Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0011836

Physical Location & Seq

Genomic Coordinates Forward (+)

34171031 .. 34172683

Gene Structure 1653 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g44350.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGTGAGAGCTCCATTCTATGACAAAAGTGGAGTAAAGAAAGGGGCATGGGATGCTGAAGAAGACGATAAGTTAAGAAGTTATATCCAAAGCTATGGCCATTGGAACTGGCGTCAACTTCCGAAATATGCAGGTATATCAAGGTGTGGGAAAAGCTGCAGACTAAGATGGAAGAACTACCTTCAACCAGGTGTAAAACATGGAGATTACACTGAAGAAGAAGAGGCTTTAATCATCAAACTACATGAACAACTTGGGAATAGATGGTCGATGATTGCTTCAAAATTACCAGGAAGAACTGACAATGAAATAAAAAATTATTGGCACACCCACATGAAGAAGAAGCGCACAAAAGAAGAACAAAATCAAACATCCTCTGGTCATGTAGTACTTCCGAAAGATCATCAGCATTCTCGTGATGATCACGAGTACTCATCACGGCAAATCGATTCAGACGATCAAACAGAGGCTCATGAAAGTGCTACTCGTAATTGTAATGATGCTTGTCAACAACTACTTCATCCCCAAAGCTCCTCTGCTGTGTCCCCAGAATCAACATCGTCTAGTAGTACTAGCTCAGCACAGTATACCTCCTCCTCCTCAAGCTCCCTTAATCATGAAGCACGAGATTCTACCGTGTTCATGAACTATCTTATTGTCGATCGAGATATTGTCATGGTTTCATCATCAGAAACAATGATATCAGATCAACAATACAATGCTGGTGATTTTTGGAGCACACCGTTTCTACAGGACAGTATCTCCATCGAAAGTGACATTATATCATCCTCATCATCGTACTTGTTGCCCTATGATGAAGGCATGGATTTGTTCTACCAAGTCATGCCAACACCGCAAGACGATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

290

Amino Acids

33.03

Weight (kDa)

5.43

Isoelectric Point (pI)

68.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28110 AT4G28110
fragaria_vesca	FvH4_6g44350 FvH4_6g44350 FvH4_6g44350
malus_domestica	MD00G1065700.v1.1 MD17G1086600.v1.1
prunus_persica	Prupe.3G227900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0161281
rosa_laevigata	RLG00000021275
rosa_multiflora	Rmu_ssc0000196.1_g000009
rosa_roxburghii	Rroxscaffold_2G00088950
rosa_rugosa	Rorug02G0487700 Rorug02G0487800
rosa_samantha	Rh2AG554500 Rh2BG567800 Rh2CG538300 Rh2DG577200
rosa_wichuraiana	Rw2G045880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	587
AciI	CCGC	1 cut(s)	854
AcoI	YGGCCR	1 cut(s)	97
AcuI	CTGAAG	2 cut(s)	78, 234
AcyI	GRCGYC	1 cut(s)	112
AfaI	GTAC	4 cut(s)	390, 431, 571, 800
AgsI	TTSAA	2 cut(s)	185, 282
AjnI	CCWGG	2 cut(s)	187, 289
AluBI	AGCT	6 cut(s)	11, 93, 156, 531, 576, 606
AluI	AGCT	6 cut(s)	11, 93, 156, 531, 576, 606
Alw21I	GWGCWC	2 cut(s)	13, 740
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	1 cut(s)	156
AspLEI	GCGC	1 cut(s)	348
AsuHPI	GGTGA	2 cut(s)	16, 737
BalI	TGGCCA	1 cut(s)	99
BanII	GRGCYC	1 cut(s)	13
BauI	CACGAG	3 cut(s)	414, 425, 624
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	2 cut(s)	13, 740
BbvI	GCAGC	1 cut(s)	143
BccI	CCATC	3 cut(s)	162, 258, 773
BceAI	ACGGC	1 cut(s)	455
BciT130I	CCWGG	2 cut(s)	189, 291
BclI	TGATCA	1 cut(s)	421
BfaI	CTAG	2 cut(s)	564, 573
BfmI	CTRYAG	2 cut(s)	157, 749
BfuAI	ACCTGC	1 cut(s)	122
BisI	GCNGC	1 cut(s)	157
BlpI	GCTNAGC	1 cut(s)	577
BlsI	GCNGC	1 cut(s)	158
BmcAI	AGTACT	3 cut(s)	390, 431, 571
Bme1390I	CCNGG	2 cut(s)	189, 291
BmrFI	CCNGG	2 cut(s)	189, 291
BmsI	GCATC	2 cut(s)	43, 490
BpiI	GAAGAC	1 cut(s)	69
Bpu1102I	GCTNAGC	1 cut(s)	577
BpuEI	CTTGAG	1 cut(s)	586
Bsa29I	ATCGAT	1 cut(s)	447
BsaHI	GRCGYC	1 cut(s)	112
BsaXI	ACNNNNNCTCC	2 cut(s)	746, 776
Bse1I	ACTGG	1 cut(s)	113
BseBI	CCWGG	2 cut(s)	189, 291
BseCI	ATCGAT	1 cut(s)	447
BseGI	GGATG	4 cut(s)	58, 371, 520, 785
BseMII	CTCAG	1 cut(s)	591
BseNI	ACTGG	1 cut(s)	113
BseRI	GAGGAG	4 cut(s)	523, 583, 586, 589
BseXI	GCAGC	1 cut(s)	143
Bsh1285I	CGRYCG	1 cut(s)	664
BshFI	GGCC	1 cut(s)	99
BshVI	ATCGAT	1 cut(s)	447
BsiEI	CGRYCG	1 cut(s)	664
BsiHKAI	GWGCWC	2 cut(s)	13, 740
BslFI	GGGAC	1 cut(s)	529
BsmFI	GGGAC	1 cut(s)	529
BsmI	GAATGC	1 cut(s)	409
BsnI	GGCC	1 cut(s)	99
Bsp1286I	GDGCHC	2 cut(s)	13, 740
Bsp143I	GATC	5 cut(s)	400, 421, 457, 661, 706
Bsp1720I	GCTNAGC	1 cut(s)	577
BspACI	CCGC	1 cut(s)	854
BspANI	GGCC	1 cut(s)	99
BspCNI	CTCAG	1 cut(s)	590
BspDI	ATCGAT	1 cut(s)	447
BspHI	TCATGA	3 cut(s)	472, 616, 642
BspMAI	CTGCAG	1 cut(s)	161
BspMI	ACCTGC	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	113
BssMI	GATC	5 cut(s)	400, 421, 457, 661, 706
BssNAI	GTATAC	1 cut(s)	588
BssNI	GRCGYC	1 cut(s)	112
BssSI	CACGAG	3 cut(s)	414, 425, 624
Bst1107I	GTATAC	1 cut(s)	588
Bst2BI	CACGAG	3 cut(s)	414, 425, 624
Bst2UI	CCWGG	2 cut(s)	189, 291
Bst4CI	ACNGT	4 cut(s)	585, 637, 744, 758
Bst6I	CTCTTC	1 cut(s)	216
BstACI	GRCGYC	1 cut(s)	112
BstAPI	GCANNNNNTGC	1 cut(s)	53
BstDEI	CTNAG	2 cut(s)	164, 577
BstF5I	GGATG	4 cut(s)	58, 371, 520, 785
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	5 cut(s)	403, 424, 460, 664, 709
BstMBI	GATC	5 cut(s)	400, 421, 457, 661, 706
BstMCI	CGRYCG	1 cut(s)	664
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 853
BstNI	CCWGG	2 cut(s)	189, 291
BstSCI	CCNGG	2 cut(s)	187, 289
BstSFI	CTRYAG	2 cut(s)	157, 749
BstV1I	GCAGC	1 cut(s)	143
BstV2I	GAAGAC	1 cut(s)	69
BstXI	CCANNNNNNTGG	1 cut(s)	95
BstZ17I	GTATAC	1 cut(s)	588
Bsu15I	ATCGAT	1 cut(s)	447
BsuRI	GGCC	1 cut(s)	99
BsuTUI	ATCGAT	1 cut(s)	447
BtsCI	GGATG	4 cut(s)	58, 371, 520, 785
BtsIMutI	CAGTG	1 cut(s)	210
BveI	ACCTGC	1 cut(s)	122
CciI	TCATGA	3 cut(s)	472, 616, 642
CfoI	GCGC	1 cut(s)	348
ClaI	ATCGAT	1 cut(s)	447
CseI	GACGC	1 cut(s)	101
CsiI	ACCWGGT	1 cut(s)	187
Csp6I	GTAC	4 cut(s)	389, 430, 570, 799
CviJI	RGCY	9 cut(s)	11, 93, 99, 156, 227, 470, 531, 576, 606
CviKI_1	RGCY	9 cut(s)	11, 93, 99, 156, 227, 470, 531, 576, 606
CviQI	GTAC	4 cut(s)	389, 430, 570, 799
DdeI	CTNAG	2 cut(s)	164, 577
DpnI	GATC	5 cut(s)	402, 423, 459, 663, 708
DpnII	GATC	5 cut(s)	400, 421, 457, 661, 706
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Ecl136II	GAGCTC	1 cut(s)	11
Eco24I	GRGCYC	1 cut(s)	13
Eco32I	GATATC	1 cut(s)	702
Eco53kI	GAGCTC	1 cut(s)	11
Eco57I	CTGAAG	2 cut(s)	78, 234
EcoICRI	GAGCTC	1 cut(s)	11
EcoRII	CCWGG	2 cut(s)	187, 289
EcoRV	GATATC	1 cut(s)	702
EcoT38I	GRGCYC	1 cut(s)	13
FaqI	GGGAC	1 cut(s)	529
FbaI	TGATCA	1 cut(s)	421
FblI	GTMKAC	1 cut(s)	587
Fnu4HI	GCNGC	1 cut(s)	157
FokI	GGATG	4 cut(s)	65, 358, 507, 772
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	1 cut(s)	157
FspBI	CTAG	2 cut(s)	564, 573
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	1 cut(s)	157
HaeIII	GGCC	1 cut(s)	99
HgaI	GACGC	1 cut(s)	101
HhaI	GCGC	1 cut(s)	348
Hin1I	GRCGYC	1 cut(s)	112
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HincII	GTYRAC	2 cut(s)	116, 509
HindII	GTYRAC	2 cut(s)	116, 509
HinfI	GANTC	3 cut(s)	449, 551, 629
HphI	GGTGA	2 cut(s)	16, 737
Hpy166II	GTNNAC	3 cut(s)	116, 509, 588
Hpy188I	TCNGA	5 cut(s)	123, 396, 454, 691, 706
Hpy188III	TCNNGA	6 cut(s)	416, 425, 473, 617, 643, 665
Hpy8I	GTNNAC	3 cut(s)	116, 509, 588
HpyAV	CCTTC	2 cut(s)	191, 812
HpyCH4III	ACNGT	4 cut(s)	585, 637, 744, 758
HpyCH4V	TGCA	2 cut(s)	131, 159
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 853
HpyF3I	CTNAG	2 cut(s)	164, 577
Hsp92I	GRCGYC	1 cut(s)	112
HspAI	GCGC	1 cut(s)	346
Ksp22I	TGATCA	1 cut(s)	421
Kzo9I	GATC	5 cut(s)	400, 421, 457, 661, 706
LmnI	GCTCC	4 cut(s)	16, 536, 611, 735
Lsp1109I	GCAGC	1 cut(s)	143
LweI	GCATC	2 cut(s)	43, 490
MabI	ACCWGGT	1 cut(s)	187
MaeI	CTAG	2 cut(s)	564, 573
MaeIII	GTNAC	1 cut(s)	773
MalI	GATC	5 cut(s)	402, 423, 459, 663, 708
MboI	GATC	5 cut(s)	400, 421, 457, 661, 706
MhlI	GDGCHC	2 cut(s)	13, 740
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	3 cut(s)	284, 316, 490
MluNI	TGGCCA	1 cut(s)	99
MnlI	CCTC	9 cut(s)	217, 385, 460, 544, 601, 604, 607, 610, 799
Mox20I	TGGCCA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	3 cut(s)	74, 230, 612
MslI	CAYNNNNRTG	3 cut(s)	332, 414, 477
Msp20I	TGGCCA	1 cut(s)	99
MspR9I	CCNGG	2 cut(s)	189, 291
Mva1269I	GAATGC	1 cut(s)	409
MvaI	CCWGG	2 cut(s)	189, 291
MwoI	GCNNNNNNNGC	2 cut(s)	53, 853
NdeII	GATC	5 cut(s)	400, 421, 457, 661, 706
NmuCI	GTSAC	1 cut(s)	773
PagI	TCATGA	3 cut(s)	472, 616, 642
PcsI	WCGNNNNNNNCGW	1 cut(s)	453
PctI	GAATGC	1 cut(s)	409
PfeI	GAWTC	3 cut(s)	449, 551, 629
PkrI	GCNGC	1 cut(s)	158
Ple19I	CGATCG	1 cut(s)	664
Psp124BI	GAGCTC	1 cut(s)	13
Psp6I	CCWGG	2 cut(s)	187, 289
PspGI	CCWGG	2 cut(s)	187, 289
PstI	CTGCAG	1 cut(s)	161
PvuI	CGATCG	1 cut(s)	664
RsaI	GTAC	4 cut(s)	390, 431, 571, 800
RsaNI	GTAC	4 cut(s)	389, 430, 570, 799
RseI	CAYNNNNRTG	3 cut(s)	332, 414, 477
SacI	GAGCTC	1 cut(s)	13
SaqAI	TTAA	3 cut(s)	74, 230, 612
SatI	GCNGC	1 cut(s)	157
Sau3AI	GATC	5 cut(s)	400, 421, 457, 661, 706
ScaI	AGTACT	3 cut(s)	390, 431, 571
ScrFI	CCNGG	2 cut(s)	189, 291
SduI	GDGCHC	2 cut(s)	13, 740
SexAI	ACCWGGT	1 cut(s)	187
SfaNI	GCATC	2 cut(s)	43, 490
SfcI	CTRYAG	2 cut(s)	157, 749
SmiMI	CAYNNNNRTG	3 cut(s)	332, 414, 477
SmlI	CTYRAG	1 cut(s)	601
SmoI	CTYRAG	1 cut(s)	601
Sse9I	AATT	3 cut(s)	284, 316, 490
SsiI	CCGC	1 cut(s)	854
SspMI	CTAG	2 cut(s)	564, 573
SstI	GAGCTC	1 cut(s)	13
StyD4I	CCNGG	2 cut(s)	187, 289
TaaI	ACNGT	4 cut(s)	585, 637, 744, 758
TaqI	TCGA	5 cut(s)	269, 447, 660, 664, 768
TasI	AATT	3 cut(s)	284, 316, 490
TatI	WGTACW	3 cut(s)	388, 429, 569
TfiI	GAWTC	3 cut(s)	449, 551, 629
Tru1I	TTAA	3 cut(s)	74, 230, 612
Tru9I	TTAA	3 cut(s)	74, 230, 612
TscAI	CASTG	1 cut(s)	217
TseFI	GTSAC	1 cut(s)	773
TseI	GCWGC	1 cut(s)	156
Tsp45I	GTSAC	1 cut(s)	773
TspRI	CASTG	1 cut(s)	217
XmiI	GTMKAC	1 cut(s)	587
XspI	CTAG	2 cut(s)	564, 573
ZrmI	AGTACT	3 cut(s)	390, 431, 571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.