RLG00000008916

tRNA (adenine-N6-)-methyltransferase activity

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
42578481 .. 42582002
3522 bp
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UTR
Exon/CDS
Intron
RLM00000008916

Sequence Viewer

Length: 486 bp
ATGGATAGAGAAGAGAAGAGAGGAGAAGAAATTAGAGAAAGGAGGGTGAAGATGTCGTCCACATGTTTGCTACCACCTATCAATGGAGGCCACCTTCTCTTCTCTCTCAATCACCATCGCCTCTCTGCAACTCCCACTCCCTACAAGTGGGGATGGAGAAGATACCAAGGTGGAAACATAGTTGCTTACAGAACCAATAGCCACGCCCTTCAAATGTTGCCCAATCCTAATGCGTCTCAAAAGAAAGGAAATAATGAGGTGATCATGGTTGATCCTTTGGAAGCCAAGCGATTGGCTGCCAAACAAATGGAAGAAATTAAAGCAAAGGAGAACTTCAGGAGAAAACGACAAATAGAAGCAATTAATGGCGCATGGGCGATGATTGGTCTGACAGCAGGCTTGGTTATTGAAGGTCAAACTGGAAAAAGCATTCTTGTTCAGCTGGCTGACTACTGGAGTGCTATTGTCGACTTTTTCATGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

162

Amino Acids

18.36

Weight (kDa)

9.83

Isoelectric Point (pI)

46.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28025 AT4G28025
fragaria_vesca FvH4_4g08570 FvH4_4g08570
malus_domestica MD16G1263600.v1.1
prunus_persica Prupe.1G095600_v2.0.a1
pyrus_communis pycom16g23250
rosa_chinensis RchiOBHm_Chr4g0404651
rosa_laevigata RLG00000008916
rosa_multiflora Rmu_sc0002699.1_g000039
rosa_roxburghii Rroxscaffold_5G00348800
rosa_rugosa Rorug04G0048500
rosa_samantha Rh4AG124200 Rh4BG118300 Rh4CG132300 Rh4DG117300
rosa_wichuraiana Rw4G010070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 468
AclWI GGATC 1 cut(s) 266
AcuI CTGAAG 1 cut(s) 319
AfiI CCNNNNNNNGG 2 cut(s) 83, 147
AflIII ACRYGT 1 cut(s) 62
AgsI TTSAA 2 cut(s) 212, 410
AluBI AGCT 1 cut(s) 442
AluI AGCT 1 cut(s) 442
Alw26I GTCTC 1 cut(s) 240
AlwI GGATC 1 cut(s) 266
AoxI GGCC 1 cut(s) 88
ApeKI GCWGC 1 cut(s) 296
AseI ATTAAT 1 cut(s) 363
AspLEI GCGC 1 cut(s) 371
AsuHPI GGTGA 3 cut(s) 58, 104, 271
BaeI ACNNNNGTAYC 2 cut(s) 154, 187
BbvI GCAGC 1 cut(s) 283
BccI CCATC 2 cut(s) 123, 147
BclI TGATCA 1 cut(s) 261
BcoDI GTCTC 1 cut(s) 240
BfmI CTRYAG 1 cut(s) 482
BisI GCNGC 1 cut(s) 297
BlsI GCNGC 1 cut(s) 298
BpmI CTGGAG 1 cut(s) 475
BsaJI CCNNGG 1 cut(s) 166
BsaXI ACNNNNNCTCC 2 cut(s) 121, 151
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 147
Bse1I ACTGG 2 cut(s) 424, 458
BseDI CCNNGG 1 cut(s) 166
BseGI GGATG 1 cut(s) 158
BseLI CCNNNNNNNGG 2 cut(s) 83, 147
BseNI ACTGG 2 cut(s) 424, 458
BseRI GAGGAG 1 cut(s) 36
BseXI GCAGC 1 cut(s) 283
BshFI GGCC 1 cut(s) 90
BslI CCNNNNNNNGG 2 cut(s) 83, 147
BsmAI GTCTC 1 cut(s) 240
BsmBI CGTCTC 1 cut(s) 240
BsmI GAATGC 1 cut(s) 429
BsnI GGCC 1 cut(s) 90
Bsp143I GATC 2 cut(s) 261, 271
BspANI GGCC 1 cut(s) 90
BspPI GGATC 1 cut(s) 266
BsrI ACTGG 2 cut(s) 424, 458
BssECI CCNNGG 1 cut(s) 166
BssMI GATC 2 cut(s) 261, 271
BssT1I CCWWGG 1 cut(s) 166
Bst6I CTCTTC 3 cut(s) 6, 11, 104
BstC8I GCNNGC 2 cut(s) 397, 444
BstF5I GGATG 1 cut(s) 158
BstHHI GCGC 1 cut(s) 371
BstKTI GATC 2 cut(s) 264, 274
BstMAI GTCTC 1 cut(s) 240
BstMBI GATC 2 cut(s) 261, 271
BstNSI RCATGY 1 cut(s) 66
BstSFI CTRYAG 1 cut(s) 482
BstV1I GCAGC 1 cut(s) 283
BstXI CCANNNNNNTGG 2 cut(s) 292, 307
BsuRI GGCC 1 cut(s) 90
BtgZI GCGATG 2 cut(s) 101, 392
BtsCI GGATG 1 cut(s) 158
Cac8I GCNNGC 2 cut(s) 397, 444
CfoI GCGC 1 cut(s) 371
CseI GACGC 1 cut(s) 222
CviAII CATG 4 cut(s) 63, 265, 372, 478
CviJI RGCY 7 cut(s) 90, 201, 284, 296, 399, 442, 446
CviKI_1 RGCY 7 cut(s) 90, 201, 284, 296, 399, 442, 446
DpnI GATC 2 cut(s) 263, 273
DpnII GATC 2 cut(s) 261, 271
Eam1104I CTCTTC 3 cut(s) 6, 11, 104
EarI CTCTTC 3 cut(s) 6, 11, 104
Eco130I CCWWGG 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 319
EcoT14I CCWWGG 1 cut(s) 166
ErhI CCWWGG 1 cut(s) 166
Esp3I CGTCTC 1 cut(s) 240
FaeI CATG 4 cut(s) 66, 268, 375, 481
FaiI YATR 6 cut(s) 64, 179, 266, 373, 479, 484
FalI AAGNNNNNCTT 2 cut(s) 317, 349
FatI CATG 4 cut(s) 62, 264, 371, 477
FbaI TGATCA 1 cut(s) 261
FblI GTMKAC 1 cut(s) 468
Fnu4HI GCNGC 1 cut(s) 297
FokI GGATG 1 cut(s) 165
Fsp4HI GCNGC 1 cut(s) 297
GlaI GCGC 1 cut(s) 370
GluI GCNGC 1 cut(s) 297
GsuI CTGGAG 1 cut(s) 475
HaeIII GGCC 1 cut(s) 90
HgaI GACGC 1 cut(s) 222
HhaI GCGC 1 cut(s) 371
Hin1II CATG 4 cut(s) 66, 268, 375, 481
Hin6I GCGC 1 cut(s) 369
HinP1I GCGC 1 cut(s) 369
HincII GTYRAC 1 cut(s) 469
HindII GTYRAC 1 cut(s) 469
HphI GGTGA 3 cut(s) 58, 104, 271
Hpy166II GTNNAC 2 cut(s) 60, 469
Hpy188I TCNGA 1 cut(s) 390
Hpy188III TCNNGA 1 cut(s) 337
Hpy8I GTNNAC 2 cut(s) 60, 469
HpyAV CCTTC 3 cut(s) 104, 218, 404
HpyCH4V TGCA 1 cut(s) 128
Hsp92II CATG 4 cut(s) 66, 268, 375, 481
HspAI GCGC 1 cut(s) 369
Ksp22I TGATCA 1 cut(s) 261
Kzo9I GATC 2 cut(s) 261, 271
LpnPI CCDG 5 cut(s) 322, 381, 405, 428, 439
Lsp1109I GCAGC 1 cut(s) 283
MalI GATC 2 cut(s) 263, 273
MboI GATC 2 cut(s) 261, 271
MboII GAAGA 7 cut(s) 23, 28, 38, 61, 91, 171, 323
MluCI AATT 3 cut(s) 30, 315, 360
MnlI CCTC 5 cut(s) 14, 36, 80, 131, 250
MseI TTAA 2 cut(s) 318, 363
MspA1I CMGCKG 1 cut(s) 442
Mva1269I GAATGC 1 cut(s) 429
NdeII GATC 2 cut(s) 261, 271
NlaIII CATG 4 cut(s) 66, 268, 375, 481
NspI RCATGY 1 cut(s) 66
PciI ACATGT 1 cut(s) 62
PctI GAATGC 1 cut(s) 429
PkrI GCNGC 1 cut(s) 298
PscI ACATGT 1 cut(s) 62
PshBI ATTAAT 1 cut(s) 363
PvuII CAGCTG 1 cut(s) 442
SalI GTCGAC 1 cut(s) 467
SaqAI TTAA 2 cut(s) 318, 363
SatI GCNGC 1 cut(s) 297
Sau3AI GATC 2 cut(s) 261, 271
SetI ASST 6 cut(s) 79, 96, 172, 261, 415, 444
SfcI CTRYAG 1 cut(s) 482
Sse9I AATT 3 cut(s) 30, 315, 360
StyI CCWWGG 1 cut(s) 166
TaqI TCGA 1 cut(s) 468
TasI AATT 3 cut(s) 30, 315, 360
Tru1I TTAA 2 cut(s) 318, 363
Tru9I TTAA 2 cut(s) 318, 363
TseI GCWGC 1 cut(s) 296
TspDTI ATGAA 1 cut(s) 466
VspI ATTAAT 1 cut(s) 363
XceI RCATGY 1 cut(s) 66
XmiI GTMKAC 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.