Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009571

Physical Location & Seq

Genomic Coordinates Reverse (-)

19978858 .. 19980694

Gene Structure 1837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g26120.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGCAGCTCCTCTTCCTTCCGCGGCGTGGATTTGGGCTTTTCTTAATGCTAGCAGCAGCAATAATGGTTTCAGCAGCTCATCAAAGCAGCAGCAGCTCATCATCATCGCATTGGCTTCCCGCCACAGCCACCTGGTATGGGAGCCCCGAAGGTGACGGCAGTGACGGCGGCGCATGTGGGTACGGTTCCTTAGTCGACGTGAAGCCTTTGAGAGCGAGAGTGGGCGCTGTCAGCCCGGTGCTGTTCAACAACGGAGAGGGTTGCGGCGCGTGTTACAAAGTCAAGTGTTTGGACAAATCCATTTGCTCCAGGCGAGCCGTCACCATAATCGTCACCGACGAGTGCCCTGGTGGCTACTGCTCAGGTGGGCGGACCCACTTCGACCTCAGTGGCGCAGCCTTTGGCCGCATGGCTATTGCCGGAGAGCATGCCCTCCTCAGAAACCGAGGCGAACTCTCCGTTCTATACCGACGAACACCATGTAAATATCCCGGGAAGCAGGTGGCCTTCCATGTGAATGAAGGTTCAACCAACTATTGGCTCTCACTCCTGGTTGAGTTTGAGGATGGAGATGGAGACGTCGGAGCAATGCATATAAGACAAGCAAGCTCTAGTGAGTGGGTAGCGATGAGGCATGTCTGGGGAGCAAGTTGGTGCATCGAAGGAGGAGGACCTTTGAGAGGGCCATTCTCAGTCAAGATAACCACACTATCAACTGCAAGAAGCCTCACCGCCCGGGATGTCATTCCAAGCAACTGGTCTCCCAAAGCCACTTACACCTCTCGCCTCAATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006949 GO:0008150 GO:0009506 GO:0009653 GO:0009987 GO:0016020 GO:0030054 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

266

Amino Acids

28.41

Weight (kDa)

8.88

Isoelectric Point (pI)

43.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	76 - 150	1.3e-15	Lytic transglycolase
Expansin_C	PF01357	168 - 250	1.6e-24	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28250 AT4G28250 AT4G28250 AT4G28250
fragaria_vesca	FvH4_6g26120 FvH4_6g26120 FvH4_6g26120
malus_domestica	MD09G1250100.v1.1 MD17G1242600.v1.1
prunus_persica	Prupe.3G155600_v2.0.a1
pyrus_communis	pycom09g16670 pycom17g24540
rosa_chinensis	RchiOBHm_Chr2g0126231
rosa_laevigata	RLG00000018894
rosa_multiflora	Rmu_ssc0000264.1_g000020
rosa_roxburghii	Rroxscaffold_2G00117360
rosa_rugosa	Rorug02G0261900
rosa_samantha	Rh2AG318900 Rh2BG327400 Rh2DG345700 Rh2DG347100
rosa_wichuraiana	Rw2G025850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	490
AatII	GACGTC	1 cut(s)	582
Acc36I	ACCTGC	1 cut(s)	490
AccB7I	CCANNNNNTGG	1 cut(s)	537
AccI	GTMKAC	1 cut(s)	195
AccII	CGCG	2 cut(s)	22, 269
AciI	CCGC	8 cut(s)	20, 22, 120, 168, 264, 370, 406, 732
AcoI	YGGCCR	1 cut(s)	403
AcyI	GRCGYC	1 cut(s)	579
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	4 cut(s)	26, 138, 537, 680
AgsI	TTSAA	2 cut(s)	247, 528
AjiI	CACGTC	1 cut(s)	199
AjnI	CCWGG	4 cut(s)	131, 308, 346, 549
AluBI	AGCT	4 cut(s)	7, 77, 96, 609
AluI	AGCT	4 cut(s)	7, 77, 96, 609
Alw26I	GTCTC	2 cut(s)	570, 765
Ama87I	CYCGRG	2 cut(s)	491, 735
AoxI	GGCC	3 cut(s)	403, 504, 683
ApeKI	GCWGC	8 cut(s)	4, 53, 56, 74, 87, 90, 93, 395
AspLEI	GCGC	4 cut(s)	173, 227, 269, 395
AspS9I	GGNCC	3 cut(s)	372, 671, 683
AsuC2I	CCSGG	5 cut(s)	236, 492, 493, 736, 737
AsuHPI	GGTGA	4 cut(s)	164, 313, 325, 721
AsuNHI	GCTAGC	1 cut(s)	49
AvaI	CYCGRG	2 cut(s)	491, 735
AvaII	GGWCC	2 cut(s)	372, 671
BaeGI	GKGCMC	1 cut(s)	347
BanII	GRGCYC	1 cut(s)	146
BbvI	GCAGC	8 cut(s)	16, 65, 68, 86, 99, 102, 105, 407
BccI	CCATC	2 cut(s)	560, 566
BceAI	ACGGC	3 cut(s)	172, 181, 302
BciT130I	CCWGG	4 cut(s)	133, 310, 348, 551
BcnI	CCSGG	5 cut(s)	236, 492, 493, 736, 737
BcoDI	GTCTC	2 cut(s)	570, 765
BfaI	CTAG	2 cut(s)	50, 612
BfoI	RGCGCY	1 cut(s)	228
BfuAI	ACCTGC	1 cut(s)	490
BglI	GCCNNNNNGGC	1 cut(s)	351
Bme1390I	CCNGG	9 cut(s)	133, 236, 310, 348, 492, 493, 551, 736, 737
Bme18I	GGWCC	2 cut(s)	372, 671
BmeT110I	CYCGRG	2 cut(s)	491, 735
BmgBI	CACGTC	1 cut(s)	199
BmgT120I	GGNCC	3 cut(s)	372, 671, 683
BmiI	GGNNCC	3 cut(s)	143, 187, 374
BmrFI	CCNGG	9 cut(s)	133, 236, 310, 348, 492, 493, 551, 736, 737
BmsI	GCATC	1 cut(s)	666
BmtI	GCTAGC	1 cut(s)	53
BplI	GAGNNNNNCTC	2 cut(s)	438, 470
BpmI	CTGGAG	1 cut(s)	292
Bpu10I	CCTNAGC	1 cut(s)	361
BpuMI	CCSGG	5 cut(s)	236, 492, 493, 736, 737
BsaHI	GRCGYC	1 cut(s)	579
BsaI	GGTCTC	1 cut(s)	765
BsaJI	CCNNGG	5 cut(s)	20, 346, 445, 491, 735
Bsc4I	CCNNNNNNNGG	4 cut(s)	26, 138, 537, 680
Bse1I	ACTGG	1 cut(s)	761
Bse3DI	GCAATG	1 cut(s)	594
BseBI	CCWGG	4 cut(s)	133, 310, 348, 551
BseDI	CCNNGG	5 cut(s)	20, 346, 445, 491, 735
BseGI	GGATG	2 cut(s)	571, 745
BseLI	CCNNNNNNNGG	4 cut(s)	26, 138, 537, 680
BseMI	GCAATG	1 cut(s)	594
BseMII	CTCAG	4 cut(s)	375, 400, 451, 705
BseNI	ACTGG	1 cut(s)	761
BseRI	GAGGAG	2 cut(s)	425, 681
BseSI	GKGCMC	1 cut(s)	347
BseXI	GCAGC	8 cut(s)	16, 65, 68, 86, 99, 102, 105, 407
Bsh1236I	CGCG	2 cut(s)	22, 269
BshFI	GGCC	3 cut(s)	405, 506, 685
BsiHKCI	CYCGRG	2 cut(s)	491, 735
BsiSI	CCGG	4 cut(s)	236, 420, 492, 736
BslI	CCNNNNNNNGG	4 cut(s)	26, 138, 537, 680
BsmAI	GTCTC	2 cut(s)	570, 765
BsmBI	CGTCTC	1 cut(s)	570
BsnI	GGCC	3 cut(s)	405, 506, 685
Bso31I	GGTCTC	1 cut(s)	765
BsoBI	CYCGRG	2 cut(s)	491, 735
Bsp1286I	GDGCHC	2 cut(s)	146, 347
BspACI	CCGC	8 cut(s)	20, 22, 120, 168, 264, 370, 406, 732
BspANI	GGCC	3 cut(s)	405, 506, 685
BspCNI	CTCAG	4 cut(s)	374, 399, 450, 704
BspFNI	CGCG	2 cut(s)	22, 269
BspLI	GGNNCC	3 cut(s)	143, 187, 374
BspMI	ACCTGC	1 cut(s)	490
BspOI	GCTAGC	1 cut(s)	53
BspTNI	GGTCTC	1 cut(s)	765
BsrDI	GCAATG	1 cut(s)	594
BsrI	ACTGG	1 cut(s)	761
BssECI	CCNNGG	5 cut(s)	20, 346, 445, 491, 735
BssNI	GRCGYC	1 cut(s)	579
Bst2UI	CCWGG	4 cut(s)	133, 310, 348, 551
Bst4CI	ACNGT	1 cut(s)	185
Bst6I	CTCTTC	1 cut(s)	17
BstACI	GRCGYC	1 cut(s)	579
BstC8I	GCNNGC	4 cut(s)	51, 315, 429, 607
BstDEI	CTNAG	5 cut(s)	190, 361, 386, 437, 691
BstDSI	CCRYGG	1 cut(s)	20
BstENI	CCTNNNNNAGG	1 cut(s)	678
BstF5I	GGATG	2 cut(s)	571, 745
BstFNI	CGCG	2 cut(s)	22, 269
BstH2I	RGCGCY	1 cut(s)	228
BstHHI	GCGC	4 cut(s)	173, 227, 269, 395
BstMAI	GTCTC	2 cut(s)	570, 765
BstMWI	GCNNNNNNNGC	4 cut(s)	93, 165, 231, 351
BstNI	CCWGG	4 cut(s)	133, 310, 348, 551
BstNSI	RCATGY	3 cut(s)	177, 431, 638
BstSCI	CCNGG	9 cut(s)	131, 234, 308, 346, 490, 491, 549, 734, 735
BstSLI	GKGCMC	1 cut(s)	347
BstUI	CGCG	2 cut(s)	22, 269
BstV1I	GCAGC	8 cut(s)	16, 65, 68, 86, 99, 102, 105, 407
BstXI	CCANNNNNNTGG	1 cut(s)	756
BsuRI	GGCC	3 cut(s)	405, 506, 685
BtgI	CCRYGG	1 cut(s)	20
BtgZI	GCGATG	2 cut(s)	90, 641
BtrI	CACGTC	1 cut(s)	199
BtsCI	GGATG	2 cut(s)	571, 745
BtsI	GCAGTG	1 cut(s)	166
BtsIMutI	CAGTG	2 cut(s)	166, 394
BveI	ACCTGC	1 cut(s)	490
Cac8I	GCNNGC	4 cut(s)	51, 315, 429, 607
CfoI	GCGC	4 cut(s)	173, 227, 269, 395
Cfr13I	GGNCC	3 cut(s)	372, 671, 683
Cfr42I	CCGCGG	1 cut(s)	23
Cfr9I	CCCGGG	2 cut(s)	491, 735
CsiI	ACCWGGT	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	6 cut(s)	174, 409, 428, 480, 512, 635
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	5 cut(s)	190, 361, 386, 437, 691
EaeI	YGGCCR	1 cut(s)	403
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
EciI	GGCGGA	1 cut(s)	385
Eco24I	GRGCYC	1 cut(s)	146
Eco31I	GGTCTC	1 cut(s)	765
Eco47I	GGWCC	2 cut(s)	372, 671
Eco88I	CYCGRG	2 cut(s)	491, 735
EcoNI	CCTNNNNNAGG	1 cut(s)	678
EcoO109I	RGGNCCY	1 cut(s)	671
EcoRII	CCWGG	4 cut(s)	131, 308, 346, 549
EcoT22I	ATGCAT	1 cut(s)	594
EcoT38I	GRGCYC	1 cut(s)	146
Esp3I	CGTCTC	1 cut(s)	570
FaeI	CATG	6 cut(s)	177, 412, 431, 483, 515, 638
FatI	CATG	6 cut(s)	173, 408, 427, 479, 511, 634
FauI	CCCGC	1 cut(s)	127
FblI	GTMKAC	1 cut(s)	195
FokI	GGATG	2 cut(s)	578, 752
FriOI	GRGCYC	1 cut(s)	146
FspBI	CTAG	2 cut(s)	50, 612
GlaI	GCGC	4 cut(s)	172, 226, 268, 394
GsuI	CTGGAG	1 cut(s)	292
HaeII	RGCGCY	1 cut(s)	228
HaeIII	GGCC	3 cut(s)	405, 506, 685
HapII	CCGG	4 cut(s)	236, 420, 492, 736
HhaI	GCGC	4 cut(s)	173, 227, 269, 395
Hin1I	GRCGYC	1 cut(s)	579
Hin1II	CATG	6 cut(s)	177, 412, 431, 483, 515, 638
Hin6I	GCGC	4 cut(s)	171, 225, 267, 393
HinP1I	GCGC	4 cut(s)	171, 225, 267, 393
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HpaII	CCGG	4 cut(s)	236, 420, 492, 736
HphI	GGTGA	4 cut(s)	164, 313, 325, 721
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	2 cut(s)	440, 584
Hpy188III	TCNNGA	1 cut(s)	697
Hpy8I	GTNNAC	1 cut(s)	196
Hpy99I	CGWCG	4 cut(s)	200, 341, 474, 584
HpyAV	CCTTC	5 cut(s)	26, 143, 515, 517, 656
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4IV	ACGT	2 cut(s)	198, 579
HpyCH4V	TGCA	4 cut(s)	4, 592, 657, 719
HpyF10VI	GCNNNNNNNGC	4 cut(s)	93, 165, 231, 351
HpyF3I	CTNAG	5 cut(s)	190, 361, 386, 437, 691
HpySE526I	ACGT	2 cut(s)	198, 579
Hsp92I	GRCGYC	1 cut(s)	579
Hsp92II	CATG	6 cut(s)	177, 412, 431, 483, 515, 638
HspAI	GCGC	4 cut(s)	171, 225, 267, 393
KspI	CCGCGG	1 cut(s)	23
LmnI	GCTCC	5 cut(s)	12, 141, 311, 584, 644
Lsp1109I	GCAGC	8 cut(s)	16, 65, 68, 86, 99, 102, 105, 407
LweI	GCATC	1 cut(s)	666
MabI	ACCWGGT	1 cut(s)	131
MaeI	CTAG	2 cut(s)	50, 612
MaeII	ACGT	2 cut(s)	198, 579
MaeIII	GTNAC	5 cut(s)	152, 161, 272, 319, 331
MboII	GAAGA	1 cut(s)	4
MhlI	GDGCHC	2 cut(s)	146, 347
MluCI	AATT	1 cut(s)	790
MmeI	TCCRAC	1 cut(s)	562
Mph1103I	ATGCAT	1 cut(s)	594
MseI	TTAA	1 cut(s)	44
MslI	CAYNNNNRTG	1 cut(s)	516
MspA1I	CMGCKG	1 cut(s)	22
MspI	CCGG	4 cut(s)	236, 420, 492, 736
MspR9I	CCNGG	9 cut(s)	133, 236, 310, 348, 492, 493, 551, 736, 737
MvaI	CCWGG	4 cut(s)	133, 310, 348, 551
MvnI	CGCG	2 cut(s)	22, 269
MwoI	GCNNNNNNNGC	4 cut(s)	93, 165, 231, 351
NciI	CCSGG	5 cut(s)	236, 492, 493, 736, 737
NheI	GCTAGC	1 cut(s)	49
NlaIII	CATG	6 cut(s)	177, 412, 431, 483, 515, 638
NlaIV	GGNNCC	3 cut(s)	143, 187, 374
NmuCI	GTSAC	4 cut(s)	152, 161, 319, 331
NsiI	ATGCAT	1 cut(s)	594
NspI	RCATGY	3 cut(s)	177, 431, 638
PaeI	GCATGC	1 cut(s)	431
PaqCI	CACCTGC	1 cut(s)	490
PcsI	WCGNNNNNNNCGW	1 cut(s)	336
PflMI	CCANNNNNTGG	1 cut(s)	537
PpuMI	RGGWCCY	1 cut(s)	671
Psp5II	RGGWCCY	1 cut(s)	671
Psp6I	CCWGG	4 cut(s)	131, 308, 346, 549
PspGI	CCWGG	4 cut(s)	131, 308, 346, 549
PspN4I	GGNNCC	3 cut(s)	143, 187, 374
PspPI	GGNCC	3 cut(s)	372, 671, 683
PspPPI	RGGWCCY	1 cut(s)	671
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
RseI	CAYNNNNRTG	1 cut(s)	516
SacII	CCGCGG	1 cut(s)	23
SalI	GTCGAC	1 cut(s)	194
SaqAI	TTAA	1 cut(s)	44
Sau96I	GGNCC	3 cut(s)	372, 671, 683
ScrFI	CCNGG	9 cut(s)	133, 236, 310, 348, 492, 493, 551, 736, 737
SduI	GDGCHC	2 cut(s)	146, 347
SexAI	ACCWGGT	1 cut(s)	131
SfaNI	GCATC	1 cut(s)	666
Sfr303I	CCGCGG	1 cut(s)	23
SgrBI	CCGCGG	1 cut(s)	23
SinI	GGWCC	2 cut(s)	372, 671
SmaI	CCCGGG	2 cut(s)	493, 737
SmiMI	CAYNNNNRTG	1 cut(s)	516
SphI	GCATGC	1 cut(s)	431
Sse9I	AATT	1 cut(s)	790
SsiI	CCGC	8 cut(s)	20, 22, 120, 168, 264, 370, 406, 732
SspMI	CTAG	2 cut(s)	50, 612
StyD4I	CCNGG	9 cut(s)	131, 234, 308, 346, 490, 491, 549, 734, 735
TaaI	ACNGT	1 cut(s)	185
TaiI	ACGT	2 cut(s)	201, 582
TaqI	TCGA	3 cut(s)	195, 381, 660
TasI	AATT	1 cut(s)	790
TauI	GCSGC	4 cut(s)	25, 171, 267, 408
Tru1I	TTAA	1 cut(s)	44
Tru9I	TTAA	1 cut(s)	44
TscAI	CASTG	2 cut(s)	166, 394
TseFI	GTSAC	4 cut(s)	152, 161, 319, 331
TseI	GCWGC	8 cut(s)	4, 53, 56, 74, 87, 90, 93, 395
Tsp45I	GTSAC	4 cut(s)	152, 161, 319, 331
TspDTI	ATGAA	1 cut(s)	534
TspGWI	ACGGA	2 cut(s)	267, 448
TspMI	CCCGGG	2 cut(s)	491, 735
TspRI	CASTG	2 cut(s)	166, 394
Van91I	CCANNNNNTGG	1 cut(s)	537
VpaK11BI	GGWCC	2 cut(s)	372, 671
XagI	CCTNNNNNAGG	1 cut(s)	678
XceI	RCATGY	3 cut(s)	177, 431, 638
XmaI	CCCGGG	2 cut(s)	491, 735
XmiI	GTMKAC	1 cut(s)	195
XspI	CTAG	2 cut(s)	50, 612
ZraI	GACGTC	1 cut(s)	580
Zsp2I	ATGCAT	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.