Rmu_sc0002699.1_g000039

tRNA (adenine-N6-)-methyltransferase activity

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002699.1
Physical Location & Seq
Reverse (-)
161771 .. 165306
3536 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002699.1_g000039.1.cds

Sequence Viewer

Length: 489 bp
atggatagagaagagaagaggagaggagaagaaattagagaaaggggggtgaagatgtcgtccacatgtttgctaccacctatcaatggaggccaccttctcttctctctcaatcaccatcgcctctctgcaactcccactccctacaagtggggatggagaagataccaaggtggaaacatagttgcttacagaaccaatggccacgcccttcaaatgttgcccaatcctaatgcatctcaaaagaaaggaaataatgaggtgatcatggttgatcctttggaagccaagcgattggctgccaaacaaatggaagaaattaaagcaaaggagaacttcaggagaaaacgacaaatagaagcaattaatggcgcatgggcgatgattggtctgacagcaggcttggttattgaaggtcaaactggaaaaagcattcttgttcagctggctgactactggagtgctattgtcaactttttcatgctatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

162

Amino Acids

18.39

Weight (kDa)

9.94

Isoelectric Point (pI)

45.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28025 AT4G28025
fragaria_vesca FvH4_4g08570 FvH4_4g08570
malus_domestica MD16G1263600.v1.1
prunus_persica Prupe.1G095600_v2.0.a1
pyrus_communis pycom16g23250
rosa_chinensis RchiOBHm_Chr4g0404651
rosa_laevigata RLG00000008916
rosa_multiflora Rmu_sc0002699.1_g000039
rosa_roxburghii Rroxscaffold_5G00348800
rosa_rugosa Rorug04G0048500
rosa_samantha Rh4AG124200 Rh4BG118300 Rh4CG132300 Rh4DG117300
rosa_wichuraiana Rw4G010070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 269
AcoI YGGCCR 1 cut(s) 202
AcuI CTGAAG 1 cut(s) 322
AfiI CCNNNNNNNGG 2 cut(s) 86, 150
AflIII ACRYGT 1 cut(s) 65
AgsI TTSAA 2 cut(s) 215, 413
AluBI AGCT 1 cut(s) 445
AluI AGCT 1 cut(s) 445
AlwI GGATC 1 cut(s) 269
AoxI GGCC 2 cut(s) 91, 202
ApeKI GCWGC 1 cut(s) 299
AseI ATTAAT 1 cut(s) 366
AspLEI GCGC 1 cut(s) 374
AsuHPI GGTGA 3 cut(s) 61, 107, 274
BaeI ACNNNNGTAYC 2 cut(s) 157, 190
BalI TGGCCA 1 cut(s) 204
BbvI GCAGC 1 cut(s) 286
BccI CCATC 2 cut(s) 126, 150
BclI TGATCA 1 cut(s) 264
BfmI CTRYAG 1 cut(s) 485
BisI GCNGC 1 cut(s) 300
BlsI GCNGC 1 cut(s) 301
BmsI GCATC 1 cut(s) 245
BpmI CTGGAG 1 cut(s) 478
BsaJI CCNNGG 1 cut(s) 169
BsaXI ACNNNNNCTCC 2 cut(s) 124, 154
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 150
Bse1I ACTGG 2 cut(s) 427, 461
BseDI CCNNGG 1 cut(s) 169
BseGI GGATG 1 cut(s) 161
BseLI CCNNNNNNNGG 2 cut(s) 86, 150
BseNI ACTGG 2 cut(s) 427, 461
BseRI GAGGAG 2 cut(s) 34, 39
BseXI GCAGC 1 cut(s) 286
BshFI GGCC 2 cut(s) 93, 204
BslI CCNNNNNNNGG 2 cut(s) 86, 150
BsmI GAATGC 1 cut(s) 432
BsnI GGCC 2 cut(s) 93, 204
Bsp143I GATC 2 cut(s) 264, 274
BspANI GGCC 2 cut(s) 93, 204
BspPI GGATC 1 cut(s) 269
BsrI ACTGG 2 cut(s) 427, 461
BssECI CCNNGG 1 cut(s) 169
BssMI GATC 2 cut(s) 264, 274
BssT1I CCWWGG 1 cut(s) 169
Bst6I CTCTTC 3 cut(s) 6, 11, 107
BstC8I GCNNGC 2 cut(s) 400, 447
BstF5I GGATG 1 cut(s) 161
BstHHI GCGC 1 cut(s) 374
BstKTI GATC 2 cut(s) 267, 277
BstMBI GATC 2 cut(s) 264, 274
BstNSI RCATGY 1 cut(s) 69
BstSFI CTRYAG 1 cut(s) 485
BstV1I GCAGC 1 cut(s) 286
BstXI CCANNNNNNTGG 2 cut(s) 295, 310
BsuRI GGCC 2 cut(s) 93, 204
BtgZI GCGATG 2 cut(s) 104, 395
BtsCI GGATG 1 cut(s) 161
Cac8I GCNNGC 2 cut(s) 400, 447
CfoI GCGC 1 cut(s) 374
CviAII CATG 4 cut(s) 66, 268, 375, 481
CviJI RGCY 7 cut(s) 93, 204, 287, 299, 402, 445, 449
CviKI_1 RGCY 7 cut(s) 93, 204, 287, 299, 402, 445, 449
DpnI GATC 2 cut(s) 266, 276
DpnII GATC 2 cut(s) 264, 274
EaeI YGGCCR 1 cut(s) 202
Eam1104I CTCTTC 3 cut(s) 6, 11, 107
EarI CTCTTC 3 cut(s) 6, 11, 107
Eco130I CCWWGG 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 322
EcoT14I CCWWGG 1 cut(s) 169
EcoT22I ATGCAT 1 cut(s) 238
ErhI CCWWGG 1 cut(s) 169
FaeI CATG 4 cut(s) 69, 271, 378, 484
FaiI YATR 6 cut(s) 67, 182, 269, 376, 482, 487
FalI AAGNNNNNCTT 2 cut(s) 320, 352
FatI CATG 4 cut(s) 65, 267, 374, 480
FbaI TGATCA 1 cut(s) 264
Fnu4HI GCNGC 1 cut(s) 300
FokI GGATG 1 cut(s) 168
Fsp4HI GCNGC 1 cut(s) 300
GlaI GCGC 1 cut(s) 373
GluI GCNGC 1 cut(s) 300
GsuI CTGGAG 1 cut(s) 478
HaeIII GGCC 2 cut(s) 93, 204
HhaI GCGC 1 cut(s) 374
Hin1II CATG 4 cut(s) 69, 271, 378, 484
Hin6I GCGC 1 cut(s) 372
HinP1I GCGC 1 cut(s) 372
HincII GTYRAC 1 cut(s) 472
HindII GTYRAC 1 cut(s) 472
HphI GGTGA 3 cut(s) 61, 107, 274
Hpy166II GTNNAC 2 cut(s) 63, 472
Hpy188I TCNGA 1 cut(s) 393
Hpy188III TCNNGA 1 cut(s) 340
Hpy8I GTNNAC 2 cut(s) 63, 472
HpyAV CCTTC 3 cut(s) 107, 221, 407
HpyCH4V TGCA 2 cut(s) 131, 236
Hsp92II CATG 4 cut(s) 69, 271, 378, 484
HspAI GCGC 1 cut(s) 372
Ksp22I TGATCA 1 cut(s) 264
Kzo9I GATC 2 cut(s) 264, 274
LpnPI CCDG 5 cut(s) 325, 384, 408, 431, 442
Lsp1109I GCAGC 1 cut(s) 286
LweI GCATC 1 cut(s) 245
MalI GATC 2 cut(s) 266, 276
MboI GATC 2 cut(s) 264, 274
MboII GAAGA 7 cut(s) 23, 28, 41, 64, 94, 174, 326
MlsI TGGCCA 1 cut(s) 204
MluCI AATT 3 cut(s) 33, 318, 363
MluNI TGGCCA 1 cut(s) 204
MnlI CCTC 5 cut(s) 12, 17, 83, 134, 253
Mox20I TGGCCA 1 cut(s) 204
Mph1103I ATGCAT 1 cut(s) 238
MscI TGGCCA 1 cut(s) 204
MseI TTAA 2 cut(s) 321, 366
Msp20I TGGCCA 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 445
Mva1269I GAATGC 1 cut(s) 432
NdeII GATC 2 cut(s) 264, 274
NlaIII CATG 4 cut(s) 69, 271, 378, 484
NsiI ATGCAT 1 cut(s) 238
NspI RCATGY 1 cut(s) 69
PciI ACATGT 1 cut(s) 65
PctI GAATGC 1 cut(s) 432
PkrI GCNGC 1 cut(s) 301
PscI ACATGT 1 cut(s) 65
PshBI ATTAAT 1 cut(s) 366
PvuII CAGCTG 1 cut(s) 445
SaqAI TTAA 2 cut(s) 321, 366
SatI GCNGC 1 cut(s) 300
Sau3AI GATC 2 cut(s) 264, 274
SetI ASST 6 cut(s) 82, 99, 175, 264, 418, 447
SfaNI GCATC 1 cut(s) 245
SfcI CTRYAG 1 cut(s) 485
Sse9I AATT 3 cut(s) 33, 318, 363
StyI CCWWGG 1 cut(s) 169
TasI AATT 3 cut(s) 33, 318, 363
Tru1I TTAA 2 cut(s) 321, 366
Tru9I TTAA 2 cut(s) 321, 366
TseI GCWGC 1 cut(s) 299
TspDTI ATGAA 1 cut(s) 469
VspI ATTAAT 1 cut(s) 366
XceI RCATGY 1 cut(s) 69
Zsp2I ATGCAT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.