FvH4_4g08570

tRNA (adenine-N6-)-methyltransferase activity

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
8767058 .. 8770499
3442 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g08570.t2

Sequence Viewer

Length: 450 bp
ATGCCGTCCACATCTTTCCTACCACCTATCAATGGAGGCCACCTTCTCTTCCCTCCCACTTCTTCCTCTCTCAATCACCATCATCTCTCTGCAGTTCCCACTCCCTACATGTGGGGATGGAGGAAATACCAAGGTGGAAACATAGTTGCTTTCAGAACCAATGGCCACGCCCTTCAAATGTTGCCCAATCCTAATGCATCTCCAAAGAAAGGAAATACTGAGGTGATCATGGTTGATCCTTTGGAAGCCAAGCGATTGGCTGCCAAACAAATGGAAGAAATCAAAGCAAAAGAGAACTTCAAGAGAAAACGACAAATTGAAGCAATTAATGGCGCATGGGCGATGATTGGTCTTACAGTAGGCTTGGTTATTGAAGGTCAAACAGGAAAAAGCATTCATGTTCAGCTGGCTGACTACTGGAGTGCTATTGTCGACTTTTTCATGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

150

Amino Acids

16.55

Weight (kDa)

9.64

Isoelectric Point (pI)

40.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28025 AT4G28025
fragaria_vesca FvH4_4g08570 FvH4_4g08570
malus_domestica MD16G1263600.v1.1
prunus_persica Prupe.1G095600_v2.0.a1
pyrus_communis pycom16g23250
rosa_chinensis RchiOBHm_Chr4g0404651
rosa_laevigata RLG00000008916
rosa_multiflora Rmu_sc0002699.1_g000039
rosa_roxburghii Rroxscaffold_5G00348800
rosa_rugosa Rorug04G0048500
rosa_samantha Rh4AG124200 Rh4BG118300 Rh4CG132300 Rh4DG117300
rosa_wichuraiana Rw4G010070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 432
AclWI GGATC 1 cut(s) 230
AcoI YGGCCR 1 cut(s) 163
AfiI CCNNNNNNNGG 3 cut(s) 32, 111, 209
AflIII ACRYGT 1 cut(s) 108
AgsI TTSAA 4 cut(s) 176, 301, 320, 374
AluBI AGCT 1 cut(s) 406
AluI AGCT 1 cut(s) 406
AlwI GGATC 1 cut(s) 230
AoxI GGCC 2 cut(s) 37, 163
ApeKI GCWGC 1 cut(s) 260
AseI ATTAAT 1 cut(s) 327
AspLEI GCGC 1 cut(s) 335
AsuHPI GGTGA 2 cut(s) 68, 235
BalI TGGCCA 1 cut(s) 165
BbvI GCAGC 1 cut(s) 247
BccI CCATC 2 cut(s) 87, 111
BclI TGATCA 1 cut(s) 225
BfmI CTRYAG 2 cut(s) 90, 446
BisI GCNGC 1 cut(s) 261
BlsI GCNGC 1 cut(s) 262
BmsI GCATC 1 cut(s) 206
BpmI CTGGAG 1 cut(s) 439
BsaJI CCNNGG 1 cut(s) 130
Bsc4I CCNNNNNNNGG 3 cut(s) 32, 111, 209
Bse1I ACTGG 1 cut(s) 422
BseDI CCNNGG 1 cut(s) 130
BseGI GGATG 1 cut(s) 122
BseLI CCNNNNNNNGG 3 cut(s) 32, 111, 209
BseMII CTCAG 1 cut(s) 210
BseNI ACTGG 1 cut(s) 422
BseXI GCAGC 1 cut(s) 247
BshFI GGCC 2 cut(s) 39, 165
BslI CCNNNNNNNGG 3 cut(s) 32, 111, 209
BsmI GAATGC 1 cut(s) 393
BsnI GGCC 2 cut(s) 39, 165
Bsp143I GATC 2 cut(s) 225, 235
BspANI GGCC 2 cut(s) 39, 165
BspCNI CTCAG 1 cut(s) 211
BspMAI CTGCAG 1 cut(s) 94
BspPI GGATC 1 cut(s) 230
BsrI ACTGG 1 cut(s) 422
BssECI CCNNGG 1 cut(s) 130
BssMI GATC 2 cut(s) 225, 235
BssT1I CCWWGG 1 cut(s) 130
Bst4CI ACNGT 1 cut(s) 358
Bst6I CTCTTC 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 408
BstDEI CTNAG 1 cut(s) 219
BstF5I GGATG 1 cut(s) 122
BstHHI GCGC 1 cut(s) 335
BstKTI GATC 2 cut(s) 228, 238
BstMBI GATC 2 cut(s) 225, 235
BstNSI RCATGY 1 cut(s) 112
BstSFI CTRYAG 2 cut(s) 90, 446
BstV1I GCAGC 1 cut(s) 247
BstXI CCANNNNNNTGG 2 cut(s) 256, 271
BsuRI GGCC 2 cut(s) 39, 165
BtgZI GCGATG 1 cut(s) 356
BtsCI GGATG 1 cut(s) 122
Cac8I GCNNGC 1 cut(s) 408
CfoI GCGC 1 cut(s) 335
CviAII CATG 5 cut(s) 109, 229, 336, 398, 442
CviJI RGCY 7 cut(s) 39, 165, 248, 260, 363, 406, 410
CviKI_1 RGCY 7 cut(s) 39, 165, 248, 260, 363, 406, 410
DdeI CTNAG 1 cut(s) 219
DpnI GATC 2 cut(s) 227, 237
DpnII GATC 2 cut(s) 225, 235
EaeI YGGCCR 1 cut(s) 163
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 130
EcoT22I ATGCAT 1 cut(s) 199
ErhI CCWWGG 1 cut(s) 130
FaeI CATG 5 cut(s) 112, 232, 339, 401, 445
FaiI YATR 7 cut(s) 110, 143, 230, 337, 399, 443, 448
FatI CATG 5 cut(s) 108, 228, 335, 397, 441
FbaI TGATCA 1 cut(s) 225
FblI GTMKAC 1 cut(s) 432
Fnu4HI GCNGC 1 cut(s) 261
FokI GGATG 1 cut(s) 129
Fsp4HI GCNGC 1 cut(s) 261
GlaI GCGC 1 cut(s) 334
GluI GCNGC 1 cut(s) 261
GsuI CTGGAG 1 cut(s) 439
HaeIII GGCC 2 cut(s) 39, 165
HhaI GCGC 1 cut(s) 335
Hin1II CATG 5 cut(s) 112, 232, 339, 401, 445
Hin6I GCGC 1 cut(s) 333
HinP1I GCGC 1 cut(s) 333
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HphI GGTGA 2 cut(s) 68, 235
Hpy166II GTNNAC 2 cut(s) 9, 433
Hpy188I TCNGA 1 cut(s) 155
Hpy188III TCNNGA 1 cut(s) 301
Hpy8I GTNNAC 2 cut(s) 9, 433
HpyAV CCTTC 3 cut(s) 53, 182, 368
HpyCH4III ACNGT 1 cut(s) 358
HpyCH4V TGCA 2 cut(s) 92, 197
HpyF3I CTNAG 1 cut(s) 219
Hsp92II CATG 5 cut(s) 112, 232, 339, 401, 445
HspAI GCGC 1 cut(s) 333
Ksp22I TGATCA 1 cut(s) 225
Kzo9I GATC 2 cut(s) 225, 235
LpnPI CCDG 3 cut(s) 369, 392, 403
Lsp1109I GCAGC 1 cut(s) 247
LweI GCATC 1 cut(s) 206
MalI GATC 2 cut(s) 227, 237
MboI GATC 2 cut(s) 225, 235
MboII GAAGA 3 cut(s) 40, 54, 287
MlsI TGGCCA 1 cut(s) 165
MluCI AATT 2 cut(s) 315, 324
MluNI TGGCCA 1 cut(s) 165
MnlI CCTC 5 cut(s) 29, 63, 76, 114, 214
Mox20I TGGCCA 1 cut(s) 165
Mph1103I ATGCAT 1 cut(s) 199
MscI TGGCCA 1 cut(s) 165
MseI TTAA 1 cut(s) 327
Msp20I TGGCCA 1 cut(s) 165
MspA1I CMGCKG 1 cut(s) 406
Mva1269I GAATGC 1 cut(s) 393
NdeII GATC 2 cut(s) 225, 235
NlaIII CATG 5 cut(s) 112, 232, 339, 401, 445
NsiI ATGCAT 1 cut(s) 199
NspI RCATGY 1 cut(s) 112
PciI ACATGT 1 cut(s) 108
PctI GAATGC 1 cut(s) 393
PkrI GCNGC 1 cut(s) 262
PscI ACATGT 1 cut(s) 108
PshBI ATTAAT 1 cut(s) 327
PstI CTGCAG 1 cut(s) 94
PvuII CAGCTG 1 cut(s) 406
SalI GTCGAC 1 cut(s) 431
SaqAI TTAA 1 cut(s) 327
SatI GCNGC 1 cut(s) 261
Sau3AI GATC 2 cut(s) 225, 235
SetI ASST 6 cut(s) 28, 45, 136, 225, 379, 408
SfaNI GCATC 1 cut(s) 206
SfcI CTRYAG 2 cut(s) 90, 446
Sse9I AATT 2 cut(s) 315, 324
StyI CCWWGG 1 cut(s) 130
TaaI ACNGT 1 cut(s) 358
TaqI TCGA 1 cut(s) 432
TasI AATT 2 cut(s) 315, 324
Tru1I TTAA 1 cut(s) 327
Tru9I TTAA 1 cut(s) 327
TseI GCWGC 1 cut(s) 260
TspDTI ATGAA 2 cut(s) 386, 430
VspI ATTAAT 1 cut(s) 327
XceI RCATGY 1 cut(s) 112
XmiI GTMKAC 1 cut(s) 432
Zsp2I ATGCAT 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.