Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0011836

Physical Location & Seq

Genomic Coordinates Forward (+)

61716050 .. 61718070

Gene Structure 2021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0487700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGAATTTCACATGGAAAAATGGGGACATTGTCTATGAATTTATAAGGATTTGGGTCAGCTTTATTTATTGCCAATTGATTTTGGATGTGAAACTCAAATTATGGTATCAGAGCATATTATCACATGTGTGCATGCCTCACGGCCACACAGATTCCACGTCACCCAATATTGTCCACGACATTGAGCAAGGGAAAGCTGGAATCACAACCACAGAGGAAGCCATTGATACTCTAATAAACTCTTACAAATCATCTGAAAGTTATCACCAACTTCAACGACATATAGCTGAACTACATAAGAAGGATTGCGAACCATTAGAAAGGAGAAGCCATGCTGGCTTTCTTACACAATGTTCCGTGCTTACAAGAAGATCCTCCGTGAACATGTATAGAGATCGAGGTTACTACTGGTTGCGCCTTATTATCTACATCGGCATAGCTCTAGGCTTAGGCATTATCTACCATGATCCTGGACATACTTATGGATCGATCCGGGCAAGAGGCTCTATGCTCATGTTTGTAGCTTCATTTCTAACTTTCATGGCCATTGGTGGGTTTCCTTCCTTTGTTGAAGACATGAAGGTATTTCAACGAGAGAGATTAAACGGGCATTATGGTGTTAGTGCATTTGTTTTTGGCAACACCTTTTCCTCGGTGCCTTTCTTGATGTTAATTTCACTGATTCCTGGAGCAACAGCATATTACGTTACTGGGCTTCACAGTGGATTTGAACACTTCCTCTACTTTGCTTGTGCACTATTTGCTTGCATGATGCTGGTTGAGAGCCTAATGATGATGGTTGCGAGCATCGTGCCGACTTTCCTCATGGGCATAATAGCTGGTGCTGGAATCCAAGGTGGAATGTATAAGAATGAATTTGCAGGAACAAGATATCCGAACGACAATCAGCTCGGAATGAGTTCCTCTGAATGGCTCAGTGGTGAACGCATTTTGAAAGATATATGGCAGCTGGAAACCGGTTACTCCAAATGGGTAGATCTGGCTATCTTGCTAGGAATGGTAGTTCTGTATCGAGTTTTGTTCTTCGTTATCATCAAGACCGCTGAGAAAATGAAGACTCTATATTACCTCATTTGTTCTGTCCGTGGCTCCCAAGCGAAGCAAGCAAGTACTGGTGAATCCCCCCTCTACTCCATTGCATGGCGACAGCGCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

392

Amino Acids

44.56

Weight (kDa)

8.54

Isoelectric Point (pI)

38.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane	PF01061	116 - 281	3.5e-30	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28110 AT4G28110
fragaria_vesca	FvH4_6g44350 FvH4_6g44350 FvH4_6g44350
malus_domestica	MD00G1065700.v1.1 MD17G1086600.v1.1
prunus_persica	Prupe.3G227900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0161281
rosa_laevigata	RLG00000021275
rosa_multiflora	Rmu_ssc0000196.1_g000009
rosa_roxburghii	Rroxscaffold_2G00088950
rosa_rugosa	Rorug02G0487700 Rorug02G0487800
rosa_samantha	Rh2AG554500 Rh2BG567800 Rh2CG538300 Rh2DG577200
rosa_wichuraiana	Rw2G045880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	44, 1177
AccB1I	GGYRCC	1 cut(s)	655
AccB7I	CCANNNNNTGG	1 cut(s)	1161
AciI	CCGC	1 cut(s)	1062
AclWI	GGATC	4 cut(s)	366, 461, 484, 493
AcoI	YGGCCR	2 cut(s)	142, 543
AcsI	RAATTY	3 cut(s)	4, 38, 875
AfaI	GTAC	1 cut(s)	1132
AfeI	AGCGCT	1 cut(s)	1172
AfiI	CCNNNNNNNGG	3 cut(s)	552, 930, 1161
AflIII	ACRYGT	2 cut(s)	124, 384
AgeI	ACCGGT	1 cut(s)	977
AgsI	TTSAA	5 cut(s)	275, 572, 590, 731, 955
AjiI	CACGTC	1 cut(s)	159
AjnI	CCWGG	2 cut(s)	469, 685
AleI	CACNNNNGTG	1 cut(s)	127
AloI	GAACNNNNNNTCC	4 cut(s)	877, 909, 1008, 1040
AluBI	AGCT	8 cut(s)	60, 197, 287, 440, 524, 839, 910, 970
AluI	AGCT	8 cut(s)	60, 197, 287, 440, 524, 839, 910, 970
Alw21I	GWGCWC	1 cut(s)	757
Alw44I	GTGCAC	1 cut(s)	753
AlwI	GGATC	4 cut(s)	366, 461, 484, 493
Aor51HI	AGCGCT	1 cut(s)	1172
AoxI	GGCC	2 cut(s)	142, 543
ApaLI	GTGCAC	1 cut(s)	753
ApeKI	GCWGC	1 cut(s)	967
ApoI	RAATTY	3 cut(s)	4, 38, 875
AsiGI	ACCGGT	1 cut(s)	977
Asp700I	GAANNNNTTC	1 cut(s)	919
AspLEI	GCGC	2 cut(s)	417, 1173
AsuC2I	CCSGG	1 cut(s)	494
AsuHPI	GGTGA	4 cut(s)	153, 257, 953, 1148
BaeGI	GKGCMC	1 cut(s)	757
BalI	TGGCCA	1 cut(s)	545
BanI	GGYRCC	1 cut(s)	655
BbsI	GAAGAC	2 cut(s)	579, 1082
Bbv12I	GWGCWC	1 cut(s)	757
BbvI	GCAGC	1 cut(s)	979
BccI	CCATC	1 cut(s)	790
BceAI	ACGGC	1 cut(s)	157
BcgI	CGANNNNNNTGC	2 cut(s)	793, 827
BciT130I	CCWGG	2 cut(s)	471, 687
BcnI	CCSGG	1 cut(s)	494
BfaI	CTAG	2 cut(s)	443, 1013
BfoI	RGCGCY	1 cut(s)	1174
BglI	GCCNNNNNGGC	1 cut(s)	336
BglII	AGATCT	1 cut(s)	997
BisI	GCNGC	1 cut(s)	968
BlsI	GCNGC	1 cut(s)	969
BmcAI	AGTACT	1 cut(s)	1132
Bme1390I	CCNGG	3 cut(s)	471, 494, 687
BmgBI	CACGTC	1 cut(s)	159
BmiI	GGNNCC	2 cut(s)	657, 1111
BmrFI	CCNGG	3 cut(s)	471, 494, 687
BmrI	ACTGGG	1 cut(s)	720
BmsI	GCATC	2 cut(s)	762, 816
BmuI	ACTGGG	1 cut(s)	720
BpiI	GAAGAC	2 cut(s)	579, 1082
BpmI	CTGGAG	1 cut(s)	708
Bpu10I	CCTNAGC	1 cut(s)	448
BpuMI	CCSGG	1 cut(s)	494
Bsa29I	ATCGAT	1 cut(s)	488
BsaJI	CCNNGG	3 cut(s)	651, 853, 1105
BsaWI	WCCGGW	1 cut(s)	977
Bsc4I	CCNNNNNNNGG	3 cut(s)	552, 930, 1161
Bse118I	RCCGGY	1 cut(s)	977
Bse1I	ACTGG	3 cut(s)	413, 715, 1138
Bse3DI	GCAATG	1 cut(s)	1155
BseBI	CCWGG	2 cut(s)	471, 687
BseCI	ATCGAT	1 cut(s)	488
BseDI	CCNNGG	3 cut(s)	651, 853, 1105
BseGI	GGATG	1 cut(s)	91
BseLI	CCNNNNNNNGG	3 cut(s)	552, 930, 1161
BseMI	GCAATG	1 cut(s)	1155
BseMII	CTCAG	2 cut(s)	949, 1056
BseNI	ACTGG	3 cut(s)	413, 715, 1138
BseSI	GKGCMC	1 cut(s)	757
BseXI	GCAGC	1 cut(s)	979
BshFI	GGCC	2 cut(s)	144, 545
BshNI	GGYRCC	1 cut(s)	655
BshTI	ACCGGT	1 cut(s)	977
BshVI	ATCGAT	1 cut(s)	488
BsiHKAI	GWGCWC	1 cut(s)	757
BsiSI	CCGG	2 cut(s)	493, 978
BslFI	GGGAC	1 cut(s)	38
BslI	CCNNNNNNNGG	3 cut(s)	552, 930, 1161
BsmFI	GGGAC	1 cut(s)	38
BsnI	GGCC	2 cut(s)	144, 545
Bsp1286I	GDGCHC	1 cut(s)	757
Bsp143I	GATC	6 cut(s)	371, 394, 466, 485, 489, 997
BspACI	CCGC	1 cut(s)	1062
BspANI	GGCC	2 cut(s)	144, 545
BspCNI	CTCAG	2 cut(s)	948, 1057
BspDI	ATCGAT	1 cut(s)	488
BspLI	GGNNCC	2 cut(s)	657, 1111
BspPI	GGATC	4 cut(s)	366, 461, 484, 493
BspT107I	GGYRCC	1 cut(s)	655
BsrDI	GCAATG	1 cut(s)	1155
BsrFI	RCCGGY	1 cut(s)	977
BsrI	ACTGG	3 cut(s)	413, 715, 1138
BssAI	RCCGGY	1 cut(s)	977
BssECI	CCNNGG	3 cut(s)	651, 853, 1105
BssMI	GATC	6 cut(s)	371, 394, 466, 485, 489, 997
BssT1I	CCWWGG	1 cut(s)	853
Bst2UI	CCWGG	2 cut(s)	471, 687
Bst4CI	ACNGT	1 cut(s)	722
BstAPI	GCANNNNNTGC	1 cut(s)	761
BstC8I	GCNNGC	5 cut(s)	134, 337, 766, 805, 1125
BstDEI	CTNAG	3 cut(s)	448, 935, 1065
BstDSI	CCRYGG	1 cut(s)	1105
BstF5I	GGATG	1 cut(s)	91
BstH2I	RGCGCY	1 cut(s)	1174
BstHHI	GCGC	2 cut(s)	417, 1173
BstKTI	GATC	6 cut(s)	374, 397, 469, 488, 492, 1000
BstMBI	GATC	6 cut(s)	371, 394, 466, 485, 489, 997
BstMWI	GCNNNNNNNGC	3 cut(s)	336, 761, 1124
BstNI	CCWGG	2 cut(s)	471, 687
BstNSI	RCATGY	3 cut(s)	128, 136, 388
BstSCI	CCNGG	3 cut(s)	469, 492, 685
BstSLI	GKGCMC	1 cut(s)	757
BstV1I	GCAGC	1 cut(s)	979
BstV2I	GAAGAC	2 cut(s)	579, 1082
BstX2I	RGATCY	2 cut(s)	371, 997
BstXI	CCANNNNNNTGG	1 cut(s)	470
BstYI	RGATCY	2 cut(s)	371, 997
Bsu15I	ATCGAT	1 cut(s)	488
BsuRI	GGCC	2 cut(s)	144, 545
BsuTUI	ATCGAT	1 cut(s)	488
BtgI	CCRYGG	1 cut(s)	1105
BtrI	CACGTC	1 cut(s)	159
BtsCI	GGATG	1 cut(s)	91
BtsIMutI	CAGTG	3 cut(s)	677, 727, 943
Cac8I	GCNNGC	5 cut(s)	134, 337, 766, 805, 1125
CfoI	GCGC	2 cut(s)	417, 1173
Cfr10I	RCCGGY	1 cut(s)	977
ClaI	ATCGAT	1 cut(s)	488
Csp6I	GTAC	1 cut(s)	1131
CspAI	ACCGGT	1 cut(s)	977
CviQI	GTAC	1 cut(s)	1131
DdeI	CTNAG	3 cut(s)	448, 935, 1065
DpnI	GATC	6 cut(s)	373, 396, 468, 487, 491, 999
DpnII	GATC	6 cut(s)	371, 394, 466, 485, 489, 997
EaeI	YGGCCR	2 cut(s)	142, 543
Eco130I	CCWWGG	1 cut(s)	853
Eco32I	GATATC	1 cut(s)	893
Eco47III	AGCGCT	1 cut(s)	1172
EcoRII	CCWGG	2 cut(s)	469, 685
EcoRV	GATATC	1 cut(s)	893
EcoT14I	CCWWGG	1 cut(s)	853
ErhI	CCWWGG	1 cut(s)	853
FaqI	GGGAC	1 cut(s)	38
Fnu4HI	GCNGC	1 cut(s)	968
FokI	GGATG	1 cut(s)	98
Fsp4HI	GCNGC	1 cut(s)	968
FspBI	CTAG	2 cut(s)	443, 1013
GlaI	GCGC	2 cut(s)	416, 1172
GluI	GCNGC	1 cut(s)	968
GsuI	CTGGAG	1 cut(s)	708
HaeII	RGCGCY	1 cut(s)	1174
HaeIII	GGCC	2 cut(s)	144, 545
HapII	CCGG	2 cut(s)	493, 978
HhaI	GCGC	2 cut(s)	417, 1173
Hin6I	GCGC	2 cut(s)	415, 1171
HinP1I	GCGC	2 cut(s)	415, 1171
HinfI	GANTC	6 cut(s)	152, 201, 682, 849, 1078, 1139
HpaII	CCGG	2 cut(s)	493, 978
HphI	GGTGA	4 cut(s)	153, 257, 953, 1148
Hpy166II	GTNNAC	4 cut(s)	175, 382, 755, 944
Hpy188I	TCNGA	5 cut(s)	111, 256, 897, 914, 928
Hpy188III	TCNNGA	2 cut(s)	664, 1057
Hpy8I	GTNNAC	4 cut(s)	175, 382, 755, 944
HpyAV	CCTTC	3 cut(s)	295, 570, 574
HpyCH4III	ACNGT	1 cut(s)	722
HpyCH4IV	ACGT	2 cut(s)	158, 705
HpyCH4V	TGCA	6 cut(s)	132, 626, 755, 768, 881, 1160
HpyF10VI	GCNNNNNNNGC	3 cut(s)	336, 761, 1124
HpyF3I	CTNAG	3 cut(s)	448, 935, 1065
HpySE526I	ACGT	2 cut(s)	158, 705
HspAI	GCGC	2 cut(s)	415, 1171
Kzo9I	GATC	6 cut(s)	371, 394, 466, 485, 489, 997
LmnI	GCTCC	2 cut(s)	689, 1115
Lsp1109I	GCAGC	1 cut(s)	979
LweI	GCATC	2 cut(s)	762, 816
MaeI	CTAG	2 cut(s)	443, 1013
MaeII	ACGT	2 cut(s)	158, 705
MaeIII	GTNAC	4 cut(s)	159, 401, 706, 980
MalI	GATC	6 cut(s)	373, 396, 468, 487, 491, 999
MboI	GATC	6 cut(s)	371, 394, 466, 485, 489, 997
MboII	GAAGA	4 cut(s)	381, 584, 1036, 1087
MfeI	CAATTG	1 cut(s)	74
MflI	RGATCY	2 cut(s)	371, 997
MhlI	GDGCHC	1 cut(s)	757
MlsI	TGGCCA	1 cut(s)	545
MluCI	AATT	6 cut(s)	4, 38, 74, 98, 672, 875
MluNI	TGGCCA	1 cut(s)	545
MlyI	GAGTC	1 cut(s)	1072
Mox20I	TGGCCA	1 cut(s)	545
MroXI	GAANNNNTTC	1 cut(s)	919
MscI	TGGCCA	1 cut(s)	545
MseI	TTAA	2 cut(s)	602, 671
MslI	CAYNNNNRTG	3 cut(s)	127, 480, 615
Msp20I	TGGCCA	1 cut(s)	545
MspA1I	CMGCKG	2 cut(s)	970, 1064
MspI	CCGG	2 cut(s)	493, 978
MspR9I	CCNGG	3 cut(s)	471, 494, 687
MunI	CAATTG	1 cut(s)	74
MvaI	CCWGG	2 cut(s)	471, 687
MwoI	GCNNNNNNNGC	3 cut(s)	336, 761, 1124
NciI	CCSGG	1 cut(s)	494
NdeII	GATC	6 cut(s)	371, 394, 466, 485, 489, 997
NlaIV	GGNNCC	2 cut(s)	657, 1111
NmuCI	GTSAC	1 cut(s)	159
NspI	RCATGY	3 cut(s)	128, 136, 388
OliI	CACNNNNGTG	1 cut(s)	127
PaeI	GCATGC	1 cut(s)	136
PciI	ACATGT	2 cut(s)	124, 384
PdmI	GAANNNNTTC	1 cut(s)	919
PfeI	GAWTC	5 cut(s)	152, 201, 682, 849, 1139
PflFI	GACNNNGTC	1 cut(s)	29
PflMI	CCANNNNNTGG	1 cut(s)	1161
PfoI	TCCNGGA	2 cut(s)	469, 685
PinAI	ACCGGT	1 cut(s)	977
PkrI	GCNGC	1 cut(s)	969
PleI	GAGTC	1 cut(s)	1072
PpsI	GAGTC	1 cut(s)	1072
PscI	ACATGT	2 cut(s)	124, 384
PsiI	TTATAA	2 cut(s)	44, 1177
Psp6I	CCWGG	2 cut(s)	469, 685
PspGI	CCWGG	2 cut(s)	469, 685
PspN4I	GGNNCC	2 cut(s)	657, 1111
PsuI	RGATCY	2 cut(s)	371, 997
PsyI	GACNNNGTC	1 cut(s)	29
PvuII	CAGCTG	1 cut(s)	970
RsaI	GTAC	1 cut(s)	1132
RsaNI	GTAC	1 cut(s)	1131
RseI	CAYNNNNRTG	3 cut(s)	127, 480, 615
SaqAI	TTAA	2 cut(s)	602, 671
SatI	GCNGC	1 cut(s)	968
Sau3AI	GATC	6 cut(s)	371, 394, 466, 485, 489, 997
ScaI	AGTACT	1 cut(s)	1132
SchI	GAGTC	1 cut(s)	1072
ScrFI	CCNGG	3 cut(s)	471, 494, 687
SduI	GDGCHC	1 cut(s)	757
SfaNI	GCATC	2 cut(s)	762, 816
SmiMI	CAYNNNNRTG	3 cut(s)	127, 480, 615
SphI	GCATGC	1 cut(s)	136
Sse9I	AATT	6 cut(s)	4, 38, 74, 98, 672, 875
SsiI	CCGC	1 cut(s)	1062
SspI	AATATT	1 cut(s)	169
SspMI	CTAG	2 cut(s)	443, 1013
StyD4I	CCNGG	3 cut(s)	469, 492, 685
StyI	CCWWGG	1 cut(s)	853
TaaI	ACNGT	1 cut(s)	722
TaiI	ACGT	2 cut(s)	161, 708
TaqI	TCGA	3 cut(s)	397, 488, 1033
TasI	AATT	6 cut(s)	4, 38, 74, 98, 672, 875
TatI	WGTACW	1 cut(s)	1130
TfiI	GAWTC	5 cut(s)	152, 201, 682, 849, 1139
Tru1I	TTAA	2 cut(s)	602, 671
Tru9I	TTAA	2 cut(s)	602, 671
TscAI	CASTG	3 cut(s)	684, 727, 943
TseFI	GTSAC	1 cut(s)	159
TseI	GCWGC	1 cut(s)	967
Tsp45I	GTSAC	1 cut(s)	159
TspDTI	ATGAA	7 cut(s)	17, 51, 516, 529, 593, 888, 1088
TspGWI	ACGGA	3 cut(s)	346, 367, 1094
TspRI	CASTG	3 cut(s)	684, 727, 943
Tth111I	GACNNNGTC	1 cut(s)	29
Van91I	CCANNNNNTGG	1 cut(s)	1161
VneI	GTGCAC	1 cut(s)	753
XapI	RAATTY	3 cut(s)	4, 38, 875
XceI	RCATGY	3 cut(s)	128, 136, 388
XmnI	GAANNNNTTC	1 cut(s)	919
XspI	CTAG	2 cut(s)	443, 1013
ZrmI	AGTACT	1 cut(s)	1132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.