Rh4AG124200

tRNA (adenine-N6-)-methyltransferase activity

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Reverse (-)
26964355 .. 26967707
3353 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG124200.1

Sequence Viewer

Length: 396 bp
ATGTCGTCCACATGTTTGCTACCACCTATCAATGGAGGCCACCTTCTCTTCTCTCTCAATCACCATCGCCTCTCTGCAACTCCCACTCCCTACAAGTGGGGATGGAGAAGATACCAAGGTGGAAACATAGTTGCTTACAGAACCAATGGCCACGCCCTTCAAATGTTGCCCAATCCTAATGCATCTCAAAAGAAAGGAAATAATGAGGTGATCATGGTTGATCCTTTGGAAGCCAAGCGATTGGCTGCCAAACAAATGGAAGAAATTAAAGCAAAGGAGAACTTCAGGAGAAAACGACAAATAGAAGCAATTAATGGCGCATGGGCGATGATTGGTCTGACAGCAGGCTTGGTTATTGAAGGTCAAACTGGAAAAAGCATTCTTGTTCAGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

131

Amino Acids

14.56

Weight (kDa)

10.14

Isoelectric Point (pI)

43.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28025 AT4G28025
fragaria_vesca FvH4_4g08570 FvH4_4g08570
malus_domestica MD16G1263600.v1.1
prunus_persica Prupe.1G095600_v2.0.a1
pyrus_communis pycom16g23250
rosa_chinensis RchiOBHm_Chr4g0404651
rosa_laevigata RLG00000008916
rosa_multiflora Rmu_sc0002699.1_g000039
rosa_roxburghii Rroxscaffold_5G00348800
rosa_rugosa Rorug04G0048500
rosa_samantha Rh4AG124200 Rh4BG118300 Rh4CG132300 Rh4DG117300
rosa_wichuraiana Rw4G010070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 215
AcoI YGGCCR 1 cut(s) 148
AcuI CTGAAG 1 cut(s) 268
AfiI CCNNNNNNNGG 2 cut(s) 32, 96
AflIII ACRYGT 1 cut(s) 11
AgsI TTSAA 2 cut(s) 161, 359
AlwI GGATC 1 cut(s) 215
AoxI GGCC 2 cut(s) 37, 148
ApeKI GCWGC 1 cut(s) 245
AseI ATTAAT 1 cut(s) 312
AspLEI GCGC 1 cut(s) 320
AsuHPI GGTGA 2 cut(s) 53, 220
BaeI ACNNNNGTAYC 2 cut(s) 103, 136
BalI TGGCCA 1 cut(s) 150
BbvI GCAGC 1 cut(s) 232
BccI CCATC 2 cut(s) 72, 96
BclI TGATCA 1 cut(s) 210
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
BmsI GCATC 1 cut(s) 191
BsaJI CCNNGG 1 cut(s) 115
BsaXI ACNNNNNCTCC 2 cut(s) 70, 100
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 96
Bse1I ACTGG 1 cut(s) 373
BseDI CCNNGG 1 cut(s) 115
BseGI GGATG 1 cut(s) 107
BseLI CCNNNNNNNGG 2 cut(s) 32, 96
BseNI ACTGG 1 cut(s) 373
BseXI GCAGC 1 cut(s) 232
BshFI GGCC 2 cut(s) 39, 150
BslI CCNNNNNNNGG 2 cut(s) 32, 96
BsmI GAATGC 1 cut(s) 378
BsnI GGCC 2 cut(s) 39, 150
Bsp143I GATC 2 cut(s) 210, 220
BspANI GGCC 2 cut(s) 39, 150
BspPI GGATC 1 cut(s) 215
BsrI ACTGG 1 cut(s) 373
BssECI CCNNGG 1 cut(s) 115
BssMI GATC 2 cut(s) 210, 220
BssT1I CCWWGG 1 cut(s) 115
Bst6I CTCTTC 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 346
BstF5I GGATG 1 cut(s) 107
BstHHI GCGC 1 cut(s) 320
BstKTI GATC 2 cut(s) 213, 223
BstMBI GATC 2 cut(s) 210, 220
BstNSI RCATGY 1 cut(s) 15
BstV1I GCAGC 1 cut(s) 232
BstXI CCANNNNNNTGG 2 cut(s) 241, 256
BsuRI GGCC 2 cut(s) 39, 150
BtgZI GCGATG 2 cut(s) 50, 341
BtsCI GGATG 1 cut(s) 107
Cac8I GCNNGC 1 cut(s) 346
CfoI GCGC 1 cut(s) 320
CviAII CATG 3 cut(s) 12, 214, 321
CviJI RGCY 5 cut(s) 39, 150, 233, 245, 348
CviKI_1 RGCY 5 cut(s) 39, 150, 233, 245, 348
DpnI GATC 2 cut(s) 212, 222
DpnII GATC 2 cut(s) 210, 220
EaeI YGGCCR 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 115
Eco57I CTGAAG 1 cut(s) 268
EcoT14I CCWWGG 1 cut(s) 115
EcoT22I ATGCAT 1 cut(s) 184
ErhI CCWWGG 1 cut(s) 115
FaeI CATG 3 cut(s) 15, 217, 324
FaiI YATR 4 cut(s) 13, 128, 215, 322
FalI AAGNNNNNCTT 2 cut(s) 266, 298
FatI CATG 3 cut(s) 11, 213, 320
FbaI TGATCA 1 cut(s) 210
Fnu4HI GCNGC 1 cut(s) 246
FokI GGATG 1 cut(s) 114
Fsp4HI GCNGC 1 cut(s) 246
GlaI GCGC 1 cut(s) 319
GluI GCNGC 1 cut(s) 246
HaeIII GGCC 2 cut(s) 39, 150
HhaI GCGC 1 cut(s) 320
Hin1II CATG 3 cut(s) 15, 217, 324
Hin6I GCGC 1 cut(s) 318
HinP1I GCGC 1 cut(s) 318
HphI GGTGA 2 cut(s) 53, 220
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 1 cut(s) 339
Hpy188III TCNNGA 1 cut(s) 286
Hpy8I GTNNAC 1 cut(s) 9
HpyAV CCTTC 3 cut(s) 53, 167, 353
HpyCH4V TGCA 2 cut(s) 77, 182
Hsp92II CATG 3 cut(s) 15, 217, 324
HspAI GCGC 1 cut(s) 318
Ksp22I TGATCA 1 cut(s) 210
Kzo9I GATC 2 cut(s) 210, 220
LpnPI CCDG 4 cut(s) 271, 330, 354, 374
Lsp1109I GCAGC 1 cut(s) 232
LweI GCATC 1 cut(s) 191
MalI GATC 2 cut(s) 212, 222
MboI GATC 2 cut(s) 210, 220
MboII GAAGA 3 cut(s) 40, 120, 272
MlsI TGGCCA 1 cut(s) 150
MluCI AATT 2 cut(s) 264, 309
MluNI TGGCCA 1 cut(s) 150
MnlI CCTC 3 cut(s) 29, 80, 199
Mox20I TGGCCA 1 cut(s) 150
Mph1103I ATGCAT 1 cut(s) 184
MscI TGGCCA 1 cut(s) 150
MseI TTAA 2 cut(s) 267, 312
Msp20I TGGCCA 1 cut(s) 150
Mva1269I GAATGC 1 cut(s) 378
NdeII GATC 2 cut(s) 210, 220
NlaIII CATG 3 cut(s) 15, 217, 324
NsiI ATGCAT 1 cut(s) 184
NspI RCATGY 1 cut(s) 15
PciI ACATGT 1 cut(s) 11
PctI GAATGC 1 cut(s) 378
PkrI GCNGC 1 cut(s) 247
PscI ACATGT 1 cut(s) 11
PshBI ATTAAT 1 cut(s) 312
SaqAI TTAA 2 cut(s) 267, 312
SatI GCNGC 1 cut(s) 246
Sau3AI GATC 2 cut(s) 210, 220
SetI ASST 6 cut(s) 28, 45, 121, 210, 364, 393
SfaNI GCATC 1 cut(s) 191
Sse9I AATT 2 cut(s) 264, 309
StyI CCWWGG 1 cut(s) 115
TasI AATT 2 cut(s) 264, 309
Tru1I TTAA 2 cut(s) 267, 312
Tru9I TTAA 2 cut(s) 267, 312
TseI GCWGC 1 cut(s) 245
VspI ATTAAT 1 cut(s) 312
XceI RCATGY 1 cut(s) 15
Zsp2I ATGCAT 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.