Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0011836

Physical Location & Seq

Genomic Coordinates Reverse (-)

7134529 .. 7135856

Gene Structure 1328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1086600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGTGAGAGCGCCCTTCTATGACAAAAATGGGCAAAAGAAAGGAGCATGGAGTCCTGAAGAAGACAATATGTTAAAAGCTTATGTTGATAAGCACGGTCACAAGAACTGGCGTGCACTTCCCAAACTTGCTGGTTTAGCAAGGTGTGGTAAAAGTTGCAGACTAAGATGGACGAACTATCTTCAACCGGGTGTAAAACGGGGAAACTACTCTCAAGAAGAAAACAATTTGATCATCAAATTACATGAAGAATTCGGGAATAAATGGTCAATGATTGCTGCTAAATTACCAGGAAGAACAGACAATGATATTAAAAATCATTGGCATACCTATTTTAAGAAGCTCACAAAGCAAAATTCAACAGCACTATCTCAAACGACAGAGCAATCAAGTGATGCCCCATCAGTAACTAGCCAAAATACAGAATTGGGAGCTCAAAGTGCTCCTAAACATGATAATAATGGTCACCAAATTTTGGAGAGCTCTCCGTTGTCCCCTGAAACATTTTCCAGTGGCCAATCCTTGAGCTCCAACATAAATCATGGACATGATCAACCTATCGTGAGTTATTTCTCTGCTGAAGATGGTACTCTAGCTTCATCAGAAACAATATTAGACAAATCGAGTGGAGATTTTTGGACCGAACCATTTCAGCCGGACAATATGATGAATGACGTCCAAAGTGAGTACTATCCAATTACATACCTGAGGGAGGAGGGAATTTTATCATCACCATTTTTAACGTTCTACGATACTCATGATGGTATGGATTGGTTCCACCATGTGATGCCAACATTGCAAGACAATTATTTAATTAATGATGCAGACTACTTAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

280

Amino Acids

31.75

Weight (kDa)

5.82

Isoelectric Point (pI)

61.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	2.2e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 75	3e-10	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	7.9e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 114	3e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28110 AT4G28110
fragaria_vesca	FvH4_6g44350 FvH4_6g44350 FvH4_6g44350
malus_domestica	MD00G1065700.v1.1 MD17G1086600.v1.1
prunus_persica	Prupe.3G227900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0161281
rosa_laevigata	RLG00000021275
rosa_multiflora	Rmu_ssc0000196.1_g000009
rosa_roxburghii	Rroxscaffold_2G00088950
rosa_rugosa	Rorug02G0487700 Rorug02G0487800
rosa_samantha	Rh2AG554500 Rh2BG567800 Rh2CG538300 Rh2DG577200
rosa_wichuraiana	Rw2G045880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	678
AccB7I	CCANNNNNTGG	1 cut(s)	475
AclI	AACGTT	1 cut(s)	743
AcoI	YGGCCR	1 cut(s)	514
AcsI	RAATTY	4 cut(s)	251, 355, 471, 720
AcuI	CTGAAG	2 cut(s)	78, 600
AcyI	GRCGYC	1 cut(s)	675
AdeI	CACNNNGTG	1 cut(s)	784
AfaI	GTAC	2 cut(s)	589, 689
AfiI	CCNNNNNNNGG	2 cut(s)	475, 712
AflII	CTTAAG	1 cut(s)	832
AgsI	TTSAA	2 cut(s)	185, 360
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	6 cut(s)	80, 343, 434, 483, 528, 596
AluI	AGCT	6 cut(s)	80, 343, 434, 483, 528, 596
Alw21I	GWGCWC	5 cut(s)	118, 436, 445, 485, 530
Alw44I	GTGCAC	1 cut(s)	114
AoxI	GGCC	1 cut(s)	514
ApaLI	GTGCAC	1 cut(s)	114
ApeKI	GCWGC	1 cut(s)	278
ApoI	RAATTY	4 cut(s)	251, 355, 471, 720
AseI	ATTAAT	1 cut(s)	816
Asp700I	GAANNNNTTC	1 cut(s)	648
AspLEI	GCGC	1 cut(s)	13
AspS9I	GGNCC	1 cut(s)	639
AsuC2I	CCSGG	1 cut(s)	189
AsuHPI	GGTGA	3 cut(s)	16, 458, 723
AvaII	GGWCC	1 cut(s)	639
AxyI	CCTNAGG	1 cut(s)	707
BaeGI	GKGCMC	1 cut(s)	118
BalI	TGGCCA	1 cut(s)	516
BanII	GRGCYC	3 cut(s)	436, 485, 530
BarI	GAAGNNNNNNTAC	2 cut(s)	580, 612
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	5 cut(s)	118, 436, 445, 485, 530
BbvI	GCAGC	1 cut(s)	265
BccI	CCATC	4 cut(s)	162, 409, 578, 755
BciT130I	CCWGG	1 cut(s)	291
BclI	TGATCA	2 cut(s)	231, 550
BcnI	CCSGG	1 cut(s)	189
BfaI	CTAG	2 cut(s)	411, 593
BfoI	RGCGCY	1 cut(s)	14
BfrI	CTTAAG	1 cut(s)	832
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
BmcAI	AGTACT	1 cut(s)	689
Bme1390I	CCNGG	2 cut(s)	189, 291
Bme18I	GGWCC	1 cut(s)	639
BmgT120I	GGNCC	1 cut(s)	639
BmiI	GGNNCC	1 cut(s)	776
BmrFI	CCNGG	2 cut(s)	189, 291
BmsI	GCATC	3 cut(s)	385, 777, 811
BpiI	GAAGAC	1 cut(s)	69
BpuEI	CTTGAG	2 cut(s)	198, 544
BpuMI	CCSGG	1 cut(s)	189
BsaHI	GRCGYC	1 cut(s)	675
Bsc4I	CCNNNNNNNGG	2 cut(s)	475, 712
Bse1I	ACTGG	2 cut(s)	113, 510
Bse21I	CCTNAGG	1 cut(s)	707
Bse3DI	GCAATG	1 cut(s)	794
BseBI	CCWGG	1 cut(s)	291
BseLI	CCNNNNNNNGG	2 cut(s)	475, 712
BseMI	GCAATG	1 cut(s)	794
BseMII	CTCAG	1 cut(s)	698
BseNI	ACTGG	2 cut(s)	113, 510
BseRI	GAGGAG	1 cut(s)	728
BseSI	GKGCMC	1 cut(s)	118
BseXI	GCAGC	1 cut(s)	265
BshFI	GGCC	1 cut(s)	516
BsiHKAI	GWGCWC	5 cut(s)	118, 436, 445, 485, 530
BsiSI	CCGG	2 cut(s)	188, 656
BslFI	GGGAC	1 cut(s)	478
BslI	CCNNNNNNNGG	2 cut(s)	475, 712
BsmFI	GGGAC	1 cut(s)	478
BsnI	GGCC	1 cut(s)	516
Bsp1286I	GDGCHC	5 cut(s)	118, 436, 445, 485, 530
Bsp143I	GATC	2 cut(s)	231, 550
BspANI	GGCC	1 cut(s)	516
BspCNI	CTCAG	1 cut(s)	699
BspHI	TCATGA	1 cut(s)	757
BspLI	GGNNCC	1 cut(s)	776
BspTI	CTTAAG	1 cut(s)	832
BsrDI	GCAATG	1 cut(s)	794
BsrI	ACTGG	2 cut(s)	113, 510
BssMI	GATC	2 cut(s)	231, 550
BssNI	GRCGYC	1 cut(s)	675
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	1 cut(s)	98
BstACI	GRCGYC	1 cut(s)	675
BstAFI	CTTAAG	1 cut(s)	832
BstC8I	GCNNGC	1 cut(s)	114
BstDEI	CTNAG	2 cut(s)	164, 707
BstEII	GGTNACC	1 cut(s)	464
BstENI	CCTNNNNNAGG	1 cut(s)	710
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	13
BstKTI	GATC	2 cut(s)	234, 553
BstMBI	GATC	2 cut(s)	231, 550
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 349, 440, 796
BstNI	CCWGG	1 cut(s)	291
BstPI	GGTNACC	1 cut(s)	464
BstSCI	CCNGG	2 cut(s)	187, 289
BstSLI	GKGCMC	1 cut(s)	118
BstV1I	GCAGC	1 cut(s)	265
BstV2I	GAAGAC	1 cut(s)	69
Bsu36I	CCTNAGG	1 cut(s)	707
BsuRI	GGCC	1 cut(s)	516
BtsIMutI	CAGTG	1 cut(s)	517
Cac8I	GCNNGC	1 cut(s)	114
CciI	TCATGA	1 cut(s)	757
CfoI	GCGC	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	639
Csp6I	GTAC	2 cut(s)	588, 688
CspCI	CAANNNNNGTGG	2 cut(s)	607, 642
CviAII	CATG	7 cut(s)	48, 245, 452, 542, 548, 758, 782
CviJI	RGCY	9 cut(s)	80, 343, 414, 434, 483, 516, 528, 596, 655
CviKI_1	RGCY	9 cut(s)	80, 343, 414, 434, 483, 516, 528, 596, 655
CviQI	GTAC	2 cut(s)	588, 688
DdeI	CTNAG	2 cut(s)	164, 707
DpnI	GATC	2 cut(s)	233, 552
DpnII	GATC	2 cut(s)	231, 550
DraIII	CACNNNGTG	1 cut(s)	784
EaeI	YGGCCR	1 cut(s)	514
Ecl136II	GAGCTC	3 cut(s)	434, 483, 528
Eco24I	GRGCYC	3 cut(s)	436, 485, 530
Eco47I	GGWCC	1 cut(s)	639
Eco53kI	GAGCTC	3 cut(s)	434, 483, 528
Eco57I	CTGAAG	2 cut(s)	78, 600
Eco81I	CCTNAGG	1 cut(s)	707
Eco91I	GGTNACC	1 cut(s)	464
EcoICRI	GAGCTC	3 cut(s)	434, 483, 528
EcoNI	CCTNNNNNAGG	1 cut(s)	710
EcoO65I	GGTNACC	1 cut(s)	464
EcoRI	GAATTC	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	289
EcoT38I	GRGCYC	3 cut(s)	436, 485, 530
FaeI	CATG	7 cut(s)	51, 248, 455, 545, 551, 761, 785
FaqI	GGGAC	1 cut(s)	478
FatI	CATG	7 cut(s)	47, 244, 451, 541, 547, 757, 781
FbaI	TGATCA	2 cut(s)	231, 550
Fnu4HI	GCNGC	1 cut(s)	279
FriOI	GRGCYC	3 cut(s)	436, 485, 530
Fsp4HI	GCNGC	1 cut(s)	279
FspBI	CTAG	2 cut(s)	411, 593
GlaI	GCGC	1 cut(s)	12
GluI	GCNGC	1 cut(s)	279
HaeII	RGCGCY	1 cut(s)	14
HaeIII	GGCC	1 cut(s)	516
HapII	CCGG	2 cut(s)	188, 656
HhaI	GCGC	1 cut(s)	13
Hin1I	GRCGYC	1 cut(s)	675
Hin1II	CATG	7 cut(s)	51, 248, 455, 545, 551, 761, 785
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HindIII	AAGCTT	1 cut(s)	78
HinfI	GANTC	1 cut(s)	52
HpaII	CCGG	2 cut(s)	188, 656
HphI	GGTGA	3 cut(s)	16, 458, 723
Hpy166II	GTNNAC	1 cut(s)	116
Hpy188I	TCNGA	1 cut(s)	604
Hpy188III	TCNNGA	5 cut(s)	56, 215, 256, 562, 758
Hpy8I	GTNNAC	1 cut(s)	116
HpyAV	CCTTC	1 cut(s)	25
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4IV	ACGT	2 cut(s)	675, 743
HpyCH4V	TGCA	4 cut(s)	116, 159, 799, 824
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 349, 440, 796
HpyF3I	CTNAG	2 cut(s)	164, 707
HpySE526I	ACGT	2 cut(s)	675, 743
Hsp92I	GRCGYC	1 cut(s)	675
Hsp92II	CATG	7 cut(s)	51, 248, 455, 545, 551, 761, 785
HspAI	GCGC	1 cut(s)	11
Ksp22I	TGATCA	2 cut(s)	231, 550
Kzo9I	GATC	2 cut(s)	231, 550
LmnI	GCTCC	4 cut(s)	44, 431, 448, 533
Lsp1109I	GCAGC	1 cut(s)	265
LweI	GCATC	3 cut(s)	385, 777, 811
MaeI	CTAG	2 cut(s)	411, 593
MaeII	ACGT	2 cut(s)	675, 743
MaeIII	GTNAC	3 cut(s)	98, 406, 464
MalI	GATC	2 cut(s)	233, 552
MboI	GATC	2 cut(s)	231, 550
MboII	GAAGA	7 cut(s)	71, 74, 173, 230, 260, 306, 593
MhlI	GDGCHC	5 cut(s)	118, 436, 445, 485, 530
MlsI	TGGCCA	1 cut(s)	516
MluNI	TGGCCA	1 cut(s)	516
MlyI	GAGTC	1 cut(s)	61
MmeI	TCCRAC	1 cut(s)	555
MnlI	CCTC	3 cut(s)	702, 706, 709
Mox20I	TGGCCA	1 cut(s)	516
MroXI	GAANNNNTTC	1 cut(s)	648
MscI	TGGCCA	1 cut(s)	516
MseI	TTAA	7 cut(s)	74, 312, 336, 740, 812, 816, 833
MslI	CAYNNNNRTG	1 cut(s)	546
Msp20I	TGGCCA	1 cut(s)	516
MspCI	CTTAAG	1 cut(s)	832
MspI	CCGG	2 cut(s)	188, 656
MspR9I	CCNGG	2 cut(s)	189, 291
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	4 cut(s)	137, 349, 440, 796
NciI	CCSGG	1 cut(s)	189
NdeII	GATC	2 cut(s)	231, 550
NlaIII	CATG	7 cut(s)	51, 248, 455, 545, 551, 761, 785
NlaIV	GGNNCC	1 cut(s)	776
NmuCI	GTSAC	2 cut(s)	98, 464
PacI	TTAATTAA	1 cut(s)	816
PagI	TCATGA	1 cut(s)	757
PdmI	GAANNNNTTC	1 cut(s)	648
PflMI	CCANNNNNTGG	1 cut(s)	475
PkrI	GCNGC	1 cut(s)	280
PleI	GAGTC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	60
PshBI	ATTAAT	1 cut(s)	816
Psp124BI	GAGCTC	3 cut(s)	436, 485, 530
Psp1406I	AACGTT	1 cut(s)	743
Psp6I	CCWGG	1 cut(s)	289
PspEI	GGTNACC	1 cut(s)	464
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	1 cut(s)	776
PspPI	GGNCC	1 cut(s)	639
RsaI	GTAC	2 cut(s)	589, 689
RsaNI	GTAC	2 cut(s)	588, 688
RseI	CAYNNNNRTG	1 cut(s)	546
SacI	GAGCTC	3 cut(s)	436, 485, 530
SaqAI	TTAA	7 cut(s)	74, 312, 336, 740, 812, 816, 833
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	2 cut(s)	231, 550
Sau96I	GGNCC	1 cut(s)	639
ScaI	AGTACT	1 cut(s)	689
SchI	GAGTC	1 cut(s)	61
ScrFI	CCNGG	2 cut(s)	189, 291
SduI	GDGCHC	5 cut(s)	118, 436, 445, 485, 530
SfaNI	GCATC	3 cut(s)	385, 777, 811
SinI	GGWCC	1 cut(s)	639
SmiMI	CAYNNNNRTG	1 cut(s)	546
SmlI	CTYRAG	3 cut(s)	213, 523, 832
SmoI	CTYRAG	3 cut(s)	213, 523, 832
SspI	AATATT	1 cut(s)	612
SspMI	CTAG	2 cut(s)	411, 593
SstI	GAGCTC	3 cut(s)	436, 485, 530
StyD4I	CCNGG	2 cut(s)	187, 289
TaaI	ACNGT	1 cut(s)	98
TaiI	ACGT	2 cut(s)	678, 746
TaqI	TCGA	1 cut(s)	623
TaqII	GACCGA	1 cut(s)	656
TatI	WGTACW	1 cut(s)	687
Tru1I	TTAA	7 cut(s)	74, 312, 336, 740, 812, 816, 833
Tru9I	TTAA	7 cut(s)	74, 312, 336, 740, 812, 816, 833
TscAI	CASTG	1 cut(s)	517
TseFI	GTSAC	2 cut(s)	98, 464
TseI	GCWGC	1 cut(s)	278
Tsp45I	GTSAC	2 cut(s)	98, 464
TspDTI	ATGAA	3 cut(s)	261, 588, 683
TspGWI	ACGGA	1 cut(s)	477
TspRI	CASTG	1 cut(s)	517
Van91I	CCANNNNNTGG	1 cut(s)	475
Vha464I	CTTAAG	1 cut(s)	832
VneI	GTGCAC	1 cut(s)	114
VpaK11BI	GGWCC	1 cut(s)	639
VspI	ATTAAT	1 cut(s)	816
XagI	CCTNNNNNAGG	1 cut(s)	710
XapI	RAATTY	4 cut(s)	251, 355, 471, 720
XmnI	GAANNNNTTC	1 cut(s)	648
XspI	CTAG	2 cut(s)	411, 593
ZraI	GACGTC	1 cut(s)	676
ZrmI	AGTACT	1 cut(s)	689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.