Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0011836

Physical Location & Seq

Genomic Coordinates Forward (+)

78309482 .. 78310650

Gene Structure 1169 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG567800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGTGAGAGCTCCGTTCTATGACAAAAGTGGAGTAAAGAAAGGGGCATGGAGTGCTGAAGAAGACGATAAGTTGAGAACTTATATCCAAAGCTATGGCCATTGGAACTGGCGTCAACTACCGAAATTTGCTGGTATACAAAGGTGCGGGAAAAGTTGCAGACTAAGATGGAAGAACTACCTTCAACCAGGTGTAAAACATGGAGATTACACTGAAGAAGAAGAGGCTTTAATCATCAAACTACATGAACAACTTGGGAATAAATGGTCGATGATTGCTGCAAAATTACCAGGAAGAACTGACAATGAAATAAAAAACCATTGGCACACCCACATGAAGAAGAAGAAGAAGCGCACAAAAGAACAGCAAAATCAAACATCATCTGGTCAAGTGGTACTTCTAAAAGATCATCAGCAGTCTTCTGATGATCACGAGTACTCATCAAGCAATTCAGACAATCAATTAGGGGCTCATGAAAGTGCTACTCATAATTGTAATCATGCTAATTCTCTACAACTACTTCATTATCCCCAAATTTTGGAGAGCTCCCCTGTAGTATCCCGTGAGTCAACATTTTCCAGTAGTACTAGTTCAGCAAAGTATTTCTCCTCCTCCTCCTCCTCCTCATCCTCAAGCTCCCCTAATAATCATGAAGCACGAGGTTCTACCGTGATCATGAACTATCTTGGTGATCAAGATATTGTCATAGTTTCATCATCAGAAACAATGATATTAGATCAAGAATACAGTGCTGGTGATTTTTGGACCAAACCGTTTCTACAGGACAATACATGTATCGAAAGTGACACTATATCATCTTCATCATCGTATTTATTGTCCTATGATGAAGGCATGGATTTGTTCTACCAGGTCATGCCAACACCGCAAGAGGGTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

299

Amino Acids

33.84

Weight (kDa)

6.22

Isoelectric Point (pI)

64.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	1.2e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 75	2.7e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	68 - 111	3.3e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 120	3.4e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28110 AT4G28110
fragaria_vesca	FvH4_6g44350 FvH4_6g44350 FvH4_6g44350
malus_domestica	MD00G1065700.v1.1 MD17G1086600.v1.1
prunus_persica	Prupe.3G227900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0161281
rosa_laevigata	RLG00000021275
rosa_multiflora	Rmu_ssc0000196.1_g000009
rosa_roxburghii	Rroxscaffold_2G00088950
rosa_rugosa	Rorug02G0487700 Rorug02G0487800
rosa_samantha	Rh2AG554500 Rh2BG567800 Rh2CG538300 Rh2DG577200
rosa_wichuraiana	Rw2G045880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	538
AccI	GTMKAC	1 cut(s)	136
AciI	CCGC	2 cut(s)	147, 884
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	2 cut(s)	125, 534
AcuI	CTGAAG	2 cut(s)	78, 234
AcyI	GRCGYC	1 cut(s)	112
AfaI	GTAC	3 cut(s)	396, 437, 586
AfiI	CCNNNNNNNGG	2 cut(s)	538, 890
AflIII	ACRYGT	1 cut(s)	791
AgsI	TTSAA	1 cut(s)	185
AhlI	ACTAGT	1 cut(s)	587
AjnI	CCWGG	3 cut(s)	187, 289, 867
AluBI	AGCT	4 cut(s)	11, 93, 546, 636
AluI	AGCT	4 cut(s)	11, 93, 546, 636
Alw21I	GWGCWC	2 cut(s)	13, 548
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	1 cut(s)	278
ApoI	RAATTY	2 cut(s)	125, 534
AspLEI	GCGC	1 cut(s)	354
AspS9I	GGNCC	1 cut(s)	765
AsuHPI	GGTGA	3 cut(s)	16, 701, 767
AvaII	GGWCC	1 cut(s)	765
BalI	TGGCCA	1 cut(s)	99
BanII	GRGCYC	3 cut(s)	13, 472, 548
BauI	CACGAG	2 cut(s)	431, 657
BbsI	GAAGAC	2 cut(s)	69, 411
Bbv12I	GWGCWC	2 cut(s)	13, 548
BbvI	GCAGC	1 cut(s)	265
BccI	CCATC	1 cut(s)	162
BciT130I	CCWGG	3 cut(s)	189, 291, 869
BciVI	GTATCC	1 cut(s)	568
BclI	TGATCA	3 cut(s)	427, 672, 691
BcuI	ACTAGT	1 cut(s)	587
BfaI	CTAG	1 cut(s)	588
BfmI	CTRYAG	2 cut(s)	552, 779
BfuI	GTATCC	1 cut(s)	568
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
BmcAI	AGTACT	2 cut(s)	437, 586
Bme1390I	CCNGG	3 cut(s)	189, 291, 869
Bme18I	GGWCC	1 cut(s)	765
BmgT120I	GGNCC	1 cut(s)	765
BmrFI	CCNGG	3 cut(s)	189, 291, 869
BpiI	GAAGAC	2 cut(s)	69, 411
BpuEI	CTTGAG	1 cut(s)	616
BsaHI	GRCGYC	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	2 cut(s)	538, 890
Bse1I	ACTGG	2 cut(s)	113, 579
BseBI	CCWGG	3 cut(s)	189, 291, 869
BseGI	GGATG	1 cut(s)	626
BseLI	CCNNNNNNNGG	2 cut(s)	538, 890
BseNI	ACTGG	2 cut(s)	113, 579
BseRI	GAGGAG	6 cut(s)	598, 601, 604, 607, 610, 613
BseXI	GCAGC	1 cut(s)	265
BshFI	GGCC	1 cut(s)	99
BsiHKAI	GWGCWC	2 cut(s)	13, 548
BslI	CCNNNNNNNGG	2 cut(s)	538, 890
BsnI	GGCC	1 cut(s)	99
Bsp1286I	GDGCHC	3 cut(s)	13, 472, 548
Bsp143I	GATC	5 cut(s)	406, 427, 672, 691, 736
BspACI	CCGC	2 cut(s)	147, 884
BspANI	GGCC	1 cut(s)	99
BspHI	TCATGA	3 cut(s)	472, 649, 675
BsrI	ACTGG	2 cut(s)	113, 579
BssMI	GATC	5 cut(s)	406, 427, 672, 691, 736
BssNAI	GTATAC	1 cut(s)	137
BssNI	GRCGYC	1 cut(s)	112
BssSI	CACGAG	2 cut(s)	431, 657
Bst1107I	GTATAC	1 cut(s)	137
Bst2BI	CACGAG	2 cut(s)	431, 657
Bst2UI	CCWGG	3 cut(s)	189, 291, 869
Bst4CI	ACNGT	3 cut(s)	670, 749, 774
Bst6I	CTCTTC	1 cut(s)	216
BstACI	GRCGYC	1 cut(s)	112
BstAPI	GCANNNNNTGC	1 cut(s)	53
BstDEI	CTNAG	1 cut(s)	164
BstF5I	GGATG	1 cut(s)	626
BstHHI	GCGC	1 cut(s)	354
BstKTI	GATC	5 cut(s)	409, 430, 675, 694, 739
BstMBI	GATC	5 cut(s)	406, 427, 672, 691, 736
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 883
BstNI	CCWGG	3 cut(s)	189, 291, 869
BstNSI	RCATGY	1 cut(s)	795
BstSCI	CCNGG	3 cut(s)	187, 289, 867
BstSFI	CTRYAG	2 cut(s)	552, 779
BstV1I	GCAGC	1 cut(s)	265
BstV2I	GAAGAC	2 cut(s)	69, 411
BstXI	CCANNNNNNTGG	1 cut(s)	95
BstZ17I	GTATAC	1 cut(s)	137
BsuI	GTATCC	1 cut(s)	568
BsuRI	GGCC	1 cut(s)	99
BtsCI	GGATG	1 cut(s)	626
BtsIMutI	CAGTG	2 cut(s)	210, 754
CciI	TCATGA	3 cut(s)	472, 649, 675
CfoI	GCGC	1 cut(s)	354
Cfr13I	GGNCC	1 cut(s)	765
CseI	GACGC	1 cut(s)	101
CsiI	ACCWGGT	2 cut(s)	187, 867
Csp6I	GTAC	3 cut(s)	395, 436, 585
CviJI	RGCY	7 cut(s)	11, 93, 99, 227, 470, 546, 636
CviKI_1	RGCY	7 cut(s)	11, 93, 99, 227, 470, 546, 636
CviQI	GTAC	3 cut(s)	395, 436, 585
DdeI	CTNAG	1 cut(s)	164
DpnI	GATC	5 cut(s)	408, 429, 674, 693, 738
DpnII	GATC	5 cut(s)	406, 427, 672, 691, 736
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Ecl136II	GAGCTC	2 cut(s)	11, 546
Eco24I	GRGCYC	3 cut(s)	13, 472, 548
Eco47I	GGWCC	1 cut(s)	765
Eco53kI	GAGCTC	2 cut(s)	11, 546
Eco57I	CTGAAG	2 cut(s)	78, 234
EcoICRI	GAGCTC	2 cut(s)	11, 546
EcoRII	CCWGG	3 cut(s)	187, 289, 867
EcoT38I	GRGCYC	3 cut(s)	13, 472, 548
FalI	AAGNNNNNCTT	2 cut(s)	381, 413
FauI	CCCGC	1 cut(s)	140
FbaI	TGATCA	3 cut(s)	427, 672, 691
FblI	GTMKAC	1 cut(s)	136
Fnu4HI	GCNGC	1 cut(s)	279
FokI	GGATG	1 cut(s)	613
FriOI	GRGCYC	3 cut(s)	13, 472, 548
Fsp4HI	GCNGC	1 cut(s)	279
FspBI	CTAG	1 cut(s)	588
GlaI	GCGC	1 cut(s)	353
GluI	GCNGC	1 cut(s)	279
HaeIII	GGCC	1 cut(s)	99
HgaI	GACGC	1 cut(s)	101
HhaI	GCGC	1 cut(s)	354
Hin1I	GRCGYC	1 cut(s)	112
Hin6I	GCGC	1 cut(s)	352
HinP1I	GCGC	1 cut(s)	352
HincII	GTYRAC	2 cut(s)	116, 570
HindII	GTYRAC	2 cut(s)	116, 570
HinfI	GANTC	1 cut(s)	566
HphI	GGTGA	3 cut(s)	16, 701, 767
Hpy166II	GTNNAC	3 cut(s)	116, 137, 570
Hpy188I	TCNGA	3 cut(s)	424, 454, 721
Hpy188III	TCNNGA	6 cut(s)	431, 473, 650, 676, 695, 740
Hpy8I	GTNNAC	3 cut(s)	116, 137, 570
HpyAV	CCTTC	2 cut(s)	191, 842
HpyCH4III	ACNGT	3 cut(s)	670, 749, 774
HpyCH4V	TGCA	2 cut(s)	159, 281
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 883
HpyF3I	CTNAG	1 cut(s)	164
Hsp92I	GRCGYC	1 cut(s)	112
HspAI	GCGC	1 cut(s)	352
Ksp22I	TGATCA	3 cut(s)	427, 672, 691
Kzo9I	GATC	5 cut(s)	406, 427, 672, 691, 736
LmnI	GCTCC	3 cut(s)	16, 551, 641
Lsp1109I	GCAGC	1 cut(s)	265
MabI	ACCWGGT	2 cut(s)	187, 867
MaeI	CTAG	1 cut(s)	588
MaeIII	GTNAC	1 cut(s)	803
MalI	GATC	5 cut(s)	408, 429, 674, 693, 738
MboI	GATC	5 cut(s)	406, 427, 672, 691, 736
MhlI	GDGCHC	3 cut(s)	13, 472, 548
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	7 cut(s)	125, 284, 448, 461, 490, 505, 534
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	1 cut(s)	575
Mox20I	TGGCCA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	1 cut(s)	230
MslI	CAYNNNNRTG	2 cut(s)	332, 477
Msp20I	TGGCCA	1 cut(s)	99
MspR9I	CCNGG	3 cut(s)	189, 291, 869
MvaI	CCWGG	3 cut(s)	189, 291, 869
MwoI	GCNNNNNNNGC	2 cut(s)	53, 883
NdeII	GATC	5 cut(s)	406, 427, 672, 691, 736
NmuCI	GTSAC	1 cut(s)	803
NspI	RCATGY	1 cut(s)	795
PagI	TCATGA	3 cut(s)	472, 649, 675
PciI	ACATGT	1 cut(s)	791
PflMI	CCANNNNNTGG	1 cut(s)	538
PkrI	GCNGC	1 cut(s)	280
PleI	GAGTC	1 cut(s)	574
PpsI	GAGTC	1 cut(s)	574
PscI	ACATGT	1 cut(s)	791
Psp124BI	GAGCTC	2 cut(s)	13, 548
Psp6I	CCWGG	3 cut(s)	187, 289, 867
PspGI	CCWGG	3 cut(s)	187, 289, 867
PspPI	GGNCC	1 cut(s)	765
PsrI	GAACNNNNNNTAC	2 cut(s)	574, 606
RsaI	GTAC	3 cut(s)	396, 437, 586
RsaNI	GTAC	3 cut(s)	395, 436, 585
RseI	CAYNNNNRTG	2 cut(s)	332, 477
SacI	GAGCTC	2 cut(s)	13, 548
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	5 cut(s)	406, 427, 672, 691, 736
Sau96I	GGNCC	1 cut(s)	765
ScaI	AGTACT	2 cut(s)	437, 586
SchI	GAGTC	1 cut(s)	575
ScrFI	CCNGG	3 cut(s)	189, 291, 869
SduI	GDGCHC	3 cut(s)	13, 472, 548
SetI	ASST	9 cut(s)	13, 95, 146, 183, 193, 548, 638, 664, 873
SexAI	ACCWGGT	2 cut(s)	187, 867
SfcI	CTRYAG	2 cut(s)	552, 779
SinI	GGWCC	1 cut(s)	765
SmiMI	CAYNNNNRTG	2 cut(s)	332, 477
SmlI	CTYRAG	1 cut(s)	631
SmoI	CTYRAG	1 cut(s)	631
SpeI	ACTAGT	1 cut(s)	587
Sse9I	AATT	7 cut(s)	125, 284, 448, 461, 490, 505, 534
SsiI	CCGC	2 cut(s)	147, 884
SspMI	CTAG	1 cut(s)	588
SstI	GAGCTC	2 cut(s)	13, 548
StyD4I	CCNGG	3 cut(s)	187, 289, 867
TaaI	ACNGT	3 cut(s)	670, 749, 774
TaqI	TCGA	2 cut(s)	269, 798
TasI	AATT	7 cut(s)	125, 284, 448, 461, 490, 505, 534
TatI	WGTACW	2 cut(s)	435, 584
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TscAI	CASTG	2 cut(s)	217, 754
TseFI	GTSAC	1 cut(s)	803
TseI	GCWGC	1 cut(s)	278
Tsp45I	GTSAC	1 cut(s)	803
TspRI	CASTG	2 cut(s)	217, 754
Van91I	CCANNNNNTGG	1 cut(s)	538
VpaK11BI	GGWCC	1 cut(s)	765
XapI	RAATTY	2 cut(s)	125, 534
XceI	RCATGY	1 cut(s)	795
XmiI	GTMKAC	1 cut(s)	136
XspI	CTAG	1 cut(s)	588
ZrmI	AGTACT	2 cut(s)	437, 586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.