATG 2 cut(s) 313, 418
BstFNI CGCG 5 cut(s) 8, 27, 36, 63, 326
BstHHI GCGC 4 cut(s) 10, 38, 283, 326
BstKTI GATC 4 cut(s) 86, 201, 217, 246
BstMBI GATC 4 cut(s) 83, 198, 214, 243
BstMCI CGRYCG 2 cut(s) 86, 90
BstMWI GCNNNNNNNGC 4 cut(s) 33, 142, 332, 422
BstUI CGCG 5 cut(s) 8, 27, 36, 63, 326
BstV1I GCAGC 2 cut(s) 290, 540
BsuRI GGCC 4 cut(s) 21, 66, 350, 589
BtgI CCRYGG 1 cut(s) 61
BtgZI GCGATG 1 cut(s) 42
BtsCI GGATG 2 cut(s) 313, 418
Cac8I GCNNGC 3 cut(s) 6, 279, 308
CfoI GCGC 4 cut(s) 10, 38, 283, 326
Cfr10I RCCGGY 1 cut(s) 157
Cfr42I CCGCGG 1 cut(s) 64
CseI GACGC 1 cut(s) 217
Csp6I GTAC 1 cut(s) 203
CviAII CATG 3 cut(s) 473, 569, 606
CviQI GTAC 1 cut(s) 203
DdeI CTNAG 4 cut(s) 123, 141, 284, 527
DpnI GATC 4 cut(s) 85, 200, 216, 245
DpnII GATC 4 cut(s) 83, 198, 214, 243
Eam1104I CTCTTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 122
Eco147I AGGCCT 1 cut(s) 21
Eco24I GRGCYC 1 cut(s) 498
Eco57I CTGAAG 1 cut(s) 260
EcoT38I GRGCYC 1 cut(s) 498
FaeI CATG 3 cut(s) 476, 572, 609
FaiI YATR 6 cut(s) 221, 371, 431, 474, 570, 607
FaqI GGGAC 1 cut(s) 518
FatI CATG 3 cut(s) 472, 568, 605
Fnu4HI GCNGC 5 cut(s) 64, 236, 304, 385, 554
FokI GGATG 2 cut(s) 300, 425
FriOI GRGCYC 1 cut(s) 498
Fsp4HI GCNGC 5 cut(s) 64, 236, 304, 385, 554
GlaI GCGC 4 cut(s) 9, 37, 282, 325
GluI GCNGC 5 cut(s) 64, 236, 304, 385, 554
HaeIII GGCC 4 cut(s) 21, 66, 350, 589
HapII CCGG 3 cut(s) 13, 158, 317
HgaI GACGC 1 cut(s) 217
HhaI GCGC 4 cut(s) 10, 38, 283, 326
Hin1I GRCGYC 1 cut(s) 228
Hin1II CATG 3 cut(s) 476, 572, 609
Hin6I GCGC 4 cut(s) 8, 36, 281, 324
HinP1I GCGC 4 cut(s) 8, 36, 281, 324
HinfI GANTC 6 cut(s) 95, 101, 185, 263, 437, 523
HpaII CCGG 3 cut(s) 13, 158, 317
Hpy188I TCNGA 5 cut(s) 83, 100, 126, 190, 268
Hpy188III TCNNGA 3 cut(s) 13, 140, 317
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 2 cut(s) 58, 264
HpyCH4III ACNGT 1 cut(s) 594
HpyCH4V TGCA 1 cut(s) 491
HpyF10VI GCNNNNNNNGC 4 cut(s) 33, 142, 332, 422
HpyF3I CTNAG 4 cut(s) 123, 141, 284, 527
Hsp92I GRCGYC 1 cut(s) 228
Hsp92II CATG 3 cut(s) 476, 572, 609
HspAI GCGC 4 cut(s) 8, 36, 281, 324
Kpn2I TCCGGA 2 cut(s) 12, 316
KspI CCGCGG 1 cut(s) 64
Kzo9I GATC 4 cut(s) 83, 198, 214, 243
LmnI GCTCC 2 cut(s) 15, 401
LpnPI CCDG 8 cut(s) 26, 153, 171, 320, 330, 341, 477, 514
Lsp1109I GCAGC 2 cut(s) 290, 540
LweI GCATC 1 cut(s) 403
MalI GATC 4 cut(s) 85, 200, 216, 245
MboI GATC 4 cut(s) 83, 198, 214, 243
MboII GAAGA 2 cut(s) 109, 253
MhlI GDGCHC 1 cut(s) 498
MluCI AATT 2 cut(s) 208, 600
MlyI GAGTC 1 cut(s) 104
MmeI TCCRAC 1 cut(s) 414
MroI TCCGGA 2 cut(s) 12, 316
MslI CAYNNNNRTG 1 cut(s) 573
MspA1I CMGCKG 2 cut(s) 63, 238
MspI CCGG 3 cut(s) 13, 158, 317
MvnI CGCG 5 cut(s) 8, 27, 36, 63, 326
MwoI GCNNNNNNNGC 4 cut(s) 33, 142, 332, 422
NdeII GATC 4 cut(s) 83, 198, 214, 243
NlaIII CATG 3 cut(s) 476, 572, 609
NmeAIII GCCGAG 2 cut(s) 64, 118
PceI AGGCCT 1 cut(s) 21
PcsI WCGNNNNNNNCGW 3 cut(s) 96, 189, 198
PfeI GAWTC 5 cut(s) 101, 185, 263, 437, 523
Pfl23II CGTACG 1 cut(s) 202
PkrI GCNGC 5 cut(s) 65, 237, 305, 386, 555
Ple19I CGATCG 1 cut(s) 86
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
PspLI CGTACG 1 cut(s) 202
PvuI CGATCG 1 cut(s) 86
RsaI GTAC 1 cut(s) 204
RsaNI GTAC 1 cut(s) 203
RseI CAYNNNNRTG 1 cut(s) 573
SacII CCGCGG 1 cut(s) 64
SatI GCNGC 5 cut(s) 64, 236, 304, 385, 554
Sau3AI GATC 4 cut(s) 83, 198, 214, 243
SchI GAGTC 1 cut(s) 104
SduI GDGCHC 1 cut(s) 498
SetI ASST 7 cut(s) 117, 147, 273, 360, 406, 448, 533
SfaNI GCATC 1 cut(s) 403
Sfr303I CCGCGG 1 cut(s) 64
SgrBI CCGCGG 1 cut(s) 64
SmiMI CAYNNNNRTG 1 cut(s) 573
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
Sse9I AATT 2 cut(s) 208, 600
SseBI AGGCCT 1 cut(s) 21
SsiI CCGC 6 cut(s) 25, 61, 63, 236, 326, 384
StuI AGGCCT 1 cut(s) 21
TaaI ACNGT 1 cut(s) 594
TaqI TCGA 1 cut(s) 231
TaqII GACCGA 1 cut(s) 76
TasI AATT 2 cut(s) 208, 600
TauI GCSGC 3 cut(s) 66, 238, 387
TfiI GAWTC 5 cut(s) 101, 185, 263, 437, 523
TseI GCWGC 2 cut(s) 303, 553
TspDTI ATGAA 4 cut(s) 302, 380, 429, 461
TspGWI ACGGA 2 cut(s) 44, 220
XapI RAATTY 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.