Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0014478

Physical Location & Seq

Genomic Coordinates Reverse (-)

21289347 .. 21292700

Gene Structure 3354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00348800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGATATGGCTGGGCAAGAATGCTGATAGAGATTCTGTCTCACCAGGATCGCGTTATTCATCAGTGGTTGGGGATCTGACTGAGTACTGCCAGTTAGTGAAGTTATATCTTTACTGGCTGTCTCTTAAGTGGGGATGGAGAAGATACCAAGGTGGAAACATAGTTGCGTACAGAACCAATAGCCACGCCCTTCAAATGTTGTCCAATCCTAATGCGTCTCAAAAGAAAGGAAATAATGAGGTGATCATGGTTGATCCTTTGGAAGCCAAGCGATTGGCTGCCAAACAAATGGAAGAAATTAAAGCGAAGGAGAAATTCAGGAGAAAACGACAAATAGAAGCAATTAATGGCGCATGGGCGATGATTGGTCTGACAGTAGGCTTGGTTATTGAAGGTCAAACTGGAAAAAGCATTCTTGTTCAGCTGGCTGACTACTGGAGTGCTATTGTCGACTTTTTCATGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

155

Amino Acids

17.65

Weight (kDa)

9.57

Isoelectric Point (pI)

32.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28025 AT4G28025
fragaria_vesca	FvH4_4g08570 FvH4_4g08570
malus_domestica	MD16G1263600.v1.1
prunus_persica	Prupe.1G095600_v2.0.a1
pyrus_communis	pycom16g23250
rosa_chinensis	RchiOBHm_Chr4g0404651
rosa_laevigata	RLG00000008916
rosa_multiflora	Rmu_sc0002699.1_g000039
rosa_roxburghii	Rroxscaffold_5G00348800
rosa_rugosa	Rorug04G0048500
rosa_samantha	Rh4AG124200 Rh4BG118300 Rh4CG132300 Rh4DG117300
rosa_wichuraiana	Rw4G010070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	450
AccII	CGCG	1 cut(s)	52
AclWI	GGATC	3 cut(s)	55, 81, 248
AcsI	RAATTY	1 cut(s)	314
AfaI	GTAC	2 cut(s)	86, 170
AflII	CTTAAG	1 cut(s)	125
AgsI	TTSAA	2 cut(s)	194, 392
AjnI	CCWGG	1 cut(s)	43
AluBI	AGCT	1 cut(s)	424
AluI	AGCT	1 cut(s)	424
Alw26I	GTCTC	3 cut(s)	43, 126, 222
AlwI	GGATC	3 cut(s)	55, 81, 248
ApeKI	GCWGC	1 cut(s)	278
ApoI	RAATTY	1 cut(s)	314
AseI	ATTAAT	1 cut(s)	345
AspLEI	GCGC	1 cut(s)	353
AsuHPI	GGTGA	2 cut(s)	33, 253
BaeI	ACNNNNGTAYC	2 cut(s)	136, 169
BbvI	GCAGC	1 cut(s)	265
BccI	CCATC	1 cut(s)	129
BciT130I	CCWGG	1 cut(s)	45
BclI	TGATCA	1 cut(s)	243
BcoDI	GTCTC	3 cut(s)	43, 126, 222
BfmI	CTRYAG	1 cut(s)	464
BfrI	CTTAAG	1 cut(s)	125
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
BmcAI	AGTACT	1 cut(s)	86
Bme1390I	CCNGG	1 cut(s)	45
BmrFI	CCNGG	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	457
BsaJI	CCNNGG	1 cut(s)	148
Bse1I	ACTGG	4 cut(s)	91, 119, 406, 440
BseBI	CCWGG	1 cut(s)	45
BseDI	CCNNGG	1 cut(s)	148
BseGI	GGATG	1 cut(s)	140
BseMII	CTCAG	1 cut(s)	72
BseNI	ACTGG	4 cut(s)	91, 119, 406, 440
BseXI	GCAGC	1 cut(s)	265
BseYI	CCCAGC	1 cut(s)	10
Bsh1236I	CGCG	1 cut(s)	52
BsmAI	GTCTC	3 cut(s)	43, 126, 222
BsmBI	CGTCTC	1 cut(s)	222
BsmI	GAATGC	2 cut(s)	25, 411
Bsp143I	GATC	4 cut(s)	47, 73, 243, 253
BspCNI	CTCAG	1 cut(s)	73
BspFNI	CGCG	1 cut(s)	52
BspPI	GGATC	3 cut(s)	55, 81, 248
BspTI	CTTAAG	1 cut(s)	125
BsrI	ACTGG	4 cut(s)	91, 119, 406, 440
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	4 cut(s)	47, 73, 243, 253
BssT1I	CCWWGG	1 cut(s)	148
Bst2UI	CCWGG	1 cut(s)	45
Bst4CI	ACNGT	1 cut(s)	376
BstAFI	CTTAAG	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	426
BstDEI	CTNAG	1 cut(s)	81
BstF5I	GGATG	1 cut(s)	140
BstFNI	CGCG	1 cut(s)	52
BstHHI	GCGC	1 cut(s)	353
BstKTI	GATC	4 cut(s)	50, 76, 246, 256
BstMAI	GTCTC	3 cut(s)	43, 126, 222
BstMBI	GATC	4 cut(s)	47, 73, 243, 253
BstNI	CCWGG	1 cut(s)	45
BstSCI	CCNGG	1 cut(s)	43
BstSFI	CTRYAG	1 cut(s)	464
BstUI	CGCG	1 cut(s)	52
BstV1I	GCAGC	1 cut(s)	265
BstX2I	RGATCY	1 cut(s)	73
BstXI	CCANNNNNNTGG	2 cut(s)	274, 289
BstYI	RGATCY	1 cut(s)	73
BtgZI	GCGATG	1 cut(s)	374
BtsCI	GGATG	1 cut(s)	140
BtsIMutI	CAGTG	1 cut(s)	69
Cac8I	GCNNGC	1 cut(s)	426
CfoI	GCGC	1 cut(s)	353
CseI	GACGC	1 cut(s)	204
Csp6I	GTAC	2 cut(s)	85, 169
CviAII	CATG	3 cut(s)	247, 354, 460
CviJI	RGCY	8 cut(s)	10, 118, 183, 266, 278, 381, 424, 428
CviKI_1	RGCY	8 cut(s)	10, 118, 183, 266, 278, 381, 424, 428
CviQI	GTAC	2 cut(s)	85, 169
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	4 cut(s)	49, 75, 245, 255
DpnII	GATC	4 cut(s)	47, 73, 243, 253
Eco130I	CCWWGG	1 cut(s)	148
EcoRII	CCWGG	1 cut(s)	43
EcoT14I	CCWWGG	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	148
Esp3I	CGTCTC	1 cut(s)	222
FaeI	CATG	3 cut(s)	250, 357, 463
FaiI	YATR	7 cut(s)	7, 106, 161, 248, 355, 461, 466
FatI	CATG	3 cut(s)	246, 353, 459
FbaI	TGATCA	1 cut(s)	243
FblI	GTMKAC	1 cut(s)	450
Fnu4HI	GCNGC	1 cut(s)	279
FokI	GGATG	1 cut(s)	147
Fsp4HI	GCNGC	1 cut(s)	279
GlaI	GCGC	1 cut(s)	352
GluI	GCNGC	1 cut(s)	279
GsaI	CCCAGC	1 cut(s)	14
GsuI	CTGGAG	1 cut(s)	457
HgaI	GACGC	1 cut(s)	204
HhaI	GCGC	1 cut(s)	353
Hin1II	CATG	3 cut(s)	250, 357, 463
Hin6I	GCGC	1 cut(s)	351
HinP1I	GCGC	1 cut(s)	351
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HinfI	GANTC	1 cut(s)	32
HphI	GGTGA	2 cut(s)	33, 253
Hpy166II	GTNNAC	1 cut(s)	451
Hpy188I	TCNGA	2 cut(s)	78, 372
Hpy188III	TCNNGA	1 cut(s)	319
Hpy8I	GTNNAC	1 cut(s)	451
HpyAV	CCTTC	3 cut(s)	200, 301, 386
HpyCH4III	ACNGT	1 cut(s)	376
HpyF3I	CTNAG	1 cut(s)	81
Hsp92II	CATG	3 cut(s)	250, 357, 463
HspAI	GCGC	1 cut(s)	351
Ksp22I	TGATCA	1 cut(s)	243
Kzo9I	GATC	4 cut(s)	47, 73, 243, 253
LpnPI	CCDG	8 cut(s)	30, 57, 100, 104, 304, 387, 410, 421
Lsp1109I	GCAGC	1 cut(s)	265
MalI	GATC	4 cut(s)	49, 75, 245, 255
MboI	GATC	4 cut(s)	47, 73, 243, 253
MboII	GAAGA	2 cut(s)	153, 305
MflI	RGATCY	1 cut(s)	73
MluCI	AATT	3 cut(s)	297, 314, 342
MnlI	CCTC	1 cut(s)	232
MseI	TTAA	3 cut(s)	126, 300, 345
MspA1I	CMGCKG	1 cut(s)	424
MspCI	CTTAAG	1 cut(s)	125
MspR9I	CCNGG	1 cut(s)	45
Mva1269I	GAATGC	2 cut(s)	25, 411
MvaI	CCWGG	1 cut(s)	45
MvnI	CGCG	1 cut(s)	52
NdeII	GATC	4 cut(s)	47, 73, 243, 253
NlaIII	CATG	3 cut(s)	250, 357, 463
PctI	GAATGC	2 cut(s)	25, 411
PfeI	GAWTC	1 cut(s)	32
PkrI	GCNGC	1 cut(s)	280
PshBI	ATTAAT	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	43
PspFI	CCCAGC	1 cut(s)	10
PspGI	CCWGG	1 cut(s)	43
PsuI	RGATCY	1 cut(s)	73
PvuII	CAGCTG	1 cut(s)	424
RsaI	GTAC	2 cut(s)	86, 170
RsaNI	GTAC	2 cut(s)	85, 169
SalI	GTCGAC	1 cut(s)	449
SaqAI	TTAA	3 cut(s)	126, 300, 345
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	4 cut(s)	47, 73, 243, 253
ScaI	AGTACT	1 cut(s)	86
ScrFI	CCNGG	1 cut(s)	45
SetI	ASST	4 cut(s)	154, 243, 397, 426
SfcI	CTRYAG	1 cut(s)	464
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	3 cut(s)	297, 314, 342
StyD4I	CCNGG	1 cut(s)	43
StyI	CCWWGG	1 cut(s)	148
TaaI	ACNGT	1 cut(s)	376
TaqI	TCGA	1 cut(s)	450
TasI	AATT	3 cut(s)	297, 314, 342
TatI	WGTACW	1 cut(s)	84
TfiI	GAWTC	1 cut(s)	32
Tru1I	TTAA	3 cut(s)	126, 300, 345
Tru9I	TTAA	3 cut(s)	126, 300, 345
TscAI	CASTG	1 cut(s)	69
TseI	GCWGC	1 cut(s)	278
TspDTI	ATGAA	2 cut(s)	48, 448
TspRI	CASTG	1 cut(s)	69
Vha464I	CTTAAG	1 cut(s)	125
VspI	ATTAAT	1 cut(s)	345
XapI	RAATTY	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	450
ZrmI	AGTACT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.