MD01G1064000.v1.1

Cell division control protein 14, SIN component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0014509
Physical Location & Seq
Forward (+)
16733157 .. 16744007
10851 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1064000.v1.1.491

Sequence Viewer

Length: 918 bp
ATGTACTTGAAGAAGTCGCTATGGAGTGAGGGGATAACGCCGAAGCCCTCGTCGGAATACGAACCAGAGCCGCCGTCCACCGCCGTAGGCGATCTGGTCAACTCGTTGACCCGGCAGAGAGTGTACCGCGAGGTCGTGCTCGCGCTCCGGAGCGGCCTCCGCGATGTTCGCGCCGAGTTCTCCTTCCTCCGTGTCCGCGGCCTCCTCAAGTTCCTCCGATCGGTCGCCGAGTCCGATTCCACCATCAACCTCTTCTCTCAGACACAATCGCTTCCTGAGCTTCAAGTCGTGCCGGTTCTGTTTCGGCACTCGCTGAACGATTCGGACGATGAGATCGTACGGAATTTGGATCACATATTCGGCGTCGAGCCGCTGAAGATCACAAGCCCTTCAACCGATTCCGAGGTTTCGCTTGCGCTTAGGGTTTTGGAGGGTTGCTGCCTGCTTCATCCGGACAGCGCGGTTTTGATGAATATATTACCGACTTGCGGCGTGATTGAGCAAGGAGCTTGTTTGGATGCTTTGATTGCTATTATGTTGGATTCATCAGCTAATCAAATGGATTTTGAGGCTTTTCATGGTATTGAGGAAGTTGCAGGGCTCAAAAGGGACAAACAAGCTTTTGAGGCTTTTCATGGTATTGAGGAAGTTGCAGAGCTCATAAGGGACAAGCATGTTGATGAGAATCTCAGGTTGAAATGTGGAGAGTTCTTGCTGGTGCTCATTGGTCATGTAAATGGGAGGGATAGGCCACCGTTGGCAACTGTACATGAGGACATAAGACGTCTTTTGGGTGAGAAATCTGCTTCCTTGATATGGGCAGCCAGTCAGTTTGGTTCGACTCTTGATCCTGAGCAGAGACTAACTGCACTTCACATCCAAGCTCGTCGCGTGATAGAGTCCTTCGATCTGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDC14

Protein Analysis

306

Amino Acids

34.08

Weight (kDa)

5.19

Isoelectric Point (pI)

56.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014509)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27750
fragaria_vesca FvH4_7g14460
malus_domestica MD01G1064000.v1.1 MD01G1064500.v1.1 MD07G1135900.v1.1
prunus_persica Prupe.2G171600_v2.0.a1
pyrus_communis pycom07g13330
rosa_chinensis RchiOBHm_Chr1g0355871
rosa_laevigata RLG00000028120
rosa_multiflora Rmu_sc0002284.1_g000020 Rmu_sc0004705.1_g000020
rosa_roxburghii Rroxscaffold_4G00299960
rosa_rugosa Rorug01G0248100
rosa_samantha Rh1AG261300 Rh1CG244400 Rh1DG258000
rosa_wichuraiana Rw1G023070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 787
AccBSI CCGCTC 1 cut(s) 153
AccII CGCG 7 cut(s) 129, 143, 162, 171, 198, 461, 891
AccIII TCCGGA 2 cut(s) 147, 451
AclWI GGATC 2 cut(s) 357, 842
AcsI RAATTY 1 cut(s) 343
AcuI CTGAAG 1 cut(s) 395
AcyI GRCGYC 2 cut(s) 363, 784
AfaI GTAC 5 cut(s) 5, 125, 339, 768, 914
AfiI CCNNNNNNNGG 3 cut(s) 220, 488, 816
AgsI TTSAA 4 cut(s) 10, 284, 393, 697
AluBI AGCT 6 cut(s) 280, 509, 551, 620, 658, 884
AluI AGCT 6 cut(s) 280, 509, 551, 620, 658, 884
Alw21I GWGCWC 3 cut(s) 141, 660, 723
Alw26I GTCTC 1 cut(s) 853
AlwI GGATC 2 cut(s) 357, 842
Aor13HI TCCGGA 2 cut(s) 147, 451
AoxI GGCC 3 cut(s) 154, 199, 749
ApeKI GCWGC 2 cut(s) 438, 821
ApoI RAATTY 1 cut(s) 343
ArsI GACNNNNNNTTYG 2 cut(s) 35, 67
AspLEI GCGC 4 cut(s) 145, 173, 418, 461
AsuC2I CCSGG 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 806
BanII GRGCYC 2 cut(s) 603, 660
Bbv12I GWGCWC 3 cut(s) 141, 660, 723
BbvI GCAGC 2 cut(s) 425, 833
BccI CCATC 1 cut(s) 251
BceAI ACGGC 2 cut(s) 58, 68
BcnI CCSGG 1 cut(s) 112
BcoDI GTCTC 1 cut(s) 853
BisI GCNGC 7 cut(s) 71, 154, 199, 371, 439, 490, 822
BlsI GCNGC 7 cut(s) 72, 155, 200, 372, 440, 491, 823
Bme1390I CCNGG 1 cut(s) 112
BmrFI CCNGG 1 cut(s) 112
BmsI GCATC 1 cut(s) 508
Bpu10I CCTNAGC 3 cut(s) 276, 419, 852
BpuEI CTTGAG 1 cut(s) 191
BpuMI CCSGG 1 cut(s) 112
BsaBI GATNNNNATC 1 cut(s) 684
BsaHI GRCGYC 2 cut(s) 363, 784
BsaJI CCNNGG 2 cut(s) 196, 402
BsaWI WCCGGW 2 cut(s) 147, 451
Bsc4I CCNNNNNNNGG 3 cut(s) 220, 488, 816
Bse118I RCCGGY 1 cut(s) 292
Bse1I ACTGG 1 cut(s) 825
Bse8I GATNNNNATC 1 cut(s) 684
BseAI TCCGGA 2 cut(s) 147, 451
BseDI CCNNGG 2 cut(s) 196, 402
BseGI GGATG 3 cut(s) 448, 523, 876
BseJI GATNNNNATC 1 cut(s) 684
BseLI CCNNNNNNNGG 3 cut(s) 220, 488, 816
BseMII CTCAG 4 cut(s) 267, 272, 703, 843
BseNI ACTGG 1 cut(s) 825
BseRI GAGGAG 1 cut(s) 194
BseXI GCAGC 2 cut(s) 425, 833
BsgI GTGCAG 1 cut(s) 852
Bsh1236I CGCG 7 cut(s) 129, 143, 162, 171, 198, 461, 891
Bsh1285I CGRYCG 2 cut(s) 221, 225
BshFI GGCC 3 cut(s) 156, 201, 751
BsiEI CGRYCG 2 cut(s) 221, 225
BsiHKAI GWGCWC 3 cut(s) 141, 660, 723
BsiSI CCGG 4 cut(s) 112, 148, 293, 452
BsiWI CGTACG 1 cut(s) 337
BslFI GGGAC 2 cut(s) 623, 680
BslI CCNNNNNNNGG 3 cut(s) 220, 488, 816
BsmAI GTCTC 1 cut(s) 853
BsmFI GGGAC 2 cut(s) 623, 680
BsnI GGCC 3 cut(s) 156, 201, 751
Bsp1286I GDGCHC 4 cut(s) 141, 603, 660, 723
Bsp13I TCCGGA 2 cut(s) 147, 451
Bsp1407I TGTACA 1 cut(s) 766
Bsp143I GATC 7 cut(s) 91, 218, 333, 349, 378, 847, 907
BspANI GGCC 3 cut(s) 156, 201, 751
BspCNI CTCAG 4 cut(s) 268, 271, 702, 844
BspEI TCCGGA 2 cut(s) 147, 451
BspFNI CGCG 7 cut(s) 129, 143, 162, 171, 198, 461, 891
BspPI GGATC 2 cut(s) 357, 842
BsrBI CCGCTC 1 cut(s) 153
BsrFI RCCGGY 1 cut(s) 292
BsrGI TGTACA 1 cut(s) 766
BsrI ACTGG 1 cut(s) 825
BssAI RCCGGY 1 cut(s) 292
BssECI CCNNGG 2 cut(s) 196, 402
BssMI GATC 7 cut(s) 91, 218, 333, 349, 378, 847, 907
BssNI GRCGYC 2 cut(s) 363, 784
Bst4CI ACNGT 2 cut(s) 756, 766
Bst6I CTCTTC 1 cut(s) 257
BstACI GRCGYC 2 cut(s) 363, 784
BstAUI TGTACA 1 cut(s) 766
BstC8I GCNNGC 3 cut(s) 141, 414, 443
BstDEI CTNAG 5 cut(s) 258, 276, 419, 689, 852
BstDSI CCRYGG 1 cut(s) 196
BstF5I GGATG 3 cut(s) 448, 523, 876
BstFNI CGCG 7 cut(s) 129, 143, 162, 171, 198, 461, 891
BstHHI GCGC 4 cut(s) 145, 173, 418, 461
BstKTI GATC 7 cut(s) 94, 221, 336, 352, 381, 850, 910
BstMAI GTCTC 1 cut(s) 853
BstMBI GATC 7 cut(s) 91, 218, 333, 349, 378, 847, 907
BstMCI CGRYCG 2 cut(s) 221, 225
BstMWI GCNNNNNNNGC 5 cut(s) 159, 168, 277, 527, 626
BstNSI RCATGY 1 cut(s) 677
BstSCI CCNGG 1 cut(s) 110
BstUI CGCG 7 cut(s) 129, 143, 162, 171, 198, 461, 891
BstV1I GCAGC 2 cut(s) 425, 833
BsuRI GGCC 3 cut(s) 156, 201, 751
BtgI CCRYGG 1 cut(s) 196
BtgZI GCGATG 1 cut(s) 177
BtsCI GGATG 3 cut(s) 448, 523, 876
Cac8I GCNNGC 3 cut(s) 141, 414, 443
CfoI GCGC 4 cut(s) 145, 173, 418, 461
Cfr10I RCCGGY 1 cut(s) 292
Cfr42I CCGCGG 1 cut(s) 199
CseI GACGC 1 cut(s) 352
Csp6I GTAC 5 cut(s) 4, 124, 338, 767, 913
CviAII CATG 5 cut(s) 578, 635, 674, 731, 770
CviQI GTAC 5 cut(s) 4, 124, 338, 767, 913
DdeI CTNAG 5 cut(s) 258, 276, 419, 689, 852
DpnI GATC 7 cut(s) 93, 220, 335, 351, 380, 849, 909
DpnII GATC 7 cut(s) 91, 218, 333, 349, 378, 847, 907
Eam1104I CTCTTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 257
Ecl136II GAGCTC 1 cut(s) 658
Eco24I GRGCYC 2 cut(s) 603, 660
Eco53kI GAGCTC 1 cut(s) 658
Eco57I CTGAAG 1 cut(s) 395
EcoICRI GAGCTC 1 cut(s) 658
EcoT38I GRGCYC 2 cut(s) 603, 660
FaeI CATG 5 cut(s) 581, 638, 677, 734, 773
FaqI GGGAC 2 cut(s) 623, 680
FatI CATG 5 cut(s) 577, 634, 673, 730, 769
Fnu4HI GCNGC 7 cut(s) 71, 154, 199, 371, 439, 490, 822
FokI GGATG 3 cut(s) 435, 530, 863
FriOI GRGCYC 2 cut(s) 603, 660
Fsp4HI GCNGC 7 cut(s) 71, 154, 199, 371, 439, 490, 822
GlaI GCGC 4 cut(s) 144, 172, 417, 460
GluI GCNGC 7 cut(s) 71, 154, 199, 371, 439, 490, 822
HaeIII GGCC 3 cut(s) 156, 201, 751
HapII CCGG 4 cut(s) 112, 148, 293, 452
HgaI GACGC 1 cut(s) 352
HhaI GCGC 4 cut(s) 145, 173, 418, 461
Hin1I GRCGYC 2 cut(s) 363, 784
Hin1II CATG 5 cut(s) 581, 638, 677, 734, 773
Hin6I GCGC 4 cut(s) 143, 171, 416, 459
HinP1I GCGC 4 cut(s) 143, 171, 416, 459
HincII GTYRAC 2 cut(s) 100, 108
HindII GTYRAC 2 cut(s) 100, 108
HindIII AAGCTT 1 cut(s) 618
HinfI GANTC 8 cut(s) 230, 236, 320, 398, 542, 685, 841, 899
HpaII CCGG 4 cut(s) 112, 148, 293, 452
HphI GGTGA 1 cut(s) 806
Hpy166II GTNNAC 4 cut(s) 78, 100, 108, 124
Hpy188I TCNGA 6 cut(s) 55, 218, 235, 261, 325, 403
Hpy188III TCNNGA 5 cut(s) 148, 275, 452, 845, 851
Hpy8I GTNNAC 4 cut(s) 78, 100, 108, 124
Hpy99I CGWCG 3 cut(s) 55, 368, 891
HpyAV CCTTC 3 cut(s) 193, 399, 913
HpyCH4III ACNGT 2 cut(s) 756, 766
HpyCH4IV ACGT 1 cut(s) 784
HpyCH4V TGCA 3 cut(s) 596, 653, 869
HpyF10VI GCNNNNNNNGC 5 cut(s) 159, 168, 277, 527, 626
HpyF3I CTNAG 5 cut(s) 258, 276, 419, 689, 852
HpySE526I ACGT 1 cut(s) 784
Hsp92I GRCGYC 2 cut(s) 363, 784
Hsp92II CATG 5 cut(s) 581, 638, 677, 734, 773
HspAI GCGC 4 cut(s) 143, 171, 416, 459
Kpn2I TCCGGA 2 cut(s) 147, 451
KspI CCGCGG 1 cut(s) 199
Kzo9I GATC 7 cut(s) 91, 218, 333, 349, 378, 847, 907
LmnI GCTCC 3 cut(s) 150, 150, 506
Lsp1109I GCAGC 2 cut(s) 425, 833
LweI GCATC 1 cut(s) 508
MaeII ACGT 1 cut(s) 784
MalI GATC 7 cut(s) 93, 220, 335, 351, 380, 849, 909
MbiI CCGCTC 1 cut(s) 153
MboI GATC 7 cut(s) 91, 218, 333, 349, 378, 847, 907
MboII GAAGA 3 cut(s) 22, 244, 388
MhlI GDGCHC 4 cut(s) 141, 603, 660, 723
MluCI AATT 1 cut(s) 343
MlyI GAGTC 3 cut(s) 239, 835, 908
MmeI TCCRAC 2 cut(s) 33, 519
MroI TCCGGA 2 cut(s) 147, 451
MslI CAYNNNNRTG 2 cut(s) 678, 735
MspA1I CMGCKG 2 cut(s) 198, 373
MspI CCGG 4 cut(s) 112, 148, 293, 452
MspR9I CCNGG 1 cut(s) 112
MvnI CGCG 7 cut(s) 129, 143, 162, 171, 198, 461, 891
MwoI GCNNNNNNNGC 5 cut(s) 159, 168, 277, 527, 626
NciI CCSGG 1 cut(s) 112
NdeII GATC 7 cut(s) 91, 218, 333, 349, 378, 847, 907
NlaIII CATG 5 cut(s) 581, 638, 677, 734, 773
NmeAIII GCCGAG 2 cut(s) 199, 253
NspI RCATGY 1 cut(s) 677
PcsI WCGNNNNNNNCGW 3 cut(s) 231, 324, 333
PfeI GAWTC 5 cut(s) 236, 320, 398, 542, 685
Pfl23II CGTACG 1 cut(s) 337
PkrI GCNGC 7 cut(s) 72, 155, 200, 372, 440, 491, 823
Ple19I CGATCG 1 cut(s) 221
PleI GAGTC 3 cut(s) 238, 835, 907
PpsI GAGTC 3 cut(s) 238, 835, 907
Psp124BI GAGCTC 1 cut(s) 660
PspLI CGTACG 1 cut(s) 337
PvuI CGATCG 1 cut(s) 221
RsaI GTAC 5 cut(s) 5, 125, 339, 768, 914
RsaNI GTAC 5 cut(s) 4, 124, 338, 767, 913
RseI CAYNNNNRTG 2 cut(s) 678, 735
SacI GAGCTC 1 cut(s) 660
SacII CCGCGG 1 cut(s) 199
SatI GCNGC 7 cut(s) 71, 154, 199, 371, 439, 490, 822
Sau3AI GATC 7 cut(s) 91, 218, 333, 349, 378, 847, 907
SchI GAGTC 3 cut(s) 239, 835, 908
ScrFI CCNGG 1 cut(s) 112
SduI GDGCHC 4 cut(s) 141, 603, 660, 723
SfaNI GCATC 1 cut(s) 508
Sfr303I CCGCGG 1 cut(s) 199
SgrBI CCGCGG 1 cut(s) 199
SmiMI CAYNNNNRTG 2 cut(s) 678, 735
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 1 cut(s) 343
SstI GAGCTC 1 cut(s) 660
StyD4I CCNGG 1 cut(s) 110
TaaI ACNGT 2 cut(s) 756, 766
TaiI ACGT 1 cut(s) 787
TaqI TCGA 3 cut(s) 366, 839, 906
TaqII GACCGA 1 cut(s) 211
TasI AATT 1 cut(s) 343
TatI WGTACW 3 cut(s) 3, 766, 912
TauI GCSGC 5 cut(s) 73, 156, 201, 373, 492
TfiI GAWTC 5 cut(s) 236, 320, 398, 542, 685
TseI GCWGC 2 cut(s) 438, 821
TspDTI ATGAA 5 cut(s) 437, 485, 534, 566, 623
TspGWI ACGGA 2 cut(s) 179, 355
XapI RAATTY 1 cut(s) 343
XceI RCATGY 1 cut(s) 677
ZraI GACGTC 1 cut(s) 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.