AT4G28110
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011836
Physical Location & Seq
Reverse (-)
13968029 .. 13969525
1497 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G28110.1

Sequence Viewer

Length: 849 bp
ATGGGAAGATCACCTTGTTGTGATAAAAATGGAGTGAAGAAGGGACCATGGACTGCTGAGGAGGATCAGAAACTCATCGATTATATTCGATTTCATGGTCCTGGCAATTGGCGTACGCTCCCCAAAAATGCTGGACTCCATAGATGTGGAAAAAGCTGCCGTCTTCGATGGACCAATTATCTAAGACCGGACATCAAGAGAGGAAGATTCTCGTTCGAGGAAGAAGAAACTATCATTCAGCTACACAGTGTTATGGGAAACAAGTGGTCAGCAATAGCCGCTCGTCTACCAGGGAGGACCGATAACGAAATAAAAAACCATTGGAACACTCACATCCGCAAGAGACTTGTAAGGAGTGGTATCGACCCTGTTACTCATTCTCCACGCCTTGATCTTCTTGATTTGTCCTCACTTTTGAGTGCACTTTTCAACCAGCCAAACTTTTCAGCAGTTGCAACACATGCGTCTTCTCTTCTTAATCCTGATGTATTGAGGTTGGCCTCTCTACTACTGCCACTTCAAAACCCTAATCCAGTTTACCCATCGAACCTCGACCAAAATCTTCAAACTCCAAATACATCATCAGAATCGTCTCAACCACAAGCTGAGACTAGTACAGTCCCAACAAACTATGAAACTTCATCATTGGAGCCTATGAACGCAAGACTCGACGACGTTGGTCTTGCAGATGTATTACCACCTTTGTCAGAGAGTTTTGACTTAGACTCGCTCATGTCAACGCCAATGTCTTCTCCACGACAAAATAGCATTGAAGCAGAAACCAACTCCAGCACTTTCTTCGACTTTGGAATTCCGGAAGATTTCATCTTAGATGACTTTATGTTTTAA

Protein Analysis

282

Amino Acids

31.65

Weight (kDa)

5.66

Isoelectric Point (pI)

51.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 2.6e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 1.5e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 111 3.9e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 116 3.3e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011836)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28110 AT4G28110
fragaria_vesca FvH4_6g44350 FvH4_6g44350 FvH4_6g44350
malus_domestica MD00G1065700.v1.1 MD17G1086600.v1.1
prunus_persica Prupe.3G227900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0161281
rosa_laevigata RLG00000021275
rosa_multiflora Rmu_ssc0000196.1_g000009
rosa_roxburghii Rroxscaffold_2G00088950
rosa_rugosa Rorug02G0487700 Rorug02G0487800
rosa_samantha Rh2AG554500 Rh2BG567800 Rh2CG538300 Rh2DG577200
rosa_wichuraiana Rw2G045880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 281
AccI GTMKAC 1 cut(s) 286
AccIII TCCGGA 1 cut(s) 814
AciI CCGC 2 cut(s) 279, 337
AclWI GGATC 1 cut(s) 72
AcsI RAATTY 1 cut(s) 810
AfaI GTAC 2 cut(s) 115, 616
AgsI TTSAA 4 cut(s) 430, 521, 566, 773
AhlI ACTAGT 1 cut(s) 611
AjnI CCWGG 2 cut(s) 100, 289
AluBI AGCT 3 cut(s) 156, 241, 605
AluI AGCT 3 cut(s) 156, 241, 605
Alw21I GWGCWC 1 cut(s) 424
Alw26I GTCTC 3 cut(s) 337, 597, 602
Alw44I GTGCAC 1 cut(s) 420
AlwI GGATC 1 cut(s) 72
Aor13HI TCCGGA 1 cut(s) 814
AoxI GGCC 1 cut(s) 498
ApaLI GTGCAC 1 cut(s) 420
ApeKI GCWGC 1 cut(s) 156
ApoI RAATTY 1 cut(s) 810
AspS9I GGNCC 4 cut(s) 44, 98, 171, 297
AsuHPI GGTGA 1 cut(s) 3
AvaII GGWCC 4 cut(s) 44, 98, 171, 297
BaeGI GKGCMC 1 cut(s) 424
BbsI GAAGAC 3 cut(s) 155, 459, 741
Bbv12I GWGCWC 1 cut(s) 424
BbvCI CCTCAGC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 143
BccI CCATC 2 cut(s) 162, 550
BceAI ACGGC 1 cut(s) 144
BcgI CGANNNNNNTGC 2 cut(s) 781, 815
BciT130I CCWGG 2 cut(s) 102, 291
BcoDI GTCTC 3 cut(s) 337, 597, 602
BcuI ACTAGT 1 cut(s) 611
BfaI CTAG 1 cut(s) 612
BisI GCNGC 2 cut(s) 157, 279
BlsI GCNGC 2 cut(s) 158, 280
Bme1390I CCNGG 2 cut(s) 102, 291
Bme18I GGWCC 4 cut(s) 44, 98, 171, 297
BmgT120I GGNCC 4 cut(s) 44, 98, 171, 297
BmiI GGNNCC 2 cut(s) 45, 651
BmrFI CCNGG 2 cut(s) 102, 291
BoxI GACNNNNGTC 1 cut(s) 678
BpiI GAAGAC 3 cut(s) 155, 459, 741
BpmI CTGGAG 1 cut(s) 772
Bpu10I CCTNAGC 1 cut(s) 57
Bsa29I ATCGAT 1 cut(s) 78
BsaJI CCNNGG 2 cut(s) 47, 290
BsaWI WCCGGW 2 cut(s) 187, 814
BsaXI ACNNNNNCTCC 2 cut(s) 364, 394
Bse1I ACTGG 1 cut(s) 533
BseAI TCCGGA 1 cut(s) 814
BseBI CCWGG 2 cut(s) 102, 291
BseCI ATCGAT 1 cut(s) 78
BseDI CCNNGG 2 cut(s) 47, 290
BseGI GGATG 1 cut(s) 333
BseMII CTCAG 2 cut(s) 48, 597
BseNI ACTGG 1 cut(s) 533
BseRI GAGGAG 1 cut(s) 74
BseSI GKGCMC 1 cut(s) 424
BseXI GCAGC 1 cut(s) 143
BshFI GGCC 1 cut(s) 500
BshVI ATCGAT 1 cut(s) 78
BsiHKAI GWGCWC 1 cut(s) 424
BsiSI CCGG 2 cut(s) 188, 815
BsiWI CGTACG 1 cut(s) 113
BslFI GGGAC 2 cut(s) 57, 605
BsmAI GTCTC 3 cut(s) 337, 597, 602
BsmBI CGTCTC 1 cut(s) 597
BsmFI GGGAC 2 cut(s) 57, 605
BsnI GGCC 1 cut(s) 500
Bsp1286I GDGCHC 1 cut(s) 424
Bsp13I TCCGGA 1 cut(s) 814
Bsp143I GATC 3 cut(s) 8, 64, 391
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 2 cut(s) 279, 337
BspANI GGCC 1 cut(s) 500
BspCNI CTCAG 2 cut(s) 49, 598
BspDI ATCGAT 1 cut(s) 78
BspEI TCCGGA 1 cut(s) 814
BspLI GGNNCC 2 cut(s) 45, 651
BspPI GGATC 1 cut(s) 72
BsrBI CCGCTC 1 cut(s) 281
BsrI ACTGG 1 cut(s) 533
BssECI CCNNGG 2 cut(s) 47, 290
BssMI GATC 3 cut(s) 8, 64, 391
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 2 cut(s) 102, 291
Bst4CI ACNGT 2 cut(s) 248, 619
Bst6I CTCTTC 1 cut(s) 477
BstAPI GCANNNNNTGC 1 cut(s) 461
BstDEI CTNAG 5 cut(s) 57, 182, 606, 721, 829
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 1 cut(s) 333
BstKTI GATC 3 cut(s) 11, 67, 394
BstMAI GTCTC 3 cut(s) 337, 597, 602
BstMBI GATC 3 cut(s) 8, 64, 391
BstMWI GCNNNNNNNGC 2 cut(s) 278, 461
BstNI CCWGG 2 cut(s) 102, 291
BstNSI RCATGY 1 cut(s) 464
BstPAI GACNNNNGTC 1 cut(s) 678
BstSCI CCNGG 2 cut(s) 100, 289
BstSLI GKGCMC 1 cut(s) 424
BstV1I GCAGC 1 cut(s) 143
BstV2I GAAGAC 3 cut(s) 155, 459, 741
BstXI CCANNNNNNTGG 1 cut(s) 146
Bsu15I ATCGAT 1 cut(s) 78
BsuRI GGCC 1 cut(s) 500
BsuTUI ATCGAT 1 cut(s) 78
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 1 cut(s) 333
BtsIMutI CAGTG 1 cut(s) 253
Cfr13I GGNCC 4 cut(s) 44, 98, 171, 297
ClaI ATCGAT 1 cut(s) 78
CseI GACGC 1 cut(s) 453
Csp6I GTAC 2 cut(s) 114, 615
CviAII CATG 4 cut(s) 48, 95, 461, 733
CviJI RGCY 7 cut(s) 156, 241, 278, 436, 500, 605, 652
CviKI_1 RGCY 7 cut(s) 156, 241, 278, 436, 500, 605, 652
CviQI GTAC 2 cut(s) 114, 615
DdeI CTNAG 5 cut(s) 57, 182, 606, 721, 829
DpnI GATC 3 cut(s) 10, 66, 393
DpnII GATC 3 cut(s) 8, 64, 391
Eam1104I CTCTTC 1 cut(s) 477
EarI CTCTTC 1 cut(s) 477
Eco130I CCWWGG 1 cut(s) 47
Eco47I GGWCC 4 cut(s) 44, 98, 171, 297
EcoRI GAATTC 1 cut(s) 810
EcoRII CCWGG 2 cut(s) 100, 289
EcoT14I CCWWGG 1 cut(s) 47
ErhI CCWWGG 1 cut(s) 47
Esp3I CGTCTC 1 cut(s) 597
FaeI CATG 4 cut(s) 51, 98, 464, 736
FalI AAGNNNNNCTT 1 cut(s) 30
FaqI GGGAC 2 cut(s) 57, 605
FatI CATG 4 cut(s) 47, 94, 460, 732
FblI GTMKAC 1 cut(s) 286
Fnu4HI GCNGC 2 cut(s) 157, 279
FokI GGATG 1 cut(s) 320
Fsp4HI GCNGC 2 cut(s) 157, 279
FspBI CTAG 1 cut(s) 612
GluI GCNGC 2 cut(s) 157, 279
GsuI CTGGAG 1 cut(s) 772
HaeIII GGCC 1 cut(s) 500
HapII CCGG 2 cut(s) 188, 815
HgaI GACGC 1 cut(s) 453
Hin1II CATG 4 cut(s) 51, 98, 464, 736
HincII GTYRAC 1 cut(s) 738
HindII GTYRAC 1 cut(s) 738
HinfI GANTC 5 cut(s) 135, 207, 587, 666, 725
HpaII CCGG 2 cut(s) 188, 815
HphI GGTGA 1 cut(s) 3
Hpy166II GTNNAC 4 cut(s) 287, 422, 538, 738
Hpy188I TCNGA 3 cut(s) 69, 586, 709
Hpy188III TCNNGA 4 cut(s) 196, 398, 482, 815
Hpy8I GTNNAC 4 cut(s) 287, 422, 538, 738
Hpy99I CGWCG 2 cut(s) 674, 677
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 2 cut(s) 248, 619
HpyCH4IV ACGT 1 cut(s) 675
HpyCH4V TGCA 3 cut(s) 422, 455, 686
HpyF10VI GCNNNNNNNGC 2 cut(s) 278, 461
HpyF3I CTNAG 5 cut(s) 57, 182, 606, 721, 829
HpySE526I ACGT 1 cut(s) 675
Hsp92II CATG 4 cut(s) 51, 98, 464, 736
Kpn2I TCCGGA 1 cut(s) 814
Kzo9I GATC 3 cut(s) 8, 64, 391
LmnI GCTCC 2 cut(s) 123, 649
Lsp1109I GCAGC 1 cut(s) 143
MaeI CTAG 1 cut(s) 612
MaeII ACGT 1 cut(s) 675
MaeIII GTNAC 1 cut(s) 370
MalI GATC 3 cut(s) 10, 66, 393
MbiI CCGCTC 1 cut(s) 281
MboI GATC 3 cut(s) 8, 64, 391
MfeI CAATTG 1 cut(s) 106
MhlI GDGCHC 1 cut(s) 424
MluCI AATT 3 cut(s) 106, 175, 810
MlyI GAGTC 3 cut(s) 129, 660, 719
MnlI CCTC 9 cut(s) 52, 55, 194, 211, 288, 418, 486, 511, 560
MroI TCCGGA 1 cut(s) 814
MseI TTAA 2 cut(s) 477, 847
MslI CAYNNNNRTG 1 cut(s) 144
MspI CCGG 2 cut(s) 188, 815
MspR9I CCNGG 2 cut(s) 102, 291
MunI CAATTG 1 cut(s) 106
MvaI CCWGG 2 cut(s) 102, 291
MwoI GCNNNNNNNGC 2 cut(s) 278, 461
NcoI CCATGG 1 cut(s) 47
NdeII GATC 3 cut(s) 8, 64, 391
NlaIII CATG 4 cut(s) 51, 98, 464, 736
NlaIV GGNNCC 2 cut(s) 45, 651
NspI RCATGY 1 cut(s) 464
PcsI WCGNNNNNNNCGW 1 cut(s) 666
PfeI GAWTC 2 cut(s) 207, 587
Pfl23II CGTACG 1 cut(s) 113
PkrI GCNGC 2 cut(s) 158, 280
PleI GAGTC 3 cut(s) 129, 660, 719
PpsI GAGTC 3 cut(s) 129, 660, 719
PshAI GACNNNNGTC 1 cut(s) 678
Psp6I CCWGG 2 cut(s) 100, 289
PspGI CCWGG 2 cut(s) 100, 289
PspLI CGTACG 1 cut(s) 113
PspN4I GGNNCC 2 cut(s) 45, 651
PspPI GGNCC 4 cut(s) 44, 98, 171, 297
RsaI GTAC 2 cut(s) 115, 616
RsaNI GTAC 2 cut(s) 114, 615
RseI CAYNNNNRTG 1 cut(s) 144
SaqAI TTAA 2 cut(s) 477, 847
SatI GCNGC 2 cut(s) 157, 279
Sau3AI GATC 3 cut(s) 8, 64, 391
Sau96I GGNCC 4 cut(s) 44, 98, 171, 297
SchI GAGTC 3 cut(s) 129, 660, 719
ScrFI CCNGG 2 cut(s) 102, 291
SduI GDGCHC 1 cut(s) 424
SetI ASST 8 cut(s) 16, 158, 243, 497, 552, 607, 678, 703
SinI GGWCC 4 cut(s) 44, 98, 171, 297
SmiMI CAYNNNNRTG 1 cut(s) 144
SpeI ACTAGT 1 cut(s) 611
Sse9I AATT 3 cut(s) 106, 175, 810
SsiI CCGC 2 cut(s) 279, 337
SspMI CTAG 1 cut(s) 612
StyD4I CCNGG 2 cut(s) 100, 289
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 2 cut(s) 248, 619
TaiI ACGT 1 cut(s) 678
TaqI TCGA 9 cut(s) 78, 88, 166, 216, 363, 545, 552, 669, 801
TaqII GACCGA 1 cut(s) 314
TasI AATT 3 cut(s) 106, 175, 810
TatI WGTACW 1 cut(s) 614
TauI GCSGC 1 cut(s) 281
TfiI GAWTC 2 cut(s) 207, 587
Tru1I TTAA 2 cut(s) 477, 847
Tru9I TTAA 2 cut(s) 477, 847
TscAI CASTG 1 cut(s) 253
TseI GCWGC 1 cut(s) 156
TspDTI ATGAA 5 cut(s) 83, 630, 648, 671, 814
TspRI CASTG 1 cut(s) 253
VneI GTGCAC 1 cut(s) 420
VpaK11BI GGWCC 4 cut(s) 44, 98, 171, 297
XapI RAATTY 1 cut(s) 810
XceI RCATGY 1 cut(s) 464
XmiI GTMKAC 1 cut(s) 286
XspI CTAG 1 cut(s) 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.