Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0011836

Physical Location & Seq

Genomic Coordinates Forward (+)

22700842 .. 22702027

Gene Structure 1186 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G227900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGTAAGAGCCCCCTTCTACGACAAAAGTGGACTGAAGAAAGGGGCATGGAGTCCTGAAGAAGACGACACGTTAAGAGCCTATATTGAAGAACATGGCCATTTGAACTGGCGTTCGCTTCCCAAATTTGCCGGTATATCTAGGTGTGGCAAAAGTTGCAGACTGAGATGGACCAACTACCTTCGACCGGGTGTAAAACGGGGAAATTACACTCAAGCAGAAGACGATTTGATCCTCAAATTGCATGAAGAATTTGGAAATAAATGGTCAATGATTGCTACAAAATTACCTGGAAGAACAGACAATGAAATCAAAAATCATTGGAACACCCGCTTTAAGAAGCTCACAGAGCAAAATCCAACATCATCTCAATCAGCCAAAGAGCAGCCTTGTAATCACGAGTCTTCCCCAACTGTAACTAGCCAAAACACAGAATTAGGAGCTCAAAGTGGTCCAAAATTTGATGCATCTGTTCACCAAATTTTGGAGAGCTCTCCCTTGTCCCCCGAAACATTTTCCAGTGACTCCTCCTCCCTGAGCTCCAATCAGGCATCTGCATCTACTTCTATGAGTTGGTTTAATGAATCGACCGGAGATTTTTGGACCGAACCATTTCAATTGAATGTCCAAAGTAACTATTCAGTTAACTACTTGAGGGAGGAGGAAGTTTTATCATCACCATCCTTAACGTTTTATGATATAGGGGACAACATGGATTTGTTCTACCAGGTGATGCCAACATGGCCAGAGAATATTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

254

Amino Acids

28.78

Weight (kDa)

5.33

Isoelectric Point (pI)

70.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28110 AT4G28110
fragaria_vesca	FvH4_6g44350 FvH4_6g44350 FvH4_6g44350
malus_domestica	MD00G1065700.v1.1 MD17G1086600.v1.1
prunus_persica	Prupe.3G227900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0161281
rosa_laevigata	RLG00000021275
rosa_multiflora	Rmu_ssc0000196.1_g000009
rosa_roxburghii	Rroxscaffold_2G00088950
rosa_rugosa	Rorug02G0487700 Rorug02G0487800
rosa_samantha	Rh2AG554500 Rh2BG567800 Rh2CG538300 Rh2DG577200
rosa_wichuraiana	Rw2G045880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	484
AciI	CCGC	1 cut(s)	331
AclI	AACGTT	1 cut(s)	689
AclWI	GGATC	1 cut(s)	226
AcoI	YGGCCR	2 cut(s)	97, 743
AcsI	RAATTY	4 cut(s)	125, 251, 458, 480
AcuI	CTGAAG	2 cut(s)	56, 78
AfiI	CCNNNNNNNGG	2 cut(s)	187, 484
AflIII	ACRYGT	1 cut(s)	69
AgsI	TTSAA	4 cut(s)	89, 106, 617, 622
AjnI	CCWGG	2 cut(s)	289, 726
AluBI	AGCT	4 cut(s)	343, 443, 492, 540
AluI	AGCT	4 cut(s)	343, 443, 492, 540
Alw21I	GWGCWC	3 cut(s)	445, 494, 542
AlwI	GGATC	1 cut(s)	226
AoxI	GGCC	2 cut(s)	97, 743
ApeKI	GCWGC	1 cut(s)	385
ApoI	RAATTY	4 cut(s)	125, 251, 458, 480
Asp700I	GAANNNNTTC	1 cut(s)	612
AspS9I	GGNCC	3 cut(s)	171, 452, 603
AsuC2I	CCSGG	1 cut(s)	189
AsuHPI	GGTGA	3 cut(s)	467, 669, 742
AvaII	GGWCC	3 cut(s)	171, 452, 603
BalI	TGGCCA	2 cut(s)	99, 745
BanII	GRGCYC	4 cut(s)	13, 445, 494, 542
BauI	CACGAG	1 cut(s)	398
BbsI	GAAGAC	3 cut(s)	69, 228, 396
Bbv12I	GWGCWC	3 cut(s)	445, 494, 542
BbvI	GCAGC	1 cut(s)	397
BccI	CCATC	2 cut(s)	162, 688
BciT130I	CCWGG	2 cut(s)	291, 728
BcnI	CCSGG	1 cut(s)	189
BfaI	CTAG	2 cut(s)	141, 420
BglI	GCCNNNNNGGC	1 cut(s)	742
BisI	GCNGC	1 cut(s)	386
BlsI	GCNGC	1 cut(s)	387
Bme1390I	CCNGG	3 cut(s)	189, 291, 728
Bme18I	GGWCC	3 cut(s)	171, 452, 603
BmgT120I	GGNCC	3 cut(s)	171, 452, 603
BmrFI	CCNGG	3 cut(s)	189, 291, 728
BmsI	GCATC	5 cut(s)	454, 476, 560, 566, 723
BpiI	GAAGAC	3 cut(s)	69, 228, 396
Bpu10I	CCTNAGC	1 cut(s)	536
BpuEI	CTTGAG	2 cut(s)	198, 673
BpuMI	CCSGG	1 cut(s)	189
BsaWI	WCCGGW	1 cut(s)	590
BsaXI	ACNNNNNCTCC	2 cut(s)	515, 545
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 484
Bse118I	RCCGGY	1 cut(s)	131
Bse1I	ACTGG	2 cut(s)	113, 519
BseBI	CCWGG	2 cut(s)	291, 728
BseGI	GGATG	1 cut(s)	680
BseLI	CCNNNNNNNGG	2 cut(s)	187, 484
BseMII	CTCAG	2 cut(s)	155, 527
BseNI	ACTGG	2 cut(s)	113, 519
BseRI	GAGGAG	3 cut(s)	517, 520, 674
BseXI	GCAGC	1 cut(s)	397
Bsh1285I	CGRYCG	2 cut(s)	188, 591
BshFI	GGCC	2 cut(s)	99, 745
BsiEI	CGRYCG	2 cut(s)	188, 591
BsiHKAI	GWGCWC	3 cut(s)	445, 494, 542
BsiSI	CCGG	3 cut(s)	132, 188, 591
BslFI	GGGAC	2 cut(s)	487, 719
BslI	CCNNNNNNNGG	2 cut(s)	187, 484
BsmFI	GGGAC	2 cut(s)	487, 719
BsnI	GGCC	2 cut(s)	99, 745
Bsp1286I	GDGCHC	4 cut(s)	13, 445, 494, 542
Bsp143I	GATC	1 cut(s)	231
BspACI	CCGC	1 cut(s)	331
BspANI	GGCC	2 cut(s)	99, 745
BspCNI	CTCAG	2 cut(s)	156, 528
BspPI	GGATC	1 cut(s)	226
BsrFI	RCCGGY	1 cut(s)	131
BsrI	ACTGG	2 cut(s)	113, 519
BssAI	RCCGGY	1 cut(s)	131
BssMI	GATC	1 cut(s)	231
BssSI	CACGAG	1 cut(s)	398
Bst2BI	CACGAG	1 cut(s)	398
Bst2UI	CCWGG	2 cut(s)	291, 728
Bst4CI	ACNGT	1 cut(s)	415
BstAPI	GCANNNNNTGC	1 cut(s)	156
BstDEI	CTNAG	2 cut(s)	164, 536
BstF5I	GGATG	1 cut(s)	680
BstKTI	GATC	1 cut(s)	234
BstMBI	GATC	1 cut(s)	231
BstMCI	CGRYCG	2 cut(s)	188, 591
BstMWI	GCNNNNNNNGC	3 cut(s)	156, 349, 742
BstNI	CCWGG	2 cut(s)	291, 728
BstSCI	CCNGG	3 cut(s)	187, 289, 726
BstV1I	GCAGC	1 cut(s)	397
BstV2I	GAAGAC	3 cut(s)	69, 228, 396
BsuRI	GGCC	2 cut(s)	99, 745
BtsCI	GGATG	1 cut(s)	680
BtsIMutI	CAGTG	1 cut(s)	526
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	3 cut(s)	171, 452, 603
CsiI	ACCWGGT	1 cut(s)	726
CviAII	CATG	5 cut(s)	48, 95, 245, 712, 741
DdeI	CTNAG	2 cut(s)	164, 536
DpnI	GATC	1 cut(s)	233
DpnII	GATC	1 cut(s)	231
EaeI	YGGCCR	2 cut(s)	97, 743
Ecl136II	GAGCTC	3 cut(s)	443, 492, 540
Eco24I	GRGCYC	4 cut(s)	13, 445, 494, 542
Eco47I	GGWCC	3 cut(s)	171, 452, 603
Eco53kI	GAGCTC	3 cut(s)	443, 492, 540
Eco57I	CTGAAG	2 cut(s)	56, 78
EcoICRI	GAGCTC	3 cut(s)	443, 492, 540
EcoRII	CCWGG	2 cut(s)	289, 726
EcoT22I	ATGCAT	1 cut(s)	469
EcoT38I	GRGCYC	4 cut(s)	13, 445, 494, 542
FaeI	CATG	5 cut(s)	51, 98, 248, 715, 744
FaqI	GGGAC	2 cut(s)	487, 719
FatI	CATG	5 cut(s)	47, 94, 244, 711, 740
FauI	CCCGC	1 cut(s)	338
Fnu4HI	GCNGC	1 cut(s)	386
FokI	GGATG	1 cut(s)	667
FriOI	GRGCYC	4 cut(s)	13, 445, 494, 542
Fsp4HI	GCNGC	1 cut(s)	386
FspBI	CTAG	2 cut(s)	141, 420
GluI	GCNGC	1 cut(s)	386
HaeIII	GGCC	2 cut(s)	99, 745
HapII	CCGG	3 cut(s)	132, 188, 591
Hin1II	CATG	5 cut(s)	51, 98, 248, 715, 744
HincII	GTYRAC	1 cut(s)	646
HindII	GTYRAC	1 cut(s)	646
HinfI	GANTC	4 cut(s)	52, 401, 524, 584
HpaI	GTTAAC	1 cut(s)	646
HpaII	CCGG	3 cut(s)	132, 188, 591
HphI	GGTGA	3 cut(s)	467, 669, 742
Hpy166II	GTNNAC	3 cut(s)	32, 475, 646
Hpy188III	TCNNGA	2 cut(s)	56, 398
Hpy8I	GTNNAC	3 cut(s)	32, 475, 646
HpyAV	CCTTC	2 cut(s)	25, 191
HpyCH4III	ACNGT	1 cut(s)	415
HpyCH4IV	ACGT	2 cut(s)	71, 689
HpyCH4V	TGCA	4 cut(s)	159, 244, 467, 557
HpyF10VI	GCNNNNNNNGC	3 cut(s)	156, 349, 742
HpyF3I	CTNAG	2 cut(s)	164, 536
HpySE526I	ACGT	2 cut(s)	71, 689
Hsp92II	CATG	5 cut(s)	51, 98, 248, 715, 744
KspAI	GTTAAC	1 cut(s)	646
Kzo9I	GATC	1 cut(s)	231
LmnI	GCTCC	2 cut(s)	440, 545
Lsp1109I	GCAGC	1 cut(s)	397
LweI	GCATC	5 cut(s)	454, 476, 560, 566, 723
MabI	ACCWGGT	1 cut(s)	726
MaeI	CTAG	2 cut(s)	141, 420
MaeII	ACGT	2 cut(s)	71, 689
MaeIII	GTNAC	3 cut(s)	415, 521, 632
MalI	GATC	1 cut(s)	233
MboI	GATC	1 cut(s)	231
MboII	GAAGA	8 cut(s)	49, 71, 74, 101, 233, 260, 306, 396
MfeI	CAATTG	1 cut(s)	617
MhlI	GDGCHC	4 cut(s)	13, 445, 494, 542
MlsI	TGGCCA	2 cut(s)	99, 745
MluCI	AATT	9 cut(s)	125, 205, 239, 251, 284, 434, 458, 480, 617
MluNI	TGGCCA	2 cut(s)	99, 745
MlyI	GAGTC	3 cut(s)	61, 410, 518
MmeI	TCCRAC	1 cut(s)	383
MnlI	CCTC	6 cut(s)	245, 538, 541, 648, 652, 655
Mox20I	TGGCCA	2 cut(s)	99, 745
Mph1103I	ATGCAT	1 cut(s)	469
MroXI	GAANNNNTTC	1 cut(s)	612
MscI	TGGCCA	2 cut(s)	99, 745
MseI	TTAA	6 cut(s)	74, 336, 579, 645, 686, 760
Msp20I	TGGCCA	2 cut(s)	99, 745
MspI	CCGG	3 cut(s)	132, 188, 591
MspR9I	CCNGG	3 cut(s)	189, 291, 728
MunI	CAATTG	1 cut(s)	617
MvaI	CCWGG	2 cut(s)	291, 728
MwoI	GCNNNNNNNGC	3 cut(s)	156, 349, 742
NciI	CCSGG	1 cut(s)	189
NdeII	GATC	1 cut(s)	231
NlaIII	CATG	5 cut(s)	51, 98, 248, 715, 744
NmuCI	GTSAC	1 cut(s)	521
NsiI	ATGCAT	1 cut(s)	469
PdmI	GAANNNNTTC	1 cut(s)	612
PfeI	GAWTC	1 cut(s)	584
PflMI	CCANNNNNTGG	1 cut(s)	484
PkrI	GCNGC	1 cut(s)	387
PleI	GAGTC	3 cut(s)	60, 409, 518
PpsI	GAGTC	3 cut(s)	60, 409, 518
Psp124BI	GAGCTC	3 cut(s)	445, 494, 542
Psp1406I	AACGTT	1 cut(s)	689
Psp6I	CCWGG	2 cut(s)	289, 726
PspGI	CCWGG	2 cut(s)	289, 726
PspPI	GGNCC	3 cut(s)	171, 452, 603
SacI	GAGCTC	3 cut(s)	445, 494, 542
SaqAI	TTAA	6 cut(s)	74, 336, 579, 645, 686, 760
SatI	GCNGC	1 cut(s)	386
Sau3AI	GATC	1 cut(s)	231
Sau96I	GGNCC	3 cut(s)	171, 452, 603
SchI	GAGTC	3 cut(s)	61, 410, 518
ScrFI	CCNGG	3 cut(s)	189, 291, 728
SduI	GDGCHC	4 cut(s)	13, 445, 494, 542
SexAI	ACCWGGT	1 cut(s)	726
SfaNI	GCATC	5 cut(s)	454, 476, 560, 566, 723
SinI	GGWCC	3 cut(s)	171, 452, 603
SmlI	CTYRAG	2 cut(s)	213, 652
SmoI	CTYRAG	2 cut(s)	213, 652
Sse9I	AATT	9 cut(s)	125, 205, 239, 251, 284, 434, 458, 480, 617
SsiI	CCGC	1 cut(s)	331
SspI	AATATT	1 cut(s)	754
SspMI	CTAG	2 cut(s)	141, 420
SstI	GAGCTC	3 cut(s)	445, 494, 542
StyD4I	CCNGG	3 cut(s)	187, 289, 726
TaaI	ACNGT	1 cut(s)	415
TaiI	ACGT	2 cut(s)	74, 692
TaqI	TCGA	2 cut(s)	184, 587
TaqII	GACCGA	1 cut(s)	620
TasI	AATT	9 cut(s)	125, 205, 239, 251, 284, 434, 458, 480, 617
TfiI	GAWTC	1 cut(s)	584
Tru1I	TTAA	6 cut(s)	74, 336, 579, 645, 686, 760
Tru9I	TTAA	6 cut(s)	74, 336, 579, 645, 686, 760
TscAI	CASTG	1 cut(s)	526
TseFI	GTSAC	1 cut(s)	521
TseI	GCWGC	1 cut(s)	385
Tsp45I	GTSAC	1 cut(s)	521
TspDTI	ATGAA	3 cut(s)	261, 321, 597
TspRI	CASTG	1 cut(s)	526
Van91I	CCANNNNNTGG	1 cut(s)	484
VpaK11BI	GGWCC	3 cut(s)	171, 452, 603
XapI	RAATTY	4 cut(s)	125, 251, 458, 480
XmnI	GAANNNNTTC	1 cut(s)	612
XspI	CTAG	2 cut(s)	141, 420
Zsp2I	ATGCAT	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.