Rmu_sc0002284.1_g000020

Cell division control protein 14, SIN component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002284.1
OG0014509
Physical Location & Seq
Forward (+)
86643 .. 88519
1877 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002284.1_g000020.1.cds

Sequence Viewer

Length: 900 bp
atgtacttgaagaagccccaatggaccgagggaatcaccccgaagccctcgccggaatccgaatcagacccaccggccaccgccgtcggcgatctggtcaactccttgaccacccagagagtctaccgcgaggtcacgctcgcgctccgaagcggcctgagggaggtccgcgccgagttctcgttcctccgagtccgcggcctccgctcgctcctcaagttcctccgatccgtcgccgagtccgactccaccatcaacctcttctcccagacccaatcgattccggagcttcaagtggtgccggttctgtttcaacactcgctgaaagaggcggaggacgagatcgtgaggaatttggatcacattttcggcgtggagcctctgaaaatcaccactccttcgactgactcggagatttcgcttgcgcttcgtgttttggaagggtgctgtttgcttcatcgggaaagtgccgtcttggctcaccagcacaaggctattcaggtgttgatgaatattttacctactagaggagtggctgagcagggtgtgtgcttggatgctttgactgccattatgttggattcgtcggctaatcaaatggactttgaggcacttaatggtattgaggaagttgcagagcttataagagataagcaagttgatgagaatctcaggttgaaatgcggagagttcctgctgctactcatagggcatgtaaatgggagggacaggccacctttggcaactgtacatgaagacataaagcgacttttgggtgagaaatctgcttcccttatctgggcggccagtcaatttggctcaactcttgatccggagcaaagactaactgcccttcacatccaagctcgtcgtgtactggagtcattggacctgtactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDC14

Protein Analysis

299

Amino Acids

33.34

Weight (kDa)

5.46

Isoelectric Point (pI)

48.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014509)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27750
fragaria_vesca FvH4_7g14460
malus_domestica MD01G1064000.v1.1 MD01G1064500.v1.1 MD07G1135900.v1.1
prunus_persica Prupe.2G171600_v2.0.a1
pyrus_communis pycom07g13330
rosa_chinensis RchiOBHm_Chr1g0355871
rosa_laevigata RLG00000028120
rosa_multiflora Rmu_sc0002284.1_g000020 Rmu_sc0004705.1_g000020
rosa_roxburghii Rroxscaffold_4G00299960
rosa_rugosa Rorug01G0248100
rosa_samantha Rh1AG261300 Rh1CG244400 Rh1DG258000
rosa_wichuraiana Rw1G023070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 644
AccB1I GGYRCC 1 cut(s) 298
AccBSI CCGCTC 1 cut(s) 207
AccI GTMKAC 1 cut(s) 123
AccII CGCG 4 cut(s) 129, 143, 171, 198
AccIII TCCGGA 2 cut(s) 283, 832
AclWI GGATC 3 cut(s) 222, 366, 824
AcoI YGGCCR 2 cut(s) 75, 804
AcsI RAATTY 1 cut(s) 352
AfaI GTAC 4 cut(s) 5, 750, 876, 896
AfiI CCNNNNNNNGG 5 cut(s) 163, 490, 527, 798, 799
AgsI TTSAA 4 cut(s) 10, 293, 314, 679
AluBI AGCT 3 cut(s) 289, 640, 866
AluI AGCT 3 cut(s) 289, 640, 866
AlwI GGATC 3 cut(s) 222, 366, 824
Aor13HI TCCGGA 2 cut(s) 283, 832
AoxI GGCC 5 cut(s) 75, 154, 199, 731, 804
ApeKI GCWGC 1 cut(s) 697
ApoI RAATTY 1 cut(s) 352
AspLEI GCGC 3 cut(s) 145, 173, 427
AspS9I GGNCC 3 cut(s) 24, 166, 889
AsuHPI GGTGA 4 cut(s) 28, 382, 473, 788
AvaII GGWCC 3 cut(s) 24, 166, 889
AxyI CCTNAGG 1 cut(s) 158
BanI GGYRCC 1 cut(s) 298
BbsI GAAGAC 1 cut(s) 762
BbvI GCAGC 1 cut(s) 684
BccI CCATC 1 cut(s) 260
BceAI ACGGC 2 cut(s) 68, 455
BfaI CTAG 1 cut(s) 525
BglI GCCNNNNNGGC 1 cut(s) 476
BisI GCNGC 4 cut(s) 154, 199, 698, 804
BlpI GCTNAGC 1 cut(s) 537
BlsI GCNGC 4 cut(s) 155, 200, 699, 805
Bme18I GGWCC 3 cut(s) 24, 166, 889
BmgT120I GGNCC 3 cut(s) 24, 166, 889
BmiI GGNNCC 2 cut(s) 300, 378
BmsI GCATC 1 cut(s) 547
BpiI GAAGAC 1 cut(s) 762
BplI GAGNNNNNCTC 2 cut(s) 230, 262
BpmI CTGGAG 1 cut(s) 899
Bpu1102I GCTNAGC 1 cut(s) 537
BpuEI CTTGAG 1 cut(s) 200
Bsa29I ATCGAT 1 cut(s) 278
BsaBI GATNNNNATC 1 cut(s) 666
BsaJI CCNNGG 2 cut(s) 27, 196
BsaWI WCCGGW 2 cut(s) 283, 832
BsaXI ACNNNNNCTCC 2 cut(s) 248, 278
Bsc4I CCNNNNNNNGG 5 cut(s) 163, 490, 527, 798, 799
Bse118I RCCGGY 2 cut(s) 73, 301
Bse1I ACTGG 2 cut(s) 807, 882
Bse21I CCTNAGG 1 cut(s) 158
Bse8I GATNNNNATC 1 cut(s) 666
BseAI TCCGGA 2 cut(s) 283, 832
BseCI ATCGAT 1 cut(s) 278
BseDI CCNNGG 2 cut(s) 27, 196
BseGI GGATG 2 cut(s) 562, 858
BseJI GATNNNNATC 1 cut(s) 666
BseLI CCNNNNNNNGG 5 cut(s) 163, 490, 527, 798, 799
BseMII CTCAG 3 cut(s) 149, 528, 685
BseNI ACTGG 2 cut(s) 807, 882
BseRI GAGGAG 2 cut(s) 203, 543
BseXI GCAGC 1 cut(s) 684
Bsh1236I CGCG 4 cut(s) 129, 143, 171, 198
BshFI GGCC 5 cut(s) 77, 156, 201, 733, 806
BshNI GGYRCC 1 cut(s) 298
BshVI ATCGAT 1 cut(s) 278
BsiSI CCGG 5 cut(s) 53, 74, 284, 302, 833
BslFI GGGAC 1 cut(s) 740
BslI CCNNNNNNNGG 5 cut(s) 163, 490, 527, 798, 799
BsmFI GGGAC 1 cut(s) 740
BsnI GGCC 5 cut(s) 77, 156, 201, 733, 806
Bsp13I TCCGGA 2 cut(s) 283, 832
Bsp1407I TGTACA 1 cut(s) 748
Bsp143I GATC 5 cut(s) 91, 227, 342, 358, 829
Bsp1720I GCTNAGC 1 cut(s) 537
BspANI GGCC 5 cut(s) 77, 156, 201, 733, 806
BspCNI CTCAG 3 cut(s) 150, 529, 684
BspDI ATCGAT 1 cut(s) 278
BspEI TCCGGA 2 cut(s) 283, 832
BspFNI CGCG 4 cut(s) 129, 143, 171, 198
BspLI GGNNCC 2 cut(s) 300, 378
BspPI GGATC 3 cut(s) 222, 366, 824
BspT107I GGYRCC 1 cut(s) 298
BsrBI CCGCTC 1 cut(s) 207
BsrFI RCCGGY 2 cut(s) 73, 301
BsrGI TGTACA 1 cut(s) 748
BsrI ACTGG 2 cut(s) 807, 882
BssAI RCCGGY 2 cut(s) 73, 301
BssECI CCNNGG 2 cut(s) 27, 196
BssMI GATC 5 cut(s) 91, 227, 342, 358, 829
Bst4CI ACNGT 1 cut(s) 748
Bst6I CTCTTC 1 cut(s) 266
BstAUI TGTACA 1 cut(s) 748
BstC8I GCNNGC 3 cut(s) 141, 209, 423
BstDEI CTNAG 3 cut(s) 158, 537, 671
BstDSI CCRYGG 1 cut(s) 196
BstENI CCTNNNNNAGG 2 cut(s) 161, 525
BstF5I GGATG 2 cut(s) 562, 858
BstFNI CGCG 4 cut(s) 129, 143, 171, 198
BstHHI GCGC 3 cut(s) 145, 173, 427
BstKTI GATC 5 cut(s) 94, 230, 345, 361, 832
BstMBI GATC 5 cut(s) 91, 227, 342, 358, 829
BstMWI GCNNNNNNNGC 3 cut(s) 204, 476, 566
BstNSI RCATGY 1 cut(s) 716
BstUI CGCG 4 cut(s) 129, 143, 171, 198
BstV1I GCAGC 1 cut(s) 684
BstV2I GAAGAC 1 cut(s) 762
BstXI CCANNNNNNTGG 1 cut(s) 577
Bsu15I ATCGAT 1 cut(s) 278
Bsu36I CCTNAGG 1 cut(s) 158
BsuRI GGCC 5 cut(s) 77, 156, 201, 733, 806
BsuTUI ATCGAT 1 cut(s) 278
BtgI CCRYGG 1 cut(s) 196
BtsCI GGATG 2 cut(s) 562, 858
Cac8I GCNNGC 3 cut(s) 141, 209, 423
CfoI GCGC 3 cut(s) 145, 173, 427
Cfr10I RCCGGY 2 cut(s) 73, 301
Cfr13I GGNCC 3 cut(s) 24, 166, 889
Cfr42I CCGCGG 1 cut(s) 199
ClaI ATCGAT 1 cut(s) 278
Csp6I GTAC 4 cut(s) 4, 749, 875, 895
CviAII CATG 2 cut(s) 713, 752
CviQI GTAC 4 cut(s) 4, 749, 875, 895
DdeI CTNAG 3 cut(s) 158, 537, 671
DpnI GATC 5 cut(s) 93, 229, 344, 360, 831
DpnII GATC 5 cut(s) 91, 227, 342, 358, 829
EaeI YGGCCR 2 cut(s) 75, 804
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
EciI GGCGGA 1 cut(s) 347
Eco47I GGWCC 3 cut(s) 24, 166, 889
Eco81I CCTNAGG 1 cut(s) 158
EcoNI CCTNNNNNAGG 2 cut(s) 161, 525
FaeI CATG 2 cut(s) 716, 755
FaiI YATR 6 cut(s) 575, 644, 707, 714, 753, 761
FaqI GGGAC 1 cut(s) 740
FatI CATG 2 cut(s) 712, 751
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 4 cut(s) 154, 199, 698, 804
FokI GGATG 2 cut(s) 569, 845
Fsp4HI GCNGC 4 cut(s) 154, 199, 698, 804
FspBI CTAG 1 cut(s) 525
GlaI GCGC 3 cut(s) 144, 172, 426
GluI GCNGC 4 cut(s) 154, 199, 698, 804
GsuI CTGGAG 1 cut(s) 899
HaeIII GGCC 5 cut(s) 77, 156, 201, 733, 806
HapII CCGG 5 cut(s) 53, 74, 284, 302, 833
HhaI GCGC 3 cut(s) 145, 173, 427
Hin1II CATG 2 cut(s) 716, 755
Hin6I GCGC 3 cut(s) 143, 171, 425
HinP1I GCGC 3 cut(s) 143, 171, 425
HincII GTYRAC 1 cut(s) 100
HindII GTYRAC 1 cut(s) 100
HpaII CCGG 5 cut(s) 53, 74, 284, 302, 833
HphI GGTGA 4 cut(s) 28, 382, 473, 788
Hpy166II GTNNAC 3 cut(s) 100, 124, 875
Hpy188I TCNGA 8 cut(s) 61, 67, 149, 191, 227, 244, 384, 412
Hpy188III TCNNGA 5 cut(s) 284, 346, 461, 827, 833
Hpy8I GTNNAC 3 cut(s) 100, 124, 875
Hpy99I CGWCG 4 cut(s) 89, 236, 589, 873
HpyAV CCTTC 3 cut(s) 408, 434, 863
HpyCH4III ACNGT 1 cut(s) 748
HpyCH4V TGCA 1 cut(s) 635
HpyF10VI GCNNNNNNNGC 3 cut(s) 204, 476, 566
HpyF3I CTNAG 3 cut(s) 158, 537, 671
Hsp92II CATG 2 cut(s) 716, 755
HspAI GCGC 3 cut(s) 143, 171, 425
Kpn2I TCCGGA 2 cut(s) 283, 832
KspI CCGCGG 1 cut(s) 199
Kzo9I GATC 5 cut(s) 91, 227, 342, 358, 829
LmnI GCTCC 5 cut(s) 150, 216, 286, 376, 835
Lsp1109I GCAGC 1 cut(s) 684
LweI GCATC 1 cut(s) 547
MaeI CTAG 1 cut(s) 525
MaeIII GTNAC 1 cut(s) 133
MalI GATC 5 cut(s) 93, 229, 344, 360, 831
MbiI CCGCTC 1 cut(s) 207
MboI GATC 5 cut(s) 91, 227, 342, 358, 829
MboII GAAGA 3 cut(s) 22, 253, 767
MluCI AATT 2 cut(s) 352, 812
MlyI GAGTC 6 cut(s) 129, 201, 239, 248, 401, 890
MmeI TCCRAC 2 cut(s) 267, 558
MroI TCCGGA 2 cut(s) 283, 832
MseI TTAA 1 cut(s) 615
MslI CAYNNNNRTG 1 cut(s) 717
MspA1I CMGCKG 1 cut(s) 198
MspI CCGG 5 cut(s) 53, 74, 284, 302, 833
MvnI CGCG 4 cut(s) 129, 143, 171, 198
MwoI GCNNNNNNNGC 3 cut(s) 204, 476, 566
NdeII GATC 5 cut(s) 91, 227, 342, 358, 829
NlaIII CATG 2 cut(s) 716, 755
NlaIV GGNNCC 2 cut(s) 300, 378
NmeAIII GCCGAG 2 cut(s) 199, 262
NmuCI GTSAC 1 cut(s) 133
NspI RCATGY 1 cut(s) 716
PcsI WCGNNNNNNNCGW 1 cut(s) 240
PfeI GAWTC 6 cut(s) 33, 56, 62, 280, 581, 667
PkrI GCNGC 4 cut(s) 155, 200, 699, 805
PleI GAGTC 6 cut(s) 128, 200, 239, 247, 401, 889
PpsI GAGTC 6 cut(s) 128, 200, 239, 247, 401, 889
PsiI TTATAA 1 cut(s) 644
PspN4I GGNNCC 2 cut(s) 300, 378
PspPI GGNCC 3 cut(s) 24, 166, 889
RsaI GTAC 4 cut(s) 5, 750, 876, 896
RsaNI GTAC 4 cut(s) 4, 749, 875, 895
RseI CAYNNNNRTG 1 cut(s) 717
SacII CCGCGG 1 cut(s) 199
SaqAI TTAA 1 cut(s) 615
SatI GCNGC 4 cut(s) 154, 199, 698, 804
Sau3AI GATC 5 cut(s) 91, 227, 342, 358, 829
Sau96I GGNCC 3 cut(s) 24, 166, 889
SchI GAGTC 6 cut(s) 129, 201, 239, 248, 401, 890
SfaNI GCATC 1 cut(s) 547
Sfr303I CCGCGG 1 cut(s) 199
SgrBI CCGCGG 1 cut(s) 199
SinI GGWCC 3 cut(s) 24, 166, 889
SmiMI CAYNNNNRTG 1 cut(s) 717
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 2 cut(s) 352, 812
SspI AATATT 1 cut(s) 514
SspMI CTAG 1 cut(s) 525
TaaI ACNGT 1 cut(s) 748
TaqI TCGA 2 cut(s) 278, 401
TaqII GACCGA 1 cut(s) 41
TasI AATT 2 cut(s) 352, 812
TatI WGTACW 4 cut(s) 3, 748, 874, 894
TauI GCSGC 3 cut(s) 156, 201, 806
TfiI GAWTC 6 cut(s) 33, 56, 62, 280, 581, 667
Tru1I TTAA 1 cut(s) 615
Tru9I TTAA 1 cut(s) 615
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 1 cut(s) 697
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 3 cut(s) 446, 524, 768
TspGWI ACGGA 1 cut(s) 220
VpaK11BI GGWCC 3 cut(s) 24, 166, 889
XagI CCTNNNNNAGG 2 cut(s) 161, 525
XapI RAATTY 1 cut(s) 352
XceI RCATGY 1 cut(s) 716
XmiI GTMKAC 1 cut(s) 123
XspI CTAG 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.