Rh1AG261300

Cell division control protein 14, SIN component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0014509
Physical Location & Seq
Forward (+)
48384528 .. 48386052
1525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG261300.1

Sequence Viewer

Length: 636 bp
ATGGTTGGGATTTCATTTCTTTGGGTTCCAGTGGTGCCGGTTCTGTTTCAACACTCGCTGAAAGAGGCGGAGGATGAGATCGTGAGGAATTTGGATCACATTTTCGGCGTGGAGCCTCTGAAAATCACCACTCCTTCGACTGACTCGGAGATTTCGCTTGCGCTTCGGGTTTTGGAAGGGTGCTGTTTGCTTCATCGGGAAAGTGCCGTCTTGGCTCACCAGCACAAGGCTATTCAGGTGTTGATGAATATATTGCCTACTAGAGGAGTGGCTGAGCAGGGTGTGTGCTTGGATGCTTTGACTGCCATTATGTTGGATTCGTCAGCTAATCAAATGGACTTTGAGGCACTTAATGGTATCGAGGAAGTTGCTGAGCTTATAAGAGATAAGCAAGTTGATGAGAATCTCAGGTTGAAATGTGGAGAGTTCCTGCTGCTACTCATAGGGCATGTAAATGGGAGGGACAGGCCACCCTTGGCAACTGTACATGAAGACATAAAGCGACTTTTGGGTGAGAAATCTGCTTCCCTTATCTGGGCGGCCAGTCAATTTGGCTCAACTCTTGATCCGGAGCAAAGACTAACTGCCCTTCACATCCAAGCTCGTCGTGTACTGGAGTCATTGGACCTGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDC14

Protein Analysis

211

Amino Acids

23.46

Weight (kDa)

5.14

Isoelectric Point (pI)

42.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDC14 PF08045 43 - 145 1.5e-12 Cell division control protein 14, SIN component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014509)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27750
fragaria_vesca FvH4_7g14460
malus_domestica MD01G1064000.v1.1 MD01G1064500.v1.1 MD07G1135900.v1.1
prunus_persica Prupe.2G171600_v2.0.a1
pyrus_communis pycom07g13330
rosa_chinensis RchiOBHm_Chr1g0355871
rosa_laevigata RLG00000028120
rosa_multiflora Rmu_sc0002284.1_g000020 Rmu_sc0004705.1_g000020
rosa_roxburghii Rroxscaffold_4G00299960
rosa_rugosa Rorug01G0248100
rosa_samantha Rh1AG261300 Rh1CG244400 Rh1DG258000
rosa_wichuraiana Rw1G023070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 380
AccB1I GGYRCC 1 cut(s) 34
AccIII TCCGGA 1 cut(s) 568
AciI CCGC 2 cut(s) 68, 539
AclWI GGATC 2 cut(s) 102, 560
AcoI YGGCCR 1 cut(s) 540
AcsI RAATTY 1 cut(s) 88
AfaI GTAC 3 cut(s) 486, 612, 632
AfiI CCNNNNNNNGG 4 cut(s) 226, 263, 534, 535
AgsI TTSAA 2 cut(s) 50, 415
AluBI AGCT 3 cut(s) 326, 376, 602
AluI AGCT 3 cut(s) 326, 376, 602
AlwI GGATC 2 cut(s) 102, 560
Aor13HI TCCGGA 1 cut(s) 568
AoxI GGCC 2 cut(s) 467, 540
ApeKI GCWGC 1 cut(s) 433
ApoI RAATTY 1 cut(s) 88
AspLEI GCGC 1 cut(s) 163
AspS9I GGNCC 1 cut(s) 625
AsuHPI GGTGA 3 cut(s) 118, 209, 524
AvaII GGWCC 1 cut(s) 625
BanI GGYRCC 1 cut(s) 34
BbsI GAAGAC 1 cut(s) 498
BbvI GCAGC 1 cut(s) 420
BceAI ACGGC 1 cut(s) 191
BcgI CGANNNNNNTGC 2 cut(s) 350, 384
BfaI CTAG 1 cut(s) 261
BglI GCCNNNNNGGC 1 cut(s) 212
BisI GCNGC 2 cut(s) 434, 540
BlpI GCTNAGC 2 cut(s) 273, 372
BlsI GCNGC 2 cut(s) 435, 541
Bme18I GGWCC 1 cut(s) 625
BmgT120I GGNCC 1 cut(s) 625
BmiI GGNNCC 3 cut(s) 27, 36, 114
BmsI GCATC 1 cut(s) 283
BpiI GAAGAC 1 cut(s) 498
BpmI CTGGAG 1 cut(s) 635
Bpu1102I GCTNAGC 2 cut(s) 273, 372
BsaBI GATNNNNATC 1 cut(s) 402
BsaJI CCNNGG 1 cut(s) 474
BsaWI WCCGGW 1 cut(s) 568
Bsc4I CCNNNNNNNGG 4 cut(s) 226, 263, 534, 535
Bse118I RCCGGY 1 cut(s) 37
Bse1I ACTGG 3 cut(s) 29, 543, 618
Bse8I GATNNNNATC 1 cut(s) 402
BseAI TCCGGA 1 cut(s) 568
BseDI CCNNGG 1 cut(s) 474
BseGI GGATG 3 cut(s) 79, 298, 594
BseJI GATNNNNATC 1 cut(s) 402
BseLI CCNNNNNNNGG 4 cut(s) 226, 263, 534, 535
BseMII CTCAG 3 cut(s) 264, 363, 421
BseNI ACTGG 3 cut(s) 29, 543, 618
BseRI GAGGAG 1 cut(s) 279
BseXI GCAGC 1 cut(s) 420
BshFI GGCC 2 cut(s) 469, 542
BshNI GGYRCC 1 cut(s) 34
BsiSI CCGG 2 cut(s) 38, 569
BslFI GGGAC 1 cut(s) 476
BslI CCNNNNNNNGG 4 cut(s) 226, 263, 534, 535
BsmFI GGGAC 1 cut(s) 476
BsnI GGCC 2 cut(s) 469, 542
Bsp13I TCCGGA 1 cut(s) 568
Bsp1407I TGTACA 1 cut(s) 484
Bsp143I GATC 3 cut(s) 78, 94, 565
Bsp1720I GCTNAGC 2 cut(s) 273, 372
BspACI CCGC 2 cut(s) 68, 539
BspANI GGCC 2 cut(s) 469, 542
BspCNI CTCAG 3 cut(s) 265, 364, 420
BspEI TCCGGA 1 cut(s) 568
BspLI GGNNCC 3 cut(s) 27, 36, 114
BspPI GGATC 2 cut(s) 102, 560
BspT107I GGYRCC 1 cut(s) 34
BsrFI RCCGGY 1 cut(s) 37
BsrGI TGTACA 1 cut(s) 484
BsrI ACTGG 3 cut(s) 29, 543, 618
BssAI RCCGGY 1 cut(s) 37
BssECI CCNNGG 1 cut(s) 474
BssMI GATC 3 cut(s) 78, 94, 565
BssT1I CCWWGG 1 cut(s) 474
Bst4CI ACNGT 1 cut(s) 484
BstAUI TGTACA 1 cut(s) 484
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 3 cut(s) 273, 372, 407
BstENI CCTNNNNNAGG 1 cut(s) 261
BstF5I GGATG 3 cut(s) 79, 298, 594
BstHHI GCGC 1 cut(s) 163
BstKTI GATC 3 cut(s) 81, 97, 568
BstMBI GATC 3 cut(s) 78, 94, 565
BstMWI GCNNNNNNNGC 2 cut(s) 212, 302
BstNSI RCATGY 1 cut(s) 452
BstV1I GCAGC 1 cut(s) 420
BstV2I GAAGAC 1 cut(s) 498
BstXI CCANNNNNNTGG 1 cut(s) 313
BsuRI GGCC 2 cut(s) 469, 542
BtsCI GGATG 3 cut(s) 79, 298, 594
BtsIMutI CAGTG 1 cut(s) 36
Cac8I GCNNGC 1 cut(s) 159
CfoI GCGC 1 cut(s) 163
Cfr10I RCCGGY 1 cut(s) 37
Cfr13I GGNCC 1 cut(s) 625
Csp6I GTAC 3 cut(s) 485, 611, 631
CviAII CATG 2 cut(s) 449, 488
CviQI GTAC 3 cut(s) 485, 611, 631
DdeI CTNAG 3 cut(s) 273, 372, 407
DpnI GATC 3 cut(s) 80, 96, 567
DpnII GATC 3 cut(s) 78, 94, 565
EaeI YGGCCR 1 cut(s) 540
EciI GGCGGA 1 cut(s) 83
Eco130I CCWWGG 1 cut(s) 474
Eco47I GGWCC 1 cut(s) 625
EcoNI CCTNNNNNAGG 1 cut(s) 261
EcoT14I CCWWGG 1 cut(s) 474
ErhI CCWWGG 1 cut(s) 474
FaeI CATG 2 cut(s) 452, 491
FaiI YATR 7 cut(s) 251, 311, 380, 443, 450, 489, 497
FaqI GGGAC 1 cut(s) 476
FatI CATG 2 cut(s) 448, 487
Fnu4HI GCNGC 2 cut(s) 434, 540
FokI GGATG 3 cut(s) 86, 305, 581
Fsp4HI GCNGC 2 cut(s) 434, 540
FspBI CTAG 1 cut(s) 261
GlaI GCGC 1 cut(s) 162
GluI GCNGC 2 cut(s) 434, 540
GsuI CTGGAG 1 cut(s) 635
HaeIII GGCC 2 cut(s) 469, 542
HapII CCGG 2 cut(s) 38, 569
HhaI GCGC 1 cut(s) 163
Hin1II CATG 2 cut(s) 452, 491
Hin6I GCGC 1 cut(s) 161
HinP1I GCGC 1 cut(s) 161
HinfI GANTC 4 cut(s) 143, 317, 403, 617
HpaII CCGG 2 cut(s) 38, 569
HphI GGTGA 3 cut(s) 118, 209, 524
Hpy166II GTNNAC 1 cut(s) 611
Hpy188I TCNGA 2 cut(s) 120, 148
Hpy188III TCNNGA 4 cut(s) 82, 197, 563, 569
Hpy8I GTNNAC 1 cut(s) 611
Hpy99I CGWCG 1 cut(s) 609
HpyAV CCTTC 3 cut(s) 144, 170, 599
HpyCH4III ACNGT 1 cut(s) 484
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 302
HpyF3I CTNAG 3 cut(s) 273, 372, 407
Hsp92II CATG 2 cut(s) 452, 491
HspAI GCGC 1 cut(s) 161
Kpn2I TCCGGA 1 cut(s) 568
Kzo9I GATC 3 cut(s) 78, 94, 565
LmnI GCTCC 2 cut(s) 112, 571
Lsp1109I GCAGC 1 cut(s) 420
LweI GCATC 1 cut(s) 283
MaeI CTAG 1 cut(s) 261
MalI GATC 3 cut(s) 80, 96, 567
MboI GATC 3 cut(s) 78, 94, 565
MboII GAAGA 1 cut(s) 503
MluCI AATT 2 cut(s) 88, 548
MlyI GAGTC 2 cut(s) 137, 626
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 8 cut(s) 58, 64, 78, 126, 257, 337, 355, 453
MroI TCCGGA 1 cut(s) 568
MseI TTAA 1 cut(s) 351
MslI CAYNNNNRTG 1 cut(s) 453
MspI CCGG 2 cut(s) 38, 569
MwoI GCNNNNNNNGC 2 cut(s) 212, 302
NdeII GATC 3 cut(s) 78, 94, 565
NlaIII CATG 2 cut(s) 452, 491
NlaIV GGNNCC 3 cut(s) 27, 36, 114
NspI RCATGY 1 cut(s) 452
PfeI GAWTC 2 cut(s) 317, 403
PkrI GCNGC 2 cut(s) 435, 541
PleI GAGTC 2 cut(s) 137, 625
PpsI GAGTC 2 cut(s) 137, 625
PsiI TTATAA 1 cut(s) 380
PspN4I GGNNCC 3 cut(s) 27, 36, 114
PspPI GGNCC 1 cut(s) 625
RsaI GTAC 3 cut(s) 486, 612, 632
RsaNI GTAC 3 cut(s) 485, 611, 631
RseI CAYNNNNRTG 1 cut(s) 453
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 2 cut(s) 434, 540
Sau3AI GATC 3 cut(s) 78, 94, 565
Sau96I GGNCC 1 cut(s) 625
SchI GAGTC 2 cut(s) 137, 626
SetI ASST 6 cut(s) 240, 328, 378, 413, 604, 630
SfaNI GCATC 1 cut(s) 283
SinI GGWCC 1 cut(s) 625
SmiMI CAYNNNNRTG 1 cut(s) 453
Sse9I AATT 2 cut(s) 88, 548
SsiI CCGC 2 cut(s) 68, 539
SspMI CTAG 1 cut(s) 261
StyI CCWWGG 1 cut(s) 474
TaaI ACNGT 1 cut(s) 484
TaqI TCGA 2 cut(s) 137, 360
TasI AATT 2 cut(s) 88, 548
TatI WGTACW 3 cut(s) 484, 610, 630
TauI GCSGC 1 cut(s) 542
TfiI GAWTC 2 cut(s) 317, 403
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TscAI CASTG 1 cut(s) 36
TseI GCWGC 1 cut(s) 433
TspDTI ATGAA 3 cut(s) 182, 260, 504
TspRI CASTG 1 cut(s) 36
VpaK11BI GGWCC 1 cut(s) 625
XagI CCTNNNNNAGG 1 cut(s) 261
XapI RAATTY 1 cut(s) 88
XceI RCATGY 1 cut(s) 452
XspI CTAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.