Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0011836

Physical Location & Seq

Genomic Coordinates Reverse (-)

12701583 .. 12702453

Gene Structure 871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1065700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGGAAGAGCTCCTTGCTGTGATAAAAATGGACTCAAGAAAGGTCCATGGACAACTGAAGAAGATGCCATGCTAGTGAATTATATTCAGAAGCATGGACCTGGAAATTGGAGAAACCTTCCAAAGAATGCAGGACTCCAGAGATGCGGGAAGAGTTGCCGCCTCAGATGGACTAACTACCTTAGACCTGATATAAAGAGAGGAAGGTTCTCCTTTGAAGAAGAAGAGACTATAATCCAACTACATAGCATCCTTGGAAACAAGTGGTCAGCTATTGCTGCTCGCTTGCCAGGAAGGACAGACAATGAAATAAAAAAACTACTGGAACACGCACATCCGAAAAAGGCTCCTTCGAATGGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009825 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016049 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0040007 GO:0042221 GO:0042335 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080091 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

122

Amino Acids

13.78

Weight (kDa)

9.81

Isoelectric Point (pI)

38.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	2.3e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 77	3.6e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 105	1.1e-13	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28110 AT4G28110
fragaria_vesca	FvH4_6g44350 FvH4_6g44350 FvH4_6g44350
malus_domestica	MD00G1065700.v1.1 MD17G1086600.v1.1
prunus_persica	Prupe.3G227900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0161281
rosa_laevigata	RLG00000021275
rosa_multiflora	Rmu_ssc0000196.1_g000009
rosa_roxburghii	Rroxscaffold_2G00088950
rosa_rugosa	Rorug02G0487700 Rorug02G0487800
rosa_samantha	Rh2AG554500 Rh2BG567800 Rh2CG538300 Rh2DG577200
rosa_wichuraiana	Rw2G045880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	147, 160
AcuI	CTGAAG	1 cut(s)	78
AfiI	CCNNNNNNNGG	1 cut(s)	356
AgsI	TTSAA	1 cut(s)	218
AjnI	CCWGG	2 cut(s)	100, 289
AluBI	AGCT	2 cut(s)	11, 272
AluI	AGCT	2 cut(s)	11, 272
Alw21I	GWGCWC	1 cut(s)	13
Alw26I	GTCTC	1 cut(s)	221
ApeKI	GCWGC	1 cut(s)	278
AspS9I	GGNCC	2 cut(s)	44, 98
AsuII	TTCGAA	1 cut(s)	353
AvaII	GGWCC	2 cut(s)	44, 98
BanII	GRGCYC	1 cut(s)	13
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	1 cut(s)	265
BccI	CCATC	1 cut(s)	162
BciT130I	CCWGG	2 cut(s)	102, 291
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	1 cut(s)	74
BisI	GCNGC	2 cut(s)	160, 279
BlsI	GCNGC	2 cut(s)	161, 280
Bme1390I	CCNGG	2 cut(s)	102, 291
Bme18I	GGWCC	2 cut(s)	44, 98
BmgT120I	GGNCC	2 cut(s)	44, 98
BmiI	GGNNCC	1 cut(s)	348
BmrFI	CCNGG	2 cut(s)	102, 291
BmsI	GCATC	3 cut(s)	55, 134, 258
BpmI	CTGGAG	1 cut(s)	122
Bpu14I	TTCGAA	1 cut(s)	353
BpuEI	CTTGAG	1 cut(s)	20
BsaJI	CCNNGG	2 cut(s)	47, 253
Bsc4I	CCNNNNNNNGG	1 cut(s)	356
Bse1I	ACTGG	1 cut(s)	327
BseBI	CCWGG	2 cut(s)	102, 291
BseDI	CCNNGG	2 cut(s)	47, 253
BseGI	GGATG	2 cut(s)	249, 334
BseLI	CCNNNNNNNGG	1 cut(s)	356
BseMII	CTCAG	1 cut(s)	178
BseNI	ACTGG	1 cut(s)	327
BseXI	GCAGC	1 cut(s)	265
BsiHKAI	GWGCWC	1 cut(s)	13
BslI	CCNNNNNNNGG	1 cut(s)	356
BsmAI	GTCTC	1 cut(s)	221
BsmI	GAATGC	1 cut(s)	133
Bsp119I	TTCGAA	1 cut(s)	353
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	2 cut(s)	147, 160
BspCNI	CTCAG	1 cut(s)	177
BspLI	GGNNCC	1 cut(s)	348
BspT104I	TTCGAA	1 cut(s)	353
BsrI	ACTGG	1 cut(s)	327
BssECI	CCNNGG	2 cut(s)	47, 253
BssT1I	CCWWGG	2 cut(s)	47, 253
Bst2UI	CCWGG	2 cut(s)	102, 291
Bst6I	CTCTTC	2 cut(s)	146, 219
BstBI	TTCGAA	1 cut(s)	353
BstC8I	GCNNGC	2 cut(s)	283, 287
BstDEI	CTNAG	2 cut(s)	164, 182
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	2 cut(s)	249, 334
BstMAI	GTCTC	1 cut(s)	221
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstNI	CCWGG	2 cut(s)	102, 291
BstSCI	CCNGG	2 cut(s)	100, 289
BstV1I	GCAGC	1 cut(s)	265
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	2 cut(s)	249, 334
Cac8I	GCNNGC	2 cut(s)	283, 287
Cfr13I	GGNCC	2 cut(s)	44, 98
CviAII	CATG	3 cut(s)	48, 70, 95
CviJI	RGCY	3 cut(s)	11, 272, 347
CviKI_1	RGCY	3 cut(s)	11, 272, 347
DdeI	CTNAG	2 cut(s)	164, 182
Eam1104I	CTCTTC	2 cut(s)	146, 219
EarI	CTCTTC	2 cut(s)	146, 219
Ecl136II	GAGCTC	1 cut(s)	11
Eco130I	CCWWGG	2 cut(s)	47, 253
Eco24I	GRGCYC	1 cut(s)	13
Eco47I	GGWCC	2 cut(s)	44, 98
Eco53kI	GAGCTC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	78
EcoICRI	GAGCTC	1 cut(s)	11
EcoRII	CCWGG	2 cut(s)	100, 289
EcoT14I	CCWWGG	2 cut(s)	47, 253
EcoT38I	GRGCYC	1 cut(s)	13
ErhI	CCWWGG	2 cut(s)	47, 253
FaeI	CATG	3 cut(s)	51, 73, 98
FaiI	YATR	7 cut(s)	49, 71, 84, 96, 194, 233, 246
FalI	AAGNNNNNCTT	1 cut(s)	30
FatI	CATG	3 cut(s)	47, 69, 94
FauI	CCCGC	1 cut(s)	140
Fnu4HI	GCNGC	2 cut(s)	160, 279
FokI	GGATG	2 cut(s)	236, 321
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	2 cut(s)	160, 279
FspBI	CTAG	1 cut(s)	74
GluI	GCNGC	2 cut(s)	160, 279
GsuI	CTGGAG	1 cut(s)	122
Hin1II	CATG	3 cut(s)	51, 73, 98
HinfI	GANTC	2 cut(s)	33, 135
Hpy188I	TCNGA	3 cut(s)	90, 167, 339
Hpy188III	TCNNGA	2 cut(s)	37, 139
HpyAV	CCTTC	4 cut(s)	128, 198, 288, 360
HpyCH4V	TGCA	1 cut(s)	131
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	2 cut(s)	164, 182
Hsp92II	CATG	3 cut(s)	51, 73, 98
LmnI	GCTCC	2 cut(s)	16, 352
LpnPI	CCDG	8 cut(s)	87, 114, 117, 152, 201, 276, 303, 308
Lsp1109I	GCAGC	1 cut(s)	265
LweI	GCATC	3 cut(s)	55, 134, 258
MaeI	CTAG	1 cut(s)	74
MboII	GAAGA	7 cut(s)	18, 71, 74, 163, 230, 233, 236
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	3 cut(s)	79, 106, 361
MlyI	GAGTC	2 cut(s)	27, 129
MmeI	TCCRAC	1 cut(s)	262
MnlI	CCTC	2 cut(s)	173, 194
MslI	CAYNNNNRTG	1 cut(s)	74
MspR9I	CCNGG	2 cut(s)	102, 291
Mva1269I	GAATGC	1 cut(s)	133
MvaI	CCWGG	2 cut(s)	102, 291
MwoI	GCNNNNNNNGC	1 cut(s)	278
NcoI	CCATGG	1 cut(s)	47
NlaIII	CATG	3 cut(s)	51, 73, 98
NlaIV	GGNNCC	1 cut(s)	348
NspV	TTCGAA	1 cut(s)	353
PctI	GAATGC	1 cut(s)	133
PkrI	GCNGC	2 cut(s)	161, 280
PleI	GAGTC	2 cut(s)	27, 129
PpsI	GAGTC	2 cut(s)	27, 129
Psp124BI	GAGCTC	1 cut(s)	13
Psp6I	CCWGG	2 cut(s)	100, 289
PspGI	CCWGG	2 cut(s)	100, 289
PspN4I	GGNNCC	1 cut(s)	348
PspPI	GGNCC	2 cut(s)	44, 98
RseI	CAYNNNNRTG	1 cut(s)	74
SacI	GAGCTC	1 cut(s)	13
SatI	GCNGC	2 cut(s)	160, 279
Sau96I	GGNCC	2 cut(s)	44, 98
SchI	GAGTC	2 cut(s)	27, 129
ScrFI	CCNGG	2 cut(s)	102, 291
SduI	GDGCHC	1 cut(s)	13
SetI	ASST	8 cut(s)	13, 46, 103, 120, 183, 190, 209, 274
SfaNI	GCATC	3 cut(s)	55, 134, 258
SfuI	TTCGAA	1 cut(s)	353
SinI	GGWCC	2 cut(s)	44, 98
SmiMI	CAYNNNNRTG	1 cut(s)	74
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	3 cut(s)	79, 106, 361
SsiI	CCGC	2 cut(s)	147, 160
SspMI	CTAG	1 cut(s)	74
SstI	GAGCTC	1 cut(s)	13
StyD4I	CCNGG	2 cut(s)	100, 289
StyI	CCWWGG	2 cut(s)	47, 253
TaqI	TCGA	1 cut(s)	353
TasI	AATT	3 cut(s)	79, 106, 361
TauI	GCSGC	1 cut(s)	162
TseI	GCWGC	1 cut(s)	278
TspDTI	ATGAA	1 cut(s)	321
VpaK11BI	GGWCC	2 cut(s)	44, 98
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.