Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0011836

Physical Location & Seq

Genomic Coordinates Reverse (-)

10827294 .. 10828757

Gene Structure 1464 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00088950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGTGAGAGCTCCGTTCTATGACAAAAGTGGAGTAAAGAAAGGGGCATGGAGTGCTGAAGAAGACGATAAGTTGAGAACTTATATCCAAAGCTATGGCCATTGGAACTGGCGTCAACTACCGAAATTTGCTGGTGTAAAACATGGAGATTACACTGAAGAAGAAGAGGCTTTAATCATCAAACTACATGAACAACTTGGGAATAAATGGTCGATGATTGCTGCAAAATTACCAGGAAGAACTGACAATGAAATAAAAAACCATTGGCACACCCACATGAAGAAGAAGAAGAAGCGCACAACAAAACAGCAAAATCAAACATCATCTGGTCAAGTGGTACTTCTAAAAGATCATCAGCAGCCTTCTGATGATCACGAGTACTCATCAAGCAATTCAGACAACCAATTAGGGGGTCATGAAAGTGCTACTCATAATTGTAATGATGCTAATTCTCTACAATTACTTCATCCCCAAATTTTGGAGAGCTCCCCTGTAGTATCCCGTGAGTCAACATTTTCCAGTAGTACTAGTTCAGCAAAGTATGTCTCCTCCTGCTCCTCCTCCTCATCCTCAAGCTCCCCTAATAATCATGAAGCACGAGGTTCTACCGTGATCATGAACTATCTTGGTGATCAAGATATTGTCATGGTTTCATCATCAGAAACAATGATATTGGATCAAGAATACAGTGCTGGTGATTTTTGGACCAAACCGTTTCTACAGGACAATACCTGTATCGAAAGTGACACTATATCATCTTCATCATCGTATTTATTGTCCTATGATGAAGGGATGGATTTGTTCTACCAGGTCATGCCAACACCGCAAGAGGGTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

279

Amino Acids

31.32

Weight (kDa)

5.61

Isoelectric Point (pI)

61.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	49 - 92	3e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	52 - 101	3.6e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28110 AT4G28110
fragaria_vesca	FvH4_6g44350 FvH4_6g44350 FvH4_6g44350
malus_domestica	MD00G1065700.v1.1 MD17G1086600.v1.1
prunus_persica	Prupe.3G227900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0161281
rosa_laevigata	RLG00000021275
rosa_multiflora	Rmu_ssc0000196.1_g000009
rosa_roxburghii	Rroxscaffold_2G00088950
rosa_rugosa	Rorug02G0487700 Rorug02G0487800
rosa_samantha	Rh2AG554500 Rh2BG567800 Rh2CG538300 Rh2DG577200
rosa_wichuraiana	Rw2G045880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	478
AciI	CCGC	1 cut(s)	824
AclWI	GGATC	1 cut(s)	684
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	2 cut(s)	125, 474
AcuI	CTGAAG	2 cut(s)	78, 177
AcyI	GRCGYC	1 cut(s)	112
AfaI	GTAC	3 cut(s)	339, 380, 526
AfiI	CCNNNNNNNGG	3 cut(s)	409, 478, 830
AhlI	ACTAGT	1 cut(s)	527
AjnI	CCWGG	2 cut(s)	232, 807
AluBI	AGCT	4 cut(s)	11, 93, 486, 576
AluI	AGCT	4 cut(s)	11, 93, 486, 576
Alw21I	GWGCWC	2 cut(s)	13, 488
Alw26I	GTCTC	1 cut(s)	550
AlwI	GGATC	1 cut(s)	684
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	2 cut(s)	221, 358
ApoI	RAATTY	2 cut(s)	125, 474
AspLEI	GCGC	1 cut(s)	297
AspS9I	GGNCC	1 cut(s)	705
AsuHPI	GGTGA	3 cut(s)	16, 641, 707
AvaII	GGWCC	1 cut(s)	705
BalI	TGGCCA	1 cut(s)	99
BanII	GRGCYC	2 cut(s)	13, 488
BauI	CACGAG	2 cut(s)	374, 597
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	2 cut(s)	13, 488
BbvI	GCAGC	2 cut(s)	208, 370
BccI	CCATC	1 cut(s)	787
BciT130I	CCWGG	2 cut(s)	234, 809
BciVI	GTATCC	1 cut(s)	508
BclI	TGATCA	3 cut(s)	370, 612, 631
BcoDI	GTCTC	1 cut(s)	550
BcuI	ACTAGT	1 cut(s)	527
BfaI	CTAG	1 cut(s)	528
BfmI	CTRYAG	2 cut(s)	492, 719
BfuI	GTATCC	1 cut(s)	508
BisI	GCNGC	2 cut(s)	222, 359
BlsI	GCNGC	2 cut(s)	223, 360
BmcAI	AGTACT	2 cut(s)	380, 526
Bme1390I	CCNGG	2 cut(s)	234, 809
Bme18I	GGWCC	1 cut(s)	705
BmgT120I	GGNCC	1 cut(s)	705
BmrFI	CCNGG	2 cut(s)	234, 809
BmsI	GCATC	1 cut(s)	433
BpiI	GAAGAC	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	556
BsaHI	GRCGYC	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	3 cut(s)	409, 478, 830
Bse1I	ACTGG	2 cut(s)	113, 519
BseBI	CCWGG	2 cut(s)	234, 809
BseGI	GGATG	3 cut(s)	466, 566, 798
BseLI	CCNNNNNNNGG	3 cut(s)	409, 478, 830
BseNI	ACTGG	2 cut(s)	113, 519
BseRI	GAGGAG	4 cut(s)	538, 547, 550, 553
BseXI	GCAGC	2 cut(s)	208, 370
BshFI	GGCC	1 cut(s)	99
BsiHKAI	GWGCWC	2 cut(s)	13, 488
BslI	CCNNNNNNNGG	3 cut(s)	409, 478, 830
BsmAI	GTCTC	1 cut(s)	550
BsnI	GGCC	1 cut(s)	99
Bsp1286I	GDGCHC	2 cut(s)	13, 488
Bsp143I	GATC	5 cut(s)	349, 370, 612, 631, 676
BspACI	CCGC	1 cut(s)	824
BspANI	GGCC	1 cut(s)	99
BspHI	TCATGA	3 cut(s)	415, 589, 615
BspPI	GGATC	1 cut(s)	684
BsrI	ACTGG	2 cut(s)	113, 519
BssMI	GATC	5 cut(s)	349, 370, 612, 631, 676
BssNI	GRCGYC	1 cut(s)	112
BssSI	CACGAG	2 cut(s)	374, 597
Bst2BI	CACGAG	2 cut(s)	374, 597
Bst2UI	CCWGG	2 cut(s)	234, 809
Bst4CI	ACNGT	3 cut(s)	610, 689, 714
Bst6I	CTCTTC	1 cut(s)	159
BstACI	GRCGYC	1 cut(s)	112
BstAPI	GCANNNNNTGC	1 cut(s)	53
BstF5I	GGATG	3 cut(s)	466, 566, 798
BstHHI	GCGC	1 cut(s)	297
BstKTI	GATC	5 cut(s)	352, 373, 615, 634, 679
BstMAI	GTCTC	1 cut(s)	550
BstMBI	GATC	5 cut(s)	349, 370, 612, 631, 676
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 823
BstNI	CCWGG	2 cut(s)	234, 809
BstSCI	CCNGG	2 cut(s)	232, 807
BstSFI	CTRYAG	2 cut(s)	492, 719
BstV1I	GCAGC	2 cut(s)	208, 370
BstV2I	GAAGAC	1 cut(s)	69
BstXI	CCANNNNNNTGG	1 cut(s)	95
BsuI	GTATCC	1 cut(s)	508
BsuRI	GGCC	1 cut(s)	99
BtsCI	GGATG	3 cut(s)	466, 566, 798
BtsIMutI	CAGTG	2 cut(s)	153, 694
CciI	TCATGA	3 cut(s)	415, 589, 615
CfoI	GCGC	1 cut(s)	297
Cfr13I	GGNCC	1 cut(s)	705
CseI	GACGC	1 cut(s)	101
CsiI	ACCWGGT	1 cut(s)	807
Csp6I	GTAC	3 cut(s)	338, 379, 525
CviAII	CATG	9 cut(s)	48, 143, 188, 277, 416, 590, 616, 646, 814
CviJI	RGCY	7 cut(s)	11, 93, 99, 170, 361, 486, 576
CviKI_1	RGCY	7 cut(s)	11, 93, 99, 170, 361, 486, 576
CviQI	GTAC	3 cut(s)	338, 379, 525
DpnI	GATC	5 cut(s)	351, 372, 614, 633, 678
DpnII	GATC	5 cut(s)	349, 370, 612, 631, 676
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Ecl136II	GAGCTC	2 cut(s)	11, 486
Eco24I	GRGCYC	2 cut(s)	13, 488
Eco47I	GGWCC	1 cut(s)	705
Eco53kI	GAGCTC	2 cut(s)	11, 486
Eco57I	CTGAAG	2 cut(s)	78, 177
EcoICRI	GAGCTC	2 cut(s)	11, 486
EcoRII	CCWGG	2 cut(s)	232, 807
EcoT38I	GRGCYC	2 cut(s)	13, 488
FaeI	CATG	9 cut(s)	51, 146, 191, 280, 419, 593, 619, 649, 817
FalI	AAGNNNNNCTT	2 cut(s)	324, 356
FatI	CATG	9 cut(s)	47, 142, 187, 276, 415, 589, 615, 645, 813
FbaI	TGATCA	3 cut(s)	370, 612, 631
Fnu4HI	GCNGC	2 cut(s)	222, 359
FokI	GGATG	3 cut(s)	453, 553, 805
FriOI	GRGCYC	2 cut(s)	13, 488
Fsp4HI	GCNGC	2 cut(s)	222, 359
FspBI	CTAG	1 cut(s)	528
GlaI	GCGC	1 cut(s)	296
GluI	GCNGC	2 cut(s)	222, 359
HaeIII	GGCC	1 cut(s)	99
HgaI	GACGC	1 cut(s)	101
HhaI	GCGC	1 cut(s)	297
Hin1I	GRCGYC	1 cut(s)	112
Hin1II	CATG	9 cut(s)	51, 146, 191, 280, 419, 593, 619, 649, 817
Hin6I	GCGC	1 cut(s)	295
HinP1I	GCGC	1 cut(s)	295
HincII	GTYRAC	2 cut(s)	116, 510
HindII	GTYRAC	2 cut(s)	116, 510
HinfI	GANTC	1 cut(s)	506
HphI	GGTGA	3 cut(s)	16, 641, 707
Hpy166II	GTNNAC	2 cut(s)	116, 510
Hpy188I	TCNGA	3 cut(s)	367, 397, 661
Hpy188III	TCNNGA	6 cut(s)	374, 416, 590, 616, 635, 680
Hpy8I	GTNNAC	2 cut(s)	116, 510
HpyAV	CCTTC	2 cut(s)	372, 782
HpyCH4III	ACNGT	3 cut(s)	610, 689, 714
HpyCH4V	TGCA	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 823
Hsp92I	GRCGYC	1 cut(s)	112
Hsp92II	CATG	9 cut(s)	51, 146, 191, 280, 419, 593, 619, 649, 817
HspAI	GCGC	1 cut(s)	295
Ksp22I	TGATCA	3 cut(s)	370, 612, 631
Kzo9I	GATC	5 cut(s)	349, 370, 612, 631, 676
LmnI	GCTCC	4 cut(s)	16, 491, 560, 581
Lsp1109I	GCAGC	2 cut(s)	208, 370
LweI	GCATC	1 cut(s)	433
MabI	ACCWGGT	1 cut(s)	807
MaeI	CTAG	1 cut(s)	528
MaeIII	GTNAC	1 cut(s)	743
MalI	GATC	5 cut(s)	351, 372, 614, 633, 678
MboI	GATC	5 cut(s)	349, 370, 612, 631, 676
MhlI	GDGCHC	2 cut(s)	13, 488
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	8 cut(s)	125, 227, 391, 404, 433, 448, 458, 474
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	1 cut(s)	515
MnlI	CCTC	8 cut(s)	160, 559, 568, 571, 574, 580, 593, 823
Mox20I	TGGCCA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	1 cut(s)	173
MslI	CAYNNNNRTG	2 cut(s)	275, 420
Msp20I	TGGCCA	1 cut(s)	99
MspR9I	CCNGG	2 cut(s)	234, 809
MvaI	CCWGG	2 cut(s)	234, 809
MwoI	GCNNNNNNNGC	2 cut(s)	53, 823
NdeII	GATC	5 cut(s)	349, 370, 612, 631, 676
NlaIII	CATG	9 cut(s)	51, 146, 191, 280, 419, 593, 619, 649, 817
NmuCI	GTSAC	1 cut(s)	743
PagI	TCATGA	3 cut(s)	415, 589, 615
PflMI	CCANNNNNTGG	1 cut(s)	478
PkrI	GCNGC	2 cut(s)	223, 360
PleI	GAGTC	1 cut(s)	514
PpsI	GAGTC	1 cut(s)	514
Psp124BI	GAGCTC	2 cut(s)	13, 488
Psp6I	CCWGG	2 cut(s)	232, 807
PspGI	CCWGG	2 cut(s)	232, 807
PspPI	GGNCC	1 cut(s)	705
PsrI	GAACNNNNNNTAC	2 cut(s)	514, 546
RsaI	GTAC	3 cut(s)	339, 380, 526
RsaNI	GTAC	3 cut(s)	338, 379, 525
RseI	CAYNNNNRTG	2 cut(s)	275, 420
SacI	GAGCTC	2 cut(s)	13, 488
SaqAI	TTAA	1 cut(s)	173
SatI	GCNGC	2 cut(s)	222, 359
Sau3AI	GATC	5 cut(s)	349, 370, 612, 631, 676
Sau96I	GGNCC	1 cut(s)	705
ScaI	AGTACT	2 cut(s)	380, 526
SchI	GAGTC	1 cut(s)	515
ScrFI	CCNGG	2 cut(s)	234, 809
SduI	GDGCHC	2 cut(s)	13, 488
SetI	ASST	7 cut(s)	13, 95, 488, 578, 604, 734, 813
SexAI	ACCWGGT	1 cut(s)	807
SfaNI	GCATC	1 cut(s)	433
SfcI	CTRYAG	2 cut(s)	492, 719
SinI	GGWCC	1 cut(s)	705
SmiMI	CAYNNNNRTG	2 cut(s)	275, 420
SmlI	CTYRAG	1 cut(s)	571
SmoI	CTYRAG	1 cut(s)	571
SpeI	ACTAGT	1 cut(s)	527
Sse9I	AATT	8 cut(s)	125, 227, 391, 404, 433, 448, 458, 474
SsiI	CCGC	1 cut(s)	824
SspMI	CTAG	1 cut(s)	528
SstI	GAGCTC	2 cut(s)	13, 488
StyD4I	CCNGG	2 cut(s)	232, 807
TaaI	ACNGT	3 cut(s)	610, 689, 714
TaqI	TCGA	2 cut(s)	212, 738
TasI	AATT	8 cut(s)	125, 227, 391, 404, 433, 448, 458, 474
TatI	WGTACW	2 cut(s)	378, 524
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TscAI	CASTG	2 cut(s)	160, 694
TseFI	GTSAC	1 cut(s)	743
TseI	GCWGC	2 cut(s)	221, 358
Tsp45I	GTSAC	1 cut(s)	743
TspRI	CASTG	2 cut(s)	160, 694
Van91I	CCANNNNNTGG	1 cut(s)	478
VpaK11BI	GGWCC	1 cut(s)	705
XapI	RAATTY	2 cut(s)	125, 474
XspI	CTAG	1 cut(s)	528
ZrmI	AGTACT	2 cut(s)	380, 526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.