Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009571

Physical Location & Seq

Genomic Coordinates Reverse (-)

13999625 .. 14002124

Gene Structure 2500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G28250.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGCAGCTTTTTCCAGTCATGTTAGCCACACTCTGCATTGTCCTGCAGCTTCTCATTGGCTCGTCAGCTTTGGCTACGACAAATCGCCACGTGTCAAACTCTCATTGGCTTCCCGCAGTAGCTACATGGTACGGAAGCCCCAACGGTGACGGCAGCGACGGAGGAGCGTGTGGTTACGGTACGTTGGTGGATGTGAAGCCGTTACATGCGAGGGTTGGAGCGGTGAATCCAATTCTCTTCAAAAATGGTGAAGGTTGCGGAGCTTGTTACAAGGTTCGATGCTTGGACAAGAGCATTTGTTCCCGGAGAGCCGTTACCGTCATAATTACCGATGAGTGTCCCGGCTGCTCTAAAACCAGCACTCACTTTGACCTCAGTGGTGCCGTCTTTGGCCGGTTAGCTATTGCCGGAGAGTCAGGGCCTCTCCGTAACCGTGGACTAATCCCAGTCATTTATCGCCGGACTGCATGCAAATATAGAGGGAAGAACATAGCATTCCATGTGAACGAAGGATCAACTGATTTTTGGCTATCTCTGCTGGTCGAGTTTGAAGATGGAGAAGGAGACATTGGCTCCATGCACATTCGCCAAGCAGGAGCCAGGGAATGGTTAGAGATGAAGCATGTATGGGGAGCCAACTGGTGCATCATTGGAGGGCCACTCAAGGGACCATTCTCCATCAAGCTCACCACTTTGTCTGCCGGTAAAACACTCTCTGCCACCGACGTTGTCCCTAGAAACTGGGCTCCCAAAGCAACTTACAGTTCCCGCCTCAACTTCTCCCCTGTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006949 GO:0008150 GO:0009506 GO:0009653 GO:0009987 GO:0016020 GO:0030054 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

264

Amino Acids

28.42

Weight (kDa)

9.04

Isoelectric Point (pI)

32.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	74 - 152	8.8e-16	Lytic transglycolase
Expansin_C	PF01357	158 - 192	2.3e-06	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28250 AT4G28250 AT4G28250 AT4G28250
fragaria_vesca	FvH4_6g26120 FvH4_6g26120 FvH4_6g26120
malus_domestica	MD09G1250100.v1.1 MD17G1242600.v1.1
prunus_persica	Prupe.3G155600_v2.0.a1
pyrus_communis	pycom09g16670 pycom17g24540
rosa_chinensis	RchiOBHm_Chr2g0126231
rosa_laevigata	RLG00000018894
rosa_multiflora	Rmu_ssc0000264.1_g000020
rosa_roxburghii	Rroxscaffold_2G00117360
rosa_rugosa	Rorug02G0261900
rosa_samantha	Rh2AG318900 Rh2BG327400 Rh2DG345700 Rh2DG347100
rosa_wichuraiana	Rw2G025850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	380
AccB7I	CCANNNNNTGG	1 cut(s)	606
AccBSI	CCGCTC	1 cut(s)	221
AciI	CCGC	4 cut(s)	114, 221, 258, 769
AclWI	GGATC	1 cut(s)	520
AcoI	YGGCCR	1 cut(s)	391
AcvI	CACGTG	1 cut(s)	91
AfaI	GTAC	2 cut(s)	131, 181
AfiI	CCNNNNNNNGG	2 cut(s)	606, 665
AflIII	ACRYGT	1 cut(s)	90
AgsI	TTSAA	2 cut(s)	241, 551
AjnI	CCWGG	1 cut(s)	599
AjuI	GAANNNNNNNTTGG	2 cut(s)	552, 584
AluBI	AGCT	7 cut(s)	7, 49, 68, 122, 263, 401, 685
AluI	AGCT	7 cut(s)	7, 49, 68, 122, 263, 401, 685
Alw26I	GTCTC	1 cut(s)	558
AlwI	GGATC	1 cut(s)	520
AoxI	GGCC	3 cut(s)	391, 419, 656
ApeKI	GCWGC	4 cut(s)	4, 46, 153, 345
AspS9I	GGNCC	3 cut(s)	419, 656, 668
AsuC2I	CCSGG	2 cut(s)	304, 342
AsuHPI	GGTGA	4 cut(s)	158, 235, 260, 679
AvaII	GGWCC	1 cut(s)	668
BaeI	ACNNNNGTAYC	2 cut(s)	171, 204
BanI	GGYRCC	1 cut(s)	380
BanII	GRGCYC	1 cut(s)	748
BbrPI	CACGTG	1 cut(s)	91
BbvI	GCAGC	4 cut(s)	16, 58, 165, 332
BccI	CCATC	2 cut(s)	548, 686
BceAI	ACGGC	4 cut(s)	166, 184, 296, 368
BciT130I	CCWGG	1 cut(s)	601
BcnI	CCSGG	2 cut(s)	304, 342
BcoDI	GTCTC	1 cut(s)	558
BfaI	CTAG	1 cut(s)	735
BfmI	CTRYAG	1 cut(s)	44
BisI	GCNGC	4 cut(s)	5, 47, 154, 346
BlsI	GCNGC	4 cut(s)	6, 48, 155, 347
Bme1390I	CCNGG	3 cut(s)	304, 342, 601
Bme18I	GGWCC	1 cut(s)	668
BmgT120I	GGNCC	3 cut(s)	419, 656, 668
BmiI	GGNNCC	6 cut(s)	382, 574, 598, 634, 669, 747
BmrFI	CCNGG	3 cut(s)	304, 342, 601
BmrI	ACTGGG	2 cut(s)	440, 751
BmsI	GCATC	2 cut(s)	269, 654
BmuI	ACTGGG	2 cut(s)	440, 751
BplI	GAGNNNNNCTC	2 cut(s)	645, 677
BpuEI	CTTGAG	1 cut(s)	647
BpuMI	CCSGG	2 cut(s)	304, 342
BsaAI	YACGTR	1 cut(s)	91
BsaJI	CCNNGG	2 cut(s)	433, 600
BsaXI	ACNNNNNCTCC	2 cut(s)	557, 587
Bsc4I	CCNNNNNNNGG	2 cut(s)	606, 665
Bse118I	RCCGGY	2 cut(s)	393, 701
Bse1I	ACTGG	4 cut(s)	14, 446, 644, 746
BseBI	CCWGG	1 cut(s)	601
BseDI	CCNNGG	2 cut(s)	433, 600
BseGI	GGATG	1 cut(s)	196
BseLI	CCNNNNNNNGG	2 cut(s)	606, 665
BseMII	CTCAG	1 cut(s)	388
BseNI	ACTGG	4 cut(s)	14, 446, 644, 746
BseRI	GAGGAG	1 cut(s)	177
BseXI	GCAGC	4 cut(s)	16, 58, 165, 332
BshFI	GGCC	3 cut(s)	393, 421, 658
BshNI	GGYRCC	1 cut(s)	380
BsiSI	CCGG	6 cut(s)	304, 342, 394, 408, 460, 702
BslFI	GGGAC	3 cut(s)	324, 681, 716
BslI	CCNNNNNNNGG	2 cut(s)	606, 665
BsmAI	GTCTC	1 cut(s)	558
BsmFI	GGGAC	3 cut(s)	324, 681, 716
BsmI	GAATGC	1 cut(s)	494
BsnI	GGCC	3 cut(s)	393, 421, 658
Bsp1286I	GDGCHC	1 cut(s)	748
Bsp143I	GATC	1 cut(s)	512
BspACI	CCGC	4 cut(s)	114, 221, 258, 769
BspANI	GGCC	3 cut(s)	393, 421, 658
BspCNI	CTCAG	1 cut(s)	387
BspLI	GGNNCC	6 cut(s)	382, 574, 598, 634, 669, 747
BspMAI	CTGCAG	1 cut(s)	48
BspPI	GGATC	1 cut(s)	520
BspT107I	GGYRCC	1 cut(s)	380
BsrBI	CCGCTC	1 cut(s)	221
BsrFI	RCCGGY	2 cut(s)	393, 701
BsrI	ACTGG	4 cut(s)	14, 446, 644, 746
BssAI	RCCGGY	2 cut(s)	393, 701
BssECI	CCNNGG	2 cut(s)	433, 600
BssMI	GATC	1 cut(s)	512
Bst2UI	CCWGG	1 cut(s)	601
Bst4CI	ACNGT	5 cut(s)	146, 179, 319, 434, 764
Bst6I	CTCTTC	1 cut(s)	242
BstBAI	YACGTR	1 cut(s)	91
BstC8I	GCNNGC	1 cut(s)	469
BstDEI	CTNAG	1 cut(s)	374
BstDSI	CCRYGG	1 cut(s)	433
BstF5I	GGATG	1 cut(s)	196
BstKTI	GATC	1 cut(s)	515
BstMAI	GTCTC	1 cut(s)	558
BstMBI	GATC	1 cut(s)	512
BstMWI	GCNNNNNNNGC	2 cut(s)	535, 752
BstNI	CCWGG	1 cut(s)	601
BstNSI	RCATGY	3 cut(s)	209, 471, 626
BstSCI	CCNGG	3 cut(s)	302, 340, 599
BstSFI	CTRYAG	1 cut(s)	44
BstV1I	GCAGC	4 cut(s)	16, 58, 165, 332
BsuRI	GGCC	3 cut(s)	393, 421, 658
BtgI	CCRYGG	1 cut(s)	433
BtsCI	GGATG	1 cut(s)	196
BtsIMutI	CAGTG	1 cut(s)	382
Cac8I	GCNNGC	1 cut(s)	469
Cfr10I	RCCGGY	2 cut(s)	393, 701
Cfr13I	GGNCC	3 cut(s)	419, 656, 668
Csp6I	GTAC	2 cut(s)	130, 180
CspCI	CAANNNNNGTGG	2 cut(s)	709, 744
CviAII	CATG	7 cut(s)	19, 126, 206, 468, 500, 577, 623
CviQI	GTAC	2 cut(s)	130, 180
DdeI	CTNAG	1 cut(s)	374
DpnI	GATC	1 cut(s)	514
DpnII	GATC	1 cut(s)	512
EaeI	YGGCCR	1 cut(s)	391
Eam1104I	CTCTTC	1 cut(s)	242
EarI	CTCTTC	1 cut(s)	242
Eco24I	GRGCYC	1 cut(s)	748
Eco47I	GGWCC	1 cut(s)	668
Eco72I	CACGTG	1 cut(s)	91
EcoO109I	RGGNCCY	1 cut(s)	419
EcoRII	CCWGG	1 cut(s)	599
EcoT38I	GRGCYC	1 cut(s)	748
FaeI	CATG	7 cut(s)	22, 129, 209, 471, 503, 580, 626
FaqI	GGGAC	3 cut(s)	324, 681, 716
FatI	CATG	7 cut(s)	18, 125, 205, 467, 499, 576, 622
FauI	CCCGC	2 cut(s)	121, 776
Fnu4HI	GCNGC	4 cut(s)	5, 47, 154, 346
FokI	GGATG	1 cut(s)	203
FriOI	GRGCYC	1 cut(s)	748
Fsp4HI	GCNGC	4 cut(s)	5, 47, 154, 346
FspBI	CTAG	1 cut(s)	735
GluI	GCNGC	4 cut(s)	5, 47, 154, 346
HaeIII	GGCC	3 cut(s)	393, 421, 658
HapII	CCGG	6 cut(s)	304, 342, 394, 408, 460, 702
Hin1II	CATG	7 cut(s)	22, 129, 209, 471, 503, 580, 626
HinfI	GANTC	2 cut(s)	226, 413
HpaII	CCGG	6 cut(s)	304, 342, 394, 408, 460, 702
HphI	GGTGA	4 cut(s)	158, 235, 260, 679
Hpy166II	GTNNAC	2 cut(s)	437, 505
Hpy8I	GTNNAC	2 cut(s)	437, 505
Hpy99I	CGWCG	2 cut(s)	161, 728
HpyAV	CCTTC	3 cut(s)	245, 503, 554
HpyCH4III	ACNGT	5 cut(s)	146, 179, 319, 434, 764
HpyCH4IV	ACGT	3 cut(s)	90, 182, 726
HpyCH4V	TGCA	7 cut(s)	4, 36, 46, 467, 471, 580, 645
HpyF10VI	GCNNNNNNNGC	2 cut(s)	535, 752
HpyF3I	CTNAG	1 cut(s)	374
HpySE526I	ACGT	3 cut(s)	90, 182, 726
Hsp92II	CATG	7 cut(s)	22, 129, 209, 471, 503, 580, 626
Kzo9I	GATC	1 cut(s)	512
LmnI	GCTCC	7 cut(s)	164, 218, 260, 578, 596, 632, 751
Lsp1109I	GCAGC	4 cut(s)	16, 58, 165, 332
LweI	GCATC	2 cut(s)	269, 654
MaeI	CTAG	1 cut(s)	735
MaeII	ACGT	3 cut(s)	90, 182, 726
MaeIII	GTNAC	6 cut(s)	146, 173, 201, 266, 313, 428
MalI	GATC	1 cut(s)	514
MbiI	CCGCTC	1 cut(s)	221
MboI	GATC	1 cut(s)	512
MboII	GAAGA	3 cut(s)	229, 496, 563
MhlI	GDGCHC	1 cut(s)	748
MluCI	AATT	2 cut(s)	231, 324
MlyI	GAGTC	1 cut(s)	422
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	7 cut(s)	155, 204, 383, 432, 473, 647, 782
MspI	CCGG	6 cut(s)	304, 342, 394, 408, 460, 702
MspR9I	CCNGG	3 cut(s)	304, 342, 601
Mva1269I	GAATGC	1 cut(s)	494
MvaI	CCWGG	1 cut(s)	601
MwoI	GCNNNNNNNGC	2 cut(s)	535, 752
NciI	CCSGG	2 cut(s)	304, 342
NdeII	GATC	1 cut(s)	512
NlaIII	CATG	7 cut(s)	22, 129, 209, 471, 503, 580, 626
NlaIV	GGNNCC	6 cut(s)	382, 574, 598, 634, 669, 747
NmuCI	GTSAC	1 cut(s)	146
NspI	RCATGY	3 cut(s)	209, 471, 626
PaeI	GCATGC	1 cut(s)	471
PctI	GAATGC	1 cut(s)	494
PfeI	GAWTC	1 cut(s)	226
PflFI	GACNNNGTC	1 cut(s)	728
PflMI	CCANNNNNTGG	1 cut(s)	606
PfoI	TCCNGGA	1 cut(s)	302
PkrI	GCNGC	4 cut(s)	6, 48, 155, 347
PleI	GAGTC	1 cut(s)	421
PmaCI	CACGTG	1 cut(s)	91
PmlI	CACGTG	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	421
Ppu21I	YACGTR	1 cut(s)	91
Psp6I	CCWGG	1 cut(s)	599
PspCI	CACGTG	1 cut(s)	91
PspGI	CCWGG	1 cut(s)	599
PspN4I	GGNNCC	6 cut(s)	382, 574, 598, 634, 669, 747
PspPI	GGNCC	3 cut(s)	419, 656, 668
PstI	CTGCAG	1 cut(s)	48
PsyI	GACNNNGTC	1 cut(s)	728
RsaI	GTAC	2 cut(s)	131, 181
RsaNI	GTAC	2 cut(s)	130, 180
SatI	GCNGC	4 cut(s)	5, 47, 154, 346
Sau3AI	GATC	1 cut(s)	512
Sau96I	GGNCC	3 cut(s)	419, 656, 668
SchI	GAGTC	1 cut(s)	422
ScrFI	CCNGG	3 cut(s)	304, 342, 601
SduI	GDGCHC	1 cut(s)	748
SfaNI	GCATC	2 cut(s)	269, 654
SfcI	CTRYAG	1 cut(s)	44
SinI	GGWCC	1 cut(s)	668
SmlI	CTYRAG	1 cut(s)	662
SmoI	CTYRAG	1 cut(s)	662
SphI	GCATGC	1 cut(s)	471
Sse9I	AATT	2 cut(s)	231, 324
SsiI	CCGC	4 cut(s)	114, 221, 258, 769
SspMI	CTAG	1 cut(s)	735
StyD4I	CCNGG	3 cut(s)	302, 340, 599
TaaI	ACNGT	5 cut(s)	146, 179, 319, 434, 764
TaiI	ACGT	3 cut(s)	93, 185, 729
TaqI	TCGA	2 cut(s)	277, 543
TasI	AATT	2 cut(s)	231, 324
TfiI	GAWTC	1 cut(s)	226
TscAI	CASTG	1 cut(s)	382
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	4 cut(s)	4, 46, 153, 345
Tsp45I	GTSAC	1 cut(s)	146
TspDTI	ATGAA	1 cut(s)	632
TspGWI	ACGGA	3 cut(s)	147, 174, 416
TspRI	CASTG	1 cut(s)	382
Tth111I	GACNNNGTC	1 cut(s)	728
Van91I	CCANNNNNTGG	1 cut(s)	606
VpaK11BI	GGWCC	1 cut(s)	668
XceI	RCATGY	3 cut(s)	209, 471, 626
XspI	CTAG	1 cut(s)	735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.