Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014478

Physical Location & Seq

Genomic Coordinates Reverse (-)

13935538 .. 13937555

Gene Structure 2018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G28025.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGTGGTGACGTCTTTCTCTTCAGCGCCGCCTATCTTCTTCTTACCTGGAGCTGATGCTCAGTTTTCTTCTTCCAATGGAAGGTTTGCTATTCCTTCCTCTTCTCTCGTAAAGGGACTAAGAAGACACCAAGATGCAAAGTTGGTGGGCAACAGAGCCAGAGTTGGAGTAGTACGAGTCCTAGCGAACCCAAATGTATCTCCTCCTCCTCCTCCAGGAAAAGCAAAGGTAAAAAAAGAGGTAATCATGGTAGACCCTCTTGAGGCTAAGCGGTTAGCTAGTAAGCAAATGGAAGAGATTAAAGGCAGAGAAAAGCAACAGAGAAGGCGTGAAATAGAGGCTATTAACGGAGCATGGGCAATCATAGGACTCATGATAGGGCTGGTGATCGAAGCTCAAACGGGGAAGGGTATTCTGGCTCAGTTGGCTGGTTATTGGTCTGCAGTTGTCCATTTGTTCACTCCATCAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

157

Amino Acids

16.95

Weight (kDa)

10.6

Isoelectric Point (pI)

46.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28025 AT4G28025
fragaria_vesca	FvH4_4g08570 FvH4_4g08570
malus_domestica	MD16G1263600.v1.1
prunus_persica	Prupe.1G095600_v2.0.a1
pyrus_communis	pycom16g23250
rosa_chinensis	RchiOBHm_Chr4g0404651
rosa_laevigata	RLG00000008916
rosa_multiflora	Rmu_sc0002699.1_g000039
rosa_roxburghii	Rroxscaffold_5G00348800
rosa_rugosa	Rorug04G0048500
rosa_samantha	Rh4AG124200 Rh4BG118300 Rh4CG132300 Rh4DG117300
rosa_wichuraiana	Rw4G010070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	14
AccI	GTMKAC	1 cut(s)	252
AciI	CCGC	2 cut(s)	29, 271
AcuI	CTGAAG	1 cut(s)	6
AcyI	GRCGYC	1 cut(s)	11
AfaI	GTAC	1 cut(s)	174
AfiI	CCNNNNNNNGG	3 cut(s)	81, 215, 262
AjnI	CCWGG	2 cut(s)	46, 214
AluBI	AGCT	3 cut(s)	53, 278, 395
AluI	AGCT	3 cut(s)	53, 278, 395
AspLEI	GCGC	1 cut(s)	28
AsuHPI	GGTGA	2 cut(s)	19, 397
BbsI	GAAGAC	1 cut(s)	130
BccI	CCATC	1 cut(s)	472
BciT130I	CCWGG	2 cut(s)	48, 216
BfaI	CTAG	2 cut(s)	182, 279
BfmI	CTRYAG	1 cut(s)	441
BfoI	RGCGCY	1 cut(s)	29
BisI	GCNGC	1 cut(s)	29
BlpI	GCTNAGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	30
Bme1390I	CCNGG	2 cut(s)	48, 216
BmrFI	CCNGG	2 cut(s)	48, 216
BmsI	GCATC	2 cut(s)	46, 124
BpiI	GAAGAC	1 cut(s)	130
BpmI	CTGGAG	2 cut(s)	69, 198
Bpu1102I	GCTNAGC	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	281
BsaHI	GRCGYC	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	3 cut(s)	81, 215, 262
BseBI	CCWGG	2 cut(s)	48, 216
BseLI	CCNNNNNNNGG	3 cut(s)	81, 215, 262
BseMII	CTCAG	2 cut(s)	74, 434
BseRI	GAGGAG	4 cut(s)	192, 195, 198, 201
BslFI	GGGAC	1 cut(s)	129
BslI	CCNNNNNNNGG	3 cut(s)	81, 215, 262
BsmFI	GGGAC	1 cut(s)	129
Bsp143I	GATC	1 cut(s)	387
Bsp1720I	GCTNAGC	1 cut(s)	267
BspACI	CCGC	2 cut(s)	29, 271
BspCNI	CTCAG	2 cut(s)	73, 433
BspHI	TCATGA	1 cut(s)	372
BspMAI	CTGCAG	1 cut(s)	445
BssMI	GATC	1 cut(s)	387
BssNI	GRCGYC	1 cut(s)	11
Bst2UI	CCWGG	2 cut(s)	48, 216
Bst6I	CTCTTC	3 cut(s)	25, 106, 288
BstACI	GRCGYC	1 cut(s)	11
BstDEI	CTNAG	5 cut(s)	60, 119, 267, 420, 471
BstENI	CCTNNNNNAGG	1 cut(s)	213
BstH2I	RGCGCY	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	1 cut(s)	390
BstMBI	GATC	1 cut(s)	387
BstMWI	GCNNNNNNNGC	1 cut(s)	425
BstNI	CCWGG	2 cut(s)	48, 216
BstSCI	CCNGG	2 cut(s)	46, 214
BstSFI	CTRYAG	1 cut(s)	441
BstV2I	GAAGAC	1 cut(s)	130
CciI	TCATGA	1 cut(s)	372
CfoI	GCGC	1 cut(s)	28
Csp6I	GTAC	1 cut(s)	173
CspCI	CAANNNNNGTGG	2 cut(s)	126, 161
CviAII	CATG	3 cut(s)	247, 354, 373
CviJI	RGCY	9 cut(s)	53, 158, 266, 278, 341, 382, 395, 419, 428
CviKI_1	RGCY	9 cut(s)	53, 158, 266, 278, 341, 382, 395, 419, 428
CviQI	GTAC	1 cut(s)	173
DdeI	CTNAG	5 cut(s)	60, 119, 267, 420, 471
DpnI	GATC	1 cut(s)	389
DpnII	GATC	1 cut(s)	387
Eam1104I	CTCTTC	3 cut(s)	25, 106, 288
EarI	CTCTTC	3 cut(s)	25, 106, 288
Eco57I	CTGAAG	1 cut(s)	6
EcoNI	CCTNNNNNAGG	1 cut(s)	213
EcoRII	CCWGG	2 cut(s)	46, 214
FaeI	CATG	3 cut(s)	250, 357, 376
FaiI	YATR	4 cut(s)	248, 355, 365, 374
FaqI	GGGAC	1 cut(s)	129
FatI	CATG	3 cut(s)	246, 353, 372
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	1 cut(s)	29
Fsp4HI	GCNGC	1 cut(s)	29
FspBI	CTAG	2 cut(s)	182, 279
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	1 cut(s)	29
GsuI	CTGGAG	2 cut(s)	69, 198
HaeII	RGCGCY	1 cut(s)	29
HhaI	GCGC	1 cut(s)	28
Hin1I	GRCGYC	1 cut(s)	11
Hin1II	CATG	3 cut(s)	250, 357, 376
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HinfI	GANTC	2 cut(s)	177, 369
HphI	GGTGA	2 cut(s)	19, 397
Hpy166II	GTNNAC	2 cut(s)	253, 459
Hpy188III	TCNNGA	2 cut(s)	260, 373
Hpy8I	GTNNAC	2 cut(s)	253, 459
HpyAV	CCTTC	4 cut(s)	75, 105, 318, 400
HpyCH4IV	ACGT	1 cut(s)	11
HpyCH4V	TGCA	2 cut(s)	137, 443
HpyF10VI	GCNNNNNNNGC	1 cut(s)	425
HpyF3I	CTNAG	5 cut(s)	60, 119, 267, 420, 471
HpySE526I	ACGT	1 cut(s)	11
Hsp92I	GRCGYC	1 cut(s)	11
Hsp92II	CATG	3 cut(s)	250, 357, 376
HspAI	GCGC	1 cut(s)	26
Kzo9I	GATC	1 cut(s)	387
LmnI	GCTCC	2 cut(s)	50, 350
LpnPI	CCDG	8 cut(s)	33, 60, 172, 201, 228, 368, 401, 414
LweI	GCATC	2 cut(s)	46, 124
MaeI	CTAG	2 cut(s)	182, 279
MaeII	ACGT	1 cut(s)	11
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	1 cut(s)	389
MboI	GATC	1 cut(s)	387
MboII	GAAGA	8 cut(s)	12, 28, 31, 60, 63, 93, 135, 305
MlyI	GAGTC	2 cut(s)	186, 363
MmeI	TCCRAC	1 cut(s)	145
MnlI	CCTC	9 cut(s)	109, 213, 216, 219, 222, 232, 256, 267, 331
MseI	TTAA	2 cut(s)	300, 345
MslI	CAYNNNNRTG	1 cut(s)	132
MspR9I	CCNGG	2 cut(s)	48, 216
MvaI	CCWGG	2 cut(s)	48, 216
MwoI	GCNNNNNNNGC	1 cut(s)	425
NdeII	GATC	1 cut(s)	387
NlaIII	CATG	3 cut(s)	250, 357, 376
NmuCI	GTSAC	1 cut(s)	7
PagI	TCATGA	1 cut(s)	372
PfoI	TCCNGGA	1 cut(s)	214
PkrI	GCNGC	1 cut(s)	30
PleI	GAGTC	2 cut(s)	185, 363
PpsI	GAGTC	2 cut(s)	185, 363
Psp6I	CCWGG	2 cut(s)	46, 214
PspGI	CCWGG	2 cut(s)	46, 214
PstI	CTGCAG	1 cut(s)	445
RsaI	GTAC	1 cut(s)	174
RsaNI	GTAC	1 cut(s)	173
RseI	CAYNNNNRTG	1 cut(s)	132
SaqAI	TTAA	2 cut(s)	300, 345
SatI	GCNGC	1 cut(s)	29
Sau3AI	GATC	1 cut(s)	387
SchI	GAGTC	2 cut(s)	186, 363
ScrFI	CCNGG	2 cut(s)	48, 216
SetI	ASST	8 cut(s)	14, 49, 55, 86, 231, 243, 280, 397
SfaNI	GCATC	2 cut(s)	46, 124
SfcI	CTRYAG	1 cut(s)	441
SmiMI	CAYNNNNRTG	1 cut(s)	132
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
SsiI	CCGC	2 cut(s)	29, 271
SspMI	CTAG	2 cut(s)	182, 279
StyD4I	CCNGG	2 cut(s)	46, 214
TaiI	ACGT	1 cut(s)	14
TaqI	TCGA	1 cut(s)	390
TauI	GCSGC	1 cut(s)	31
Tru1I	TTAA	2 cut(s)	300, 345
Tru9I	TTAA	2 cut(s)	300, 345
TseFI	GTSAC	1 cut(s)	7
Tsp45I	GTSAC	1 cut(s)	7
TspGWI	ACGGA	1 cut(s)	363
XagI	CCTNNNNNAGG	1 cut(s)	213
XmiI	GTMKAC	1 cut(s)	252
XspI	CTAG	2 cut(s)	182, 279
ZraI	GACGTC	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.