Prupe.2G171600_v2.0.a1

Cell division control protein 14, SIN component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0014509
Physical Location & Seq
Forward (+)
21856068 .. 21858189
2122 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G171600.1

Sequence Viewer

Length: 903 bp
ATGTACTTGAAGAAGCCTCTATGGAGTGAGGGAACGACAACACCGAAGGCCTCGGCGGAATCCGATTCAAACCCTCCCGCGACCGCCGTCAGCGATTTGGTCAACTCGTTGACCACCCAGAGAGTGTACCGCGAGGTCACCCTCGCGCTCCGGAGCGGCCTGCGCGACGTTCGCGCCGAGTTCTCTTTCCTCCGAGTCCGCGGCCTCCGCAGCCTCCTCAAGTTCCTCCGATCAGTCGCCGAGTCCGATTCCACCATCAACCTCTTCTCTCAGACCCAATCGCTCCCTGAGCTTCAAGTGGTGCCGGTTCTGTTTCAAAACTCGCTGAAAGATGCGGAGGATGAGATCGTGCGAAATTTGGATCACATTTTCGGGGTCGAGCCTCTGAAGATCACGAGCCCTTCAAGCGACTCTGAGGTTTCGCTTGCGCTTCGAGTTTTGGAGGGCTGTTGTCTGCTTCATCCAGATAGCGCGGTCTTGGCTCATCAGCACAAGGCCATTCAGGTGTTGATGAATATACTGCCAACTCGAGGGGTGATTGAGCAAAGCGCTTGCTTGGATGCTTTGATTGCAATAATGTTGGATTCATCAGCTAATCAAATGGATTTTGAAGCGTTTCATGGTATTGAGGAAGTTGCAGAGCTCATTAGAGACAAGCAAGTTGATGAGAACCTCAGGTTGAAATGTGGAGAGTTCTTGCTACTGCTAATTGGGCATGTAAATGGGAGGGACAGGCCTCCCTTGGCAACTGTACATGAAGACATAAGGAGGCTTTTAGGTGAGAAATCTGCTTCCTTGATATGGGCAGCCAGTCAGTTTGGTTCAACTCTTGATCCGGAGCAGAGACTAACCGCACTTCACATCCAAGCTCGTCGCGTGATAGAGTCCTTGGACCTGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDC14

Protein Analysis

301

Amino Acids

33.34

Weight (kDa)

5.43

Isoelectric Point (pI)

54.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014509)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27750
fragaria_vesca FvH4_7g14460
malus_domestica MD01G1064000.v1.1 MD01G1064500.v1.1 MD07G1135900.v1.1
prunus_persica Prupe.2G171600_v2.0.a1
pyrus_communis pycom07g13330
rosa_chinensis RchiOBHm_Chr1g0355871
rosa_laevigata RLG00000028120
rosa_multiflora Rmu_sc0002284.1_g000020 Rmu_sc0004705.1_g000020
rosa_roxburghii Rroxscaffold_4G00299960
rosa_rugosa Rorug01G0248100
rosa_samantha Rh1AG261300 Rh1CG244400 Rh1DG258000
rosa_wichuraiana Rw1G023070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 301
AccBSI CCGCTC 1 cut(s) 156
AccII CGCG 8 cut(s) 80, 132, 146, 165, 174, 201, 473, 876
AccIII TCCGGA 2 cut(s) 150, 835
AclWI GGATC 2 cut(s) 369, 827
AcsI RAATTY 1 cut(s) 355
AcuI CTGAAG 1 cut(s) 407
AfaI GTAC 4 cut(s) 5, 128, 753, 899
AfeI AGCGCT 1 cut(s) 550
AfiI CCNNNNNNNGG 2 cut(s) 530, 801
AgsI TTSAA 8 cut(s) 10, 69, 296, 317, 405, 611, 682, 825
AluBI AGCT 4 cut(s) 292, 593, 643, 869
AluI AGCT 4 cut(s) 292, 593, 643, 869
Alw21I GWGCWC 1 cut(s) 645
Alw26I GTCTC 2 cut(s) 645, 838
AlwI GGATC 2 cut(s) 369, 827
Ama87I CYCGRG 1 cut(s) 528
Aor13HI TCCGGA 2 cut(s) 150, 835
Aor51HI AGCGCT 1 cut(s) 550
AoxI GGCC 5 cut(s) 48, 157, 202, 495, 734
ApeKI GCWGC 2 cut(s) 210, 806
ApoI RAATTY 1 cut(s) 355
Asp700I GAANNNNTTC 1 cut(s) 615
AspLEI GCGC 6 cut(s) 148, 165, 176, 430, 473, 551
AspS9I GGNCC 1 cut(s) 892
AsuHPI GGTGA 3 cut(s) 130, 547, 791
AvaI CYCGRG 1 cut(s) 528
AvaII GGWCC 1 cut(s) 892
AxyI CCTNAGG 1 cut(s) 674
BanI GGYRCC 1 cut(s) 301
BanII GRGCYC 2 cut(s) 401, 645
BauI CACGAG 1 cut(s) 394
BbsI GAAGAC 1 cut(s) 765
Bbv12I GWGCWC 1 cut(s) 645
BbvI GCAGC 2 cut(s) 222, 818
BccI CCATC 1 cut(s) 263
BceAI ACGGC 1 cut(s) 71
BcoDI GTCTC 2 cut(s) 645, 838
BfoI RGCGCY 1 cut(s) 552
BisI GCNGC 4 cut(s) 157, 202, 211, 807
BlsI GCNGC 4 cut(s) 158, 203, 212, 808
Bme18I GGWCC 1 cut(s) 892
BmeT110I CYCGRG 1 cut(s) 528
BmgT120I GGNCC 1 cut(s) 892
BmiI GGNNCC 1 cut(s) 303
BmsI GCATC 2 cut(s) 322, 550
BoxI GACNNNNGTC 1 cut(s) 86
BpiI GAAGAC 1 cut(s) 765
Bpu10I CCTNAGC 1 cut(s) 288
BpuEI CTTGAG 1 cut(s) 203
BsaJI CCNNGG 4 cut(s) 51, 199, 741, 888
BsaWI WCCGGW 2 cut(s) 150, 835
Bsc4I CCNNNNNNNGG 2 cut(s) 530, 801
Bse118I RCCGGY 1 cut(s) 304
Bse1I ACTGG 1 cut(s) 810
Bse21I CCTNAGG 1 cut(s) 674
BseAI TCCGGA 2 cut(s) 150, 835
BseDI CCNNGG 4 cut(s) 51, 199, 741, 888
BseGI GGATG 4 cut(s) 346, 460, 565, 861
BseLI CCNNNNNNNGG 2 cut(s) 530, 801
BseMII CTCAG 4 cut(s) 279, 284, 405, 688
BseNI ACTGG 1 cut(s) 810
BseRI GAGGAG 1 cut(s) 206
BseXI GCAGC 2 cut(s) 222, 818
Bsh1236I CGCG 8 cut(s) 80, 132, 146, 165, 174, 201, 473, 876
Bsh1285I CGRYCG 1 cut(s) 84
BshFI GGCC 5 cut(s) 50, 159, 204, 497, 736
BshNI GGYRCC 1 cut(s) 301
BsiEI CGRYCG 1 cut(s) 84
BsiHKAI GWGCWC 1 cut(s) 645
BsiHKCI CYCGRG 1 cut(s) 528
BsiSI CCGG 3 cut(s) 151, 305, 836
BslFI GGGAC 1 cut(s) 743
BslI CCNNNNNNNGG 2 cut(s) 530, 801
BsmAI GTCTC 2 cut(s) 645, 838
BsmFI GGGAC 1 cut(s) 743
BsnI GGCC 5 cut(s) 50, 159, 204, 497, 736
BsoBI CYCGRG 1 cut(s) 528
Bsp1286I GDGCHC 2 cut(s) 401, 645
Bsp13I TCCGGA 2 cut(s) 150, 835
Bsp1407I TGTACA 1 cut(s) 751
Bsp143I GATC 5 cut(s) 230, 345, 361, 390, 832
BspANI GGCC 5 cut(s) 50, 159, 204, 497, 736
BspCNI CTCAG 4 cut(s) 280, 283, 406, 687
BspEI TCCGGA 2 cut(s) 150, 835
BspFNI CGCG 8 cut(s) 80, 132, 146, 165, 174, 201, 473, 876
BspLI GGNNCC 1 cut(s) 303
BspPI GGATC 2 cut(s) 369, 827
BspT107I GGYRCC 1 cut(s) 301
BsrBI CCGCTC 1 cut(s) 156
BsrFI RCCGGY 1 cut(s) 304
BsrGI TGTACA 1 cut(s) 751
BsrI ACTGG 1 cut(s) 810
BssAI RCCGGY 1 cut(s) 304
BssECI CCNNGG 4 cut(s) 51, 199, 741, 888
BssMI GATC 5 cut(s) 230, 345, 361, 390, 832
BssSI CACGAG 1 cut(s) 394
BssT1I CCWWGG 2 cut(s) 741, 888
Bst2BI CACGAG 1 cut(s) 394
Bst4CI ACNGT 1 cut(s) 751
Bst6I CTCTTC 1 cut(s) 269
BstAUI TGTACA 1 cut(s) 751
BstC8I GCNNGC 3 cut(s) 161, 426, 553
BstDEI CTNAG 4 cut(s) 270, 288, 414, 674
BstDSI CCRYGG 1 cut(s) 199
BstEII GGTNACC 1 cut(s) 136
BstF5I GGATG 4 cut(s) 346, 460, 565, 861
BstFNI CGCG 8 cut(s) 80, 132, 146, 165, 174, 201, 473, 876
BstH2I RGCGCY 1 cut(s) 552
BstHHI GCGC 6 cut(s) 148, 165, 176, 430, 473, 551
BstKTI GATC 5 cut(s) 233, 348, 364, 393, 835
BstMAI GTCTC 2 cut(s) 645, 838
BstMBI GATC 5 cut(s) 230, 345, 361, 390, 832
BstMCI CGRYCG 1 cut(s) 84
BstMWI GCNNNNNNNGC 9 cut(s) 162, 171, 207, 210, 289, 405, 479, 569, 712
BstNSI RCATGY 1 cut(s) 719
BstPAI GACNNNNGTC 1 cut(s) 86
BstPI GGTNACC 1 cut(s) 136
BstUI CGCG 8 cut(s) 80, 132, 146, 165, 174, 201, 473, 876
BstV1I GCAGC 2 cut(s) 222, 818
BstV2I GAAGAC 1 cut(s) 765
Bsu36I CCTNAGG 1 cut(s) 674
BsuRI GGCC 5 cut(s) 50, 159, 204, 497, 736
BtgI CCRYGG 1 cut(s) 199
BtsCI GGATG 4 cut(s) 346, 460, 565, 861
Cac8I GCNNGC 3 cut(s) 161, 426, 553
CfoI GCGC 6 cut(s) 148, 165, 176, 430, 473, 551
Cfr10I RCCGGY 1 cut(s) 304
Cfr13I GGNCC 1 cut(s) 892
Cfr42I CCGCGG 1 cut(s) 202
Csp6I GTAC 4 cut(s) 4, 127, 752, 898
CviAII CATG 3 cut(s) 620, 716, 755
CviQI GTAC 4 cut(s) 4, 127, 752, 898
DdeI CTNAG 4 cut(s) 270, 288, 414, 674
DpnI GATC 5 cut(s) 232, 347, 363, 392, 834
DpnII GATC 5 cut(s) 230, 345, 361, 390, 832
Eam1104I CTCTTC 1 cut(s) 269
EarI CTCTTC 1 cut(s) 269
EciI GGCGGA 1 cut(s) 71
Ecl136II GAGCTC 1 cut(s) 643
Eco130I CCWWGG 2 cut(s) 741, 888
Eco147I AGGCCT 2 cut(s) 50, 736
Eco24I GRGCYC 2 cut(s) 401, 645
Eco47I GGWCC 1 cut(s) 892
Eco47III AGCGCT 1 cut(s) 550
Eco53kI GAGCTC 1 cut(s) 643
Eco57I CTGAAG 1 cut(s) 407
Eco81I CCTNAGG 1 cut(s) 674
Eco88I CYCGRG 1 cut(s) 528
Eco91I GGTNACC 1 cut(s) 136
EcoICRI GAGCTC 1 cut(s) 643
EcoO65I GGTNACC 1 cut(s) 136
EcoT14I CCWWGG 2 cut(s) 741, 888
EcoT38I GRGCYC 2 cut(s) 401, 645
ErhI CCWWGG 2 cut(s) 741, 888
FaeI CATG 3 cut(s) 623, 719, 758
FaiI YATR 7 cut(s) 22, 518, 621, 717, 756, 764, 802
FaqI GGGAC 1 cut(s) 743
FatI CATG 3 cut(s) 619, 715, 754
FauI CCCGC 1 cut(s) 85
Fnu4HI GCNGC 4 cut(s) 157, 202, 211, 807
FokI GGATG 4 cut(s) 353, 447, 572, 848
FriOI GRGCYC 2 cut(s) 401, 645
Fsp4HI GCNGC 4 cut(s) 157, 202, 211, 807
GlaI GCGC 6 cut(s) 147, 164, 175, 429, 472, 550
GluI GCNGC 4 cut(s) 157, 202, 211, 807
HaeII RGCGCY 1 cut(s) 552
HaeIII GGCC 5 cut(s) 50, 159, 204, 497, 736
HapII CCGG 3 cut(s) 151, 305, 836
HhaI GCGC 6 cut(s) 148, 165, 176, 430, 473, 551
Hin1II CATG 3 cut(s) 623, 719, 758
Hin6I GCGC 6 cut(s) 146, 163, 174, 428, 471, 549
HinP1I GCGC 6 cut(s) 146, 163, 174, 428, 471, 549
HincII GTYRAC 2 cut(s) 103, 111
HindII GTYRAC 2 cut(s) 103, 111
HinfI GANTC 8 cut(s) 59, 65, 195, 242, 248, 410, 584, 884
HpaII CCGG 3 cut(s) 151, 305, 836
HphI GGTGA 3 cut(s) 130, 547, 791
Hpy166II GTNNAC 3 cut(s) 103, 111, 127
Hpy188I TCNGA 7 cut(s) 64, 194, 230, 247, 273, 387, 415
Hpy188III TCNNGA 5 cut(s) 151, 394, 464, 830, 836
Hpy8I GTNNAC 3 cut(s) 103, 111, 127
Hpy99I CGWCG 2 cut(s) 170, 876
HpyAV CCTTC 2 cut(s) 40, 411
HpyCH4III ACNGT 1 cut(s) 751
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 2 cut(s) 572, 638
HpyF10VI GCNNNNNNNGC 9 cut(s) 162, 171, 207, 210, 289, 405, 479, 569, 712
HpyF3I CTNAG 4 cut(s) 270, 288, 414, 674
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 3 cut(s) 623, 719, 758
HspAI GCGC 6 cut(s) 146, 163, 174, 428, 471, 549
Kpn2I TCCGGA 2 cut(s) 150, 835
KspI CCGCGG 1 cut(s) 202
Kzo9I GATC 5 cut(s) 230, 345, 361, 390, 832
LmnI GCTCC 4 cut(s) 153, 153, 288, 838
Lsp1109I GCAGC 2 cut(s) 222, 818
LweI GCATC 2 cut(s) 322, 550
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 1 cut(s) 136
MalI GATC 5 cut(s) 232, 347, 363, 392, 834
MbiI CCGCTC 1 cut(s) 156
MboI GATC 5 cut(s) 230, 345, 361, 390, 832
MboII GAAGA 4 cut(s) 22, 256, 400, 770
MhlI GDGCHC 2 cut(s) 401, 645
MluCI AATT 2 cut(s) 355, 708
MlyI GAGTC 4 cut(s) 204, 251, 404, 893
MmeI TCCRAC 1 cut(s) 561
MroI TCCGGA 2 cut(s) 150, 835
MroXI GAANNNNTTC 1 cut(s) 615
MslI CAYNNNNRTG 2 cut(s) 503, 720
MspA1I CMGCKG 1 cut(s) 201
MspI CCGG 3 cut(s) 151, 305, 836
MvnI CGCG 8 cut(s) 80, 132, 146, 165, 174, 201, 473, 876
MwoI GCNNNNNNNGC 9 cut(s) 162, 171, 207, 210, 289, 405, 479, 569, 712
NdeII GATC 5 cut(s) 230, 345, 361, 390, 832
NlaIII CATG 3 cut(s) 623, 719, 758
NlaIV GGNNCC 1 cut(s) 303
NmeAIII GCCGAG 3 cut(s) 32, 202, 265
NmuCI GTSAC 1 cut(s) 136
NspI RCATGY 1 cut(s) 719
PaeR7I CTCGAG 1 cut(s) 528
PceI AGGCCT 2 cut(s) 50, 736
PcsI WCGNNNNNNNCGW 3 cut(s) 41, 174, 243
PdmI GAANNNNTTC 1 cut(s) 615
PfeI GAWTC 4 cut(s) 59, 65, 248, 584
PkrI GCNGC 4 cut(s) 158, 203, 212, 808
PleI GAGTC 4 cut(s) 203, 250, 404, 892
PpsI GAGTC 4 cut(s) 203, 250, 404, 892
PshAI GACNNNNGTC 1 cut(s) 86
Psp124BI GAGCTC 1 cut(s) 645
PspEI GGTNACC 1 cut(s) 136
PspN4I GGNNCC 1 cut(s) 303
PspPI GGNCC 1 cut(s) 892
PspXI VCTCGAGB 1 cut(s) 528
RsaI GTAC 4 cut(s) 5, 128, 753, 899
RsaNI GTAC 4 cut(s) 4, 127, 752, 898
RseI CAYNNNNRTG 2 cut(s) 503, 720
SacI GAGCTC 1 cut(s) 645
SacII CCGCGG 1 cut(s) 202
SatI GCNGC 4 cut(s) 157, 202, 211, 807
Sau3AI GATC 5 cut(s) 230, 345, 361, 390, 832
Sau96I GGNCC 1 cut(s) 892
SchI GAGTC 4 cut(s) 204, 251, 404, 893
SduI GDGCHC 2 cut(s) 401, 645
SfaNI GCATC 2 cut(s) 322, 550
Sfr274I CTCGAG 1 cut(s) 528
Sfr303I CCGCGG 1 cut(s) 202
SgrBI CCGCGG 1 cut(s) 202
SinI GGWCC 1 cut(s) 892
SlaI CTCGAG 1 cut(s) 528
SmiMI CAYNNNNRTG 2 cut(s) 503, 720
SmlI CTYRAG 2 cut(s) 218, 528
SmoI CTYRAG 2 cut(s) 218, 528
Sse9I AATT 2 cut(s) 355, 708
SseBI AGGCCT 2 cut(s) 50, 736
SstI GAGCTC 1 cut(s) 645
StuI AGGCCT 2 cut(s) 50, 736
StyI CCWWGG 2 cut(s) 741, 888
TaaI ACNGT 1 cut(s) 751
TaiI ACGT 1 cut(s) 171
TaqI TCGA 3 cut(s) 378, 433, 529
TasI AATT 2 cut(s) 355, 708
TatI WGTACW 3 cut(s) 3, 751, 897
TauI GCSGC 2 cut(s) 159, 204
TfiI GAWTC 4 cut(s) 59, 65, 248, 584
TseFI GTSAC 1 cut(s) 136
TseI GCWGC 2 cut(s) 210, 806
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 5 cut(s) 449, 527, 576, 608, 771
VpaK11BI GGWCC 1 cut(s) 892
XapI RAATTY 1 cut(s) 355
XceI RCATGY 1 cut(s) 719
XhoI CTCGAG 1 cut(s) 528
XmnI GAANNNNTTC 1 cut(s) 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.