Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0014478

Physical Location & Seq

Genomic Coordinates Reverse (-)

26155457 .. 26159092

Gene Structure 3636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG132300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGTCGTCCACATGTTTGCTACCACCTATCAATGGAGGCCACCTTCTCTTCTCTCTCAATCACCATCGCCTCTCTGCAACTCCCACTCCCTACAAGTGGGGATGGAGAAGATACCAAGGTGGAAACATAGTTGCTTACAGAACCAATGGCCACGCCCTTCAAATGTTGCCCAATCCTAATGCATCTCAAAAGAAAGGAAATAATGAGGTGATCATGGTTGATCCTTTGGAAGCCAAGCGATTGGCTGCCAAACAAATGGAAGAAATTAAAGCAAAGGAGAACTTCAGGAGAAAACGACAAATAGAAGCAATTAATGGCGCATGGGCGATGATTGGTCTGACAGCAGGCTTGGTTATTGAAGGTCAAACTGGAAAAAGCATTCTTGTTCAGCTGGCTGACTACTGGAGTGCTATTGTCGACTTTTTCATGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

144

Amino Acids

16.13

Weight (kDa)

9.81

Isoelectric Point (pI)

37.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28025 AT4G28025
fragaria_vesca	FvH4_4g08570 FvH4_4g08570
malus_domestica	MD16G1263600.v1.1
prunus_persica	Prupe.1G095600_v2.0.a1
pyrus_communis	pycom16g23250
rosa_chinensis	RchiOBHm_Chr4g0404651
rosa_laevigata	RLG00000008916
rosa_multiflora	Rmu_sc0002699.1_g000039
rosa_roxburghii	Rroxscaffold_5G00348800
rosa_rugosa	Rorug04G0048500
rosa_samantha	Rh4AG124200 Rh4BG118300 Rh4CG132300 Rh4DG117300
rosa_wichuraiana	Rw4G010070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	417
AclWI	GGATC	1 cut(s)	215
AcoI	YGGCCR	1 cut(s)	148
AcuI	CTGAAG	1 cut(s)	268
AfiI	CCNNNNNNNGG	2 cut(s)	32, 96
AflIII	ACRYGT	1 cut(s)	11
AgsI	TTSAA	2 cut(s)	161, 359
AluBI	AGCT	1 cut(s)	391
AluI	AGCT	1 cut(s)	391
AlwI	GGATC	1 cut(s)	215
AoxI	GGCC	2 cut(s)	37, 148
ApeKI	GCWGC	1 cut(s)	245
AseI	ATTAAT	1 cut(s)	312
AspLEI	GCGC	1 cut(s)	320
AsuHPI	GGTGA	2 cut(s)	53, 220
BaeI	ACNNNNGTAYC	2 cut(s)	103, 136
BalI	TGGCCA	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	232
BccI	CCATC	2 cut(s)	72, 96
BclI	TGATCA	1 cut(s)	210
BfmI	CTRYAG	1 cut(s)	431
BisI	GCNGC	1 cut(s)	246
BlsI	GCNGC	1 cut(s)	247
BmsI	GCATC	1 cut(s)	191
BpmI	CTGGAG	1 cut(s)	424
BsaJI	CCNNGG	1 cut(s)	115
BsaXI	ACNNNNNCTCC	2 cut(s)	70, 100
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 96
Bse1I	ACTGG	2 cut(s)	373, 407
BseDI	CCNNGG	1 cut(s)	115
BseGI	GGATG	1 cut(s)	107
BseLI	CCNNNNNNNGG	2 cut(s)	32, 96
BseNI	ACTGG	2 cut(s)	373, 407
BseXI	GCAGC	1 cut(s)	232
BshFI	GGCC	2 cut(s)	39, 150
BslI	CCNNNNNNNGG	2 cut(s)	32, 96
BsmI	GAATGC	1 cut(s)	378
BsnI	GGCC	2 cut(s)	39, 150
Bsp143I	GATC	2 cut(s)	210, 220
BspANI	GGCC	2 cut(s)	39, 150
BspPI	GGATC	1 cut(s)	215
BsrI	ACTGG	2 cut(s)	373, 407
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	2 cut(s)	210, 220
BssT1I	CCWWGG	1 cut(s)	115
Bst6I	CTCTTC	1 cut(s)	53
BstC8I	GCNNGC	2 cut(s)	346, 393
BstF5I	GGATG	1 cut(s)	107
BstHHI	GCGC	1 cut(s)	320
BstKTI	GATC	2 cut(s)	213, 223
BstMBI	GATC	2 cut(s)	210, 220
BstNSI	RCATGY	1 cut(s)	15
BstSFI	CTRYAG	1 cut(s)	431
BstV1I	GCAGC	1 cut(s)	232
BstXI	CCANNNNNNTGG	2 cut(s)	241, 256
BsuRI	GGCC	2 cut(s)	39, 150
BtgZI	GCGATG	2 cut(s)	50, 341
BtsCI	GGATG	1 cut(s)	107
Cac8I	GCNNGC	2 cut(s)	346, 393
CfoI	GCGC	1 cut(s)	320
CviAII	CATG	4 cut(s)	12, 214, 321, 427
CviJI	RGCY	7 cut(s)	39, 150, 233, 245, 348, 391, 395
CviKI_1	RGCY	7 cut(s)	39, 150, 233, 245, 348, 391, 395
DpnI	GATC	2 cut(s)	212, 222
DpnII	GATC	2 cut(s)	210, 220
EaeI	YGGCCR	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	268
EcoT14I	CCWWGG	1 cut(s)	115
EcoT22I	ATGCAT	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	4 cut(s)	15, 217, 324, 430
FaiI	YATR	6 cut(s)	13, 128, 215, 322, 428, 433
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FatI	CATG	4 cut(s)	11, 213, 320, 426
FbaI	TGATCA	1 cut(s)	210
FblI	GTMKAC	1 cut(s)	417
Fnu4HI	GCNGC	1 cut(s)	246
FokI	GGATG	1 cut(s)	114
Fsp4HI	GCNGC	1 cut(s)	246
GlaI	GCGC	1 cut(s)	319
GluI	GCNGC	1 cut(s)	246
GsuI	CTGGAG	1 cut(s)	424
HaeIII	GGCC	2 cut(s)	39, 150
HhaI	GCGC	1 cut(s)	320
Hin1II	CATG	4 cut(s)	15, 217, 324, 430
Hin6I	GCGC	1 cut(s)	318
HinP1I	GCGC	1 cut(s)	318
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HphI	GGTGA	2 cut(s)	53, 220
Hpy166II	GTNNAC	2 cut(s)	9, 418
Hpy188I	TCNGA	1 cut(s)	339
Hpy188III	TCNNGA	1 cut(s)	286
Hpy8I	GTNNAC	2 cut(s)	9, 418
HpyAV	CCTTC	3 cut(s)	53, 167, 353
HpyCH4V	TGCA	2 cut(s)	77, 182
Hsp92II	CATG	4 cut(s)	15, 217, 324, 430
HspAI	GCGC	1 cut(s)	318
Ksp22I	TGATCA	1 cut(s)	210
Kzo9I	GATC	2 cut(s)	210, 220
LpnPI	CCDG	5 cut(s)	271, 330, 354, 377, 388
Lsp1109I	GCAGC	1 cut(s)	232
LweI	GCATC	1 cut(s)	191
MalI	GATC	2 cut(s)	212, 222
MboI	GATC	2 cut(s)	210, 220
MboII	GAAGA	3 cut(s)	40, 120, 272
MlsI	TGGCCA	1 cut(s)	150
MluCI	AATT	2 cut(s)	264, 309
MluNI	TGGCCA	1 cut(s)	150
MnlI	CCTC	3 cut(s)	29, 80, 199
Mox20I	TGGCCA	1 cut(s)	150
Mph1103I	ATGCAT	1 cut(s)	184
MscI	TGGCCA	1 cut(s)	150
MseI	TTAA	2 cut(s)	267, 312
Msp20I	TGGCCA	1 cut(s)	150
MspA1I	CMGCKG	1 cut(s)	391
Mva1269I	GAATGC	1 cut(s)	378
NdeII	GATC	2 cut(s)	210, 220
NlaIII	CATG	4 cut(s)	15, 217, 324, 430
NsiI	ATGCAT	1 cut(s)	184
NspI	RCATGY	1 cut(s)	15
PciI	ACATGT	1 cut(s)	11
PctI	GAATGC	1 cut(s)	378
PkrI	GCNGC	1 cut(s)	247
PscI	ACATGT	1 cut(s)	11
PshBI	ATTAAT	1 cut(s)	312
PvuII	CAGCTG	1 cut(s)	391
SalI	GTCGAC	1 cut(s)	416
SaqAI	TTAA	2 cut(s)	267, 312
SatI	GCNGC	1 cut(s)	246
Sau3AI	GATC	2 cut(s)	210, 220
SetI	ASST	6 cut(s)	28, 45, 121, 210, 364, 393
SfaNI	GCATC	1 cut(s)	191
SfcI	CTRYAG	1 cut(s)	431
Sse9I	AATT	2 cut(s)	264, 309
StyI	CCWWGG	1 cut(s)	115
TaqI	TCGA	1 cut(s)	417
TasI	AATT	2 cut(s)	264, 309
Tru1I	TTAA	2 cut(s)	267, 312
Tru9I	TTAA	2 cut(s)	267, 312
TseI	GCWGC	1 cut(s)	245
TspDTI	ATGAA	1 cut(s)	415
VspI	ATTAAT	1 cut(s)	312
XceI	RCATGY	1 cut(s)	15
XmiI	GTMKAC	1 cut(s)	417
Zsp2I	ATGCAT	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.