Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0009571

Physical Location & Seq

Genomic Coordinates Forward (+)

32030111 .. 32032833

Gene Structure 2723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1250100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGCAGCTCCTCCACCGCGGCTTCGGCATTGTTTTGGTGCTGAATTCGTTGCTTCTGCTTGTGTCTTGTCAAGTTCAGCAACCCGGGGCCAACACCCGCTGGCTCCCAGCCACCGCCACCTGGTACGGCAGCCCCGAAGGCGACGGCAGCGACGGTGGAGCATGTGGTTACGGGTCAATGGTGGACGTGAAGCCGTACAGGGCGAGGGTTGGGGCGGTGAGCCCAGTGCTGTTCAAGAGTGGCGAGGGGTGCGGGGCGTGTTACAAAGTCAAGTGTCTCGACCAGAGCATCTGTTCAAGACGAGCCGTCACGATAATCGTGACGGACGAGTGCCCTGGTGGTTACTGCTCGAATGGGCGCACCCACTTCGACCTCAGTGGCGCCGCCTTTGGACGCATGGCTGTCGCCGGTGAAGGCGGTCTGCTCAGGAACCGAGGCGAGCTCTCTGTCCTTTACCGACGGACACCATGTAAATATCCTGGGAAGCAAATAGCCTTCCATGTAAATGAAGGTTCAACAAATTACTGGCTATCACTTCTGGTAGAGTTTGAGGATGGAGATGGAGACGTCGGATCGATGCATATAAGACCAGCAAGTTCCAGTGAGTGGATCGCGATGAGTCACGTATGGGGAGCTAATTGGTGCATAAATGGGGGTCCTCTAAATGGACCATTCTCAGTGAAGATTACAACTCTCTCAACAGCAAAAACTCTCTCTGCCAGAGACGTCATTCCCAGTAATTGGTCTCCAAAAGCCACTTACACTTCTCGCCTAAATTTCCGCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006949 GO:0008150 GO:0009506 GO:0009653 GO:0009987 GO:0016020 GO:0030054 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

263

Amino Acids

28.22

Weight (kDa)

8.81

Isoelectric Point (pI)

35.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	72 - 139	3.6e-15	Lytic transglycolase
Expansin_C	PF01357	164 - 245	3.5e-26	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28250 AT4G28250 AT4G28250 AT4G28250
fragaria_vesca	FvH4_6g26120 FvH4_6g26120 FvH4_6g26120
malus_domestica	MD09G1250100.v1.1 MD17G1242600.v1.1
prunus_persica	Prupe.3G155600_v2.0.a1
pyrus_communis	pycom09g16670 pycom17g24540
rosa_chinensis	RchiOBHm_Chr2g0126231
rosa_laevigata	RLG00000018894
rosa_multiflora	Rmu_ssc0000264.1_g000020
rosa_roxburghii	Rroxscaffold_2G00117360
rosa_rugosa	Rorug02G0261900
rosa_samantha	Rh2AG318900 Rh2BG327400 Rh2DG345700 Rh2DG347100
rosa_wichuraiana	Rw2G025850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	570, 729
AccB1I	GGYRCC	1 cut(s)	380
AccB7I	CCANNNNNTGG	2 cut(s)	606, 741
AccII	CGCG	2 cut(s)	18, 614
AciI	CCGC	9 cut(s)	16, 18, 97, 114, 215, 252, 384, 417, 781
AclWI	GGATC	2 cut(s)	580, 617
AcsI	RAATTY	2 cut(s)	43, 775
AcyI	GRCGYC	3 cut(s)	381, 567, 726
AfaI	GTAC	2 cut(s)	125, 197
AfiI	CCNNNNNNNGG	4 cut(s)	120, 606, 665, 741
AgsI	TTSAA	3 cut(s)	235, 297, 516
AhdI	GACNNNNNGTC	1 cut(s)	305
AjiI	CACGTC	1 cut(s)	187
AjnI	CCWGG	3 cut(s)	119, 334, 478
AluBI	AGCT	3 cut(s)	7, 442, 635
AluI	AGCT	3 cut(s)	7, 442, 635
Alw21I	GWGCWC	1 cut(s)	444
Alw26I	GTCTC	4 cut(s)	281, 558, 717, 750
AlwI	GGATC	2 cut(s)	580, 617
Ama87I	CYCGRG	1 cut(s)	83
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	3 cut(s)	4, 129, 147
ApoI	RAATTY	2 cut(s)	43, 775
AspLEI	GCGC	2 cut(s)	360, 383
AspS9I	GGNCC	3 cut(s)	87, 656, 668
AsuC2I	CCSGG	2 cut(s)	84, 85
AsuHPI	GGTGA	2 cut(s)	229, 422
AvaI	CYCGRG	1 cut(s)	83
AvaII	GGWCC	2 cut(s)	656, 668
BaeGI	GKGCMC	1 cut(s)	335
BanI	GGYRCC	1 cut(s)	380
BanII	GRGCYC	2 cut(s)	224, 444
Bbv12I	GWGCWC	1 cut(s)	444
BbvI	GCAGC	3 cut(s)	16, 141, 159
BccI	CCATC	2 cut(s)	548, 554
BceAI	ACGGC	4 cut(s)	142, 160, 178, 290
BcgI	CGANNNNNNTGC	4 cut(s)	349, 383, 385, 419
BciT130I	CCWGG	3 cut(s)	121, 336, 480
BcnI	CCSGG	2 cut(s)	84, 85
BcoDI	GTCTC	4 cut(s)	281, 558, 717, 750
BfaI	CTAG	1 cut(s)	787
BfoI	RGCGCY	1 cut(s)	384
BglI	GCCNNNNNGGC	1 cut(s)	138
BisI	GCNGC	5 cut(s)	5, 19, 130, 148, 384
BlsI	GCNGC	5 cut(s)	6, 20, 131, 149, 385
Bme1390I	CCNGG	5 cut(s)	84, 85, 121, 336, 480
Bme18I	GGWCC	2 cut(s)	656, 668
BmeRI	GACNNNNNGTC	1 cut(s)	305
BmeT110I	CYCGRG	1 cut(s)	83
BmgBI	CACGTC	1 cut(s)	187
BmgT120I	GGNCC	3 cut(s)	87, 656, 668
BmiI	GGNNCC	5 cut(s)	88, 104, 382, 431, 657
BmrFI	CCNGG	5 cut(s)	84, 85, 121, 336, 480
BmrI	ACTGGG	2 cut(s)	218, 729
BmsI	GCATC	2 cut(s)	297, 567
BmuI	ACTGGG	2 cut(s)	218, 729
BplI	GAGNNNNNCTC	2 cut(s)	426, 458
Bpu10I	CCTNAGC	1 cut(s)	425
BpuMI	CCSGG	2 cut(s)	84, 85
Bsa29I	ATCGAT	1 cut(s)	575
BsaAI	YACGTR	1 cut(s)	625
BsaHI	GRCGYC	3 cut(s)	381, 567, 726
BsaI	GGTCTC	1 cut(s)	750
BsaJI	CCNNGG	6 cut(s)	16, 83, 84, 334, 433, 479
Bsc4I	CCNNNNNNNGG	4 cut(s)	120, 606, 665, 741
Bse118I	RCCGGY	1 cut(s)	407
Bse1I	ACTGG	4 cut(s)	224, 530, 600, 735
BseBI	CCWGG	3 cut(s)	121, 336, 480
BseCI	ATCGAT	1 cut(s)	575
BseDI	CCNNGG	6 cut(s)	16, 83, 84, 334, 433, 479
BseGI	GGATG	1 cut(s)	559
BseLI	CCNNNNNNNGG	4 cut(s)	120, 606, 665, 741
BseMII	CTCAG	3 cut(s)	388, 439, 690
BseNI	ACTGG	4 cut(s)	224, 530, 600, 735
BseSI	GKGCMC	1 cut(s)	335
BseXI	GCAGC	3 cut(s)	16, 141, 159
BseYI	CCCAGC	1 cut(s)	106
Bsh1236I	CGCG	2 cut(s)	18, 614
BshFI	GGCC	1 cut(s)	89
BshNI	GGYRCC	1 cut(s)	380
BshVI	ATCGAT	1 cut(s)	575
BsiHKAI	GWGCWC	1 cut(s)	444
BsiHKCI	CYCGRG	1 cut(s)	83
BsiSI	CCGG	2 cut(s)	84, 408
BslI	CCNNNNNNNGG	4 cut(s)	120, 606, 665, 741
BsmAI	GTCTC	4 cut(s)	281, 558, 717, 750
BsmBI	CGTCTC	2 cut(s)	558, 717
BsnI	GGCC	1 cut(s)	89
Bso31I	GGTCTC	1 cut(s)	750
BsoBI	CYCGRG	1 cut(s)	83
Bsp1286I	GDGCHC	3 cut(s)	224, 335, 444
Bsp143I	GATC	2 cut(s)	572, 609
Bsp68I	TCGCGA	1 cut(s)	614
BspACI	CCGC	9 cut(s)	16, 18, 97, 114, 215, 252, 384, 417, 781
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	3 cut(s)	387, 438, 689
BspDI	ATCGAT	1 cut(s)	575
BspFNI	CGCG	2 cut(s)	18, 614
BspLI	GGNNCC	5 cut(s)	88, 104, 382, 431, 657
BspPI	GGATC	2 cut(s)	580, 617
BspT107I	GGYRCC	1 cut(s)	380
BspTNI	GGTCTC	1 cut(s)	750
BsrFI	RCCGGY	1 cut(s)	407
BsrI	ACTGG	4 cut(s)	224, 530, 600, 735
BssAI	RCCGGY	1 cut(s)	407
BssECI	CCNNGG	6 cut(s)	16, 83, 84, 334, 433, 479
BssMI	GATC	2 cut(s)	572, 609
BssNI	GRCGYC	3 cut(s)	381, 567, 726
Bst2UI	CCWGG	3 cut(s)	121, 336, 480
Bst4CI	ACNGT	1 cut(s)	155
BstACI	GRCGYC	3 cut(s)	381, 567, 726
BstBAI	YACGTR	1 cut(s)	625
BstC8I	GCNNGC	2 cut(s)	101, 440
BstDEI	CTNAG	3 cut(s)	374, 425, 676
BstDSI	CCRYGG	1 cut(s)	16
BstF5I	GGATG	1 cut(s)	559
BstFNI	CGCG	2 cut(s)	18, 614
BstH2I	RGCGCY	1 cut(s)	384
BstHHI	GCGC	2 cut(s)	360, 383
BstKTI	GATC	2 cut(s)	575, 612
BstMAI	GTCTC	4 cut(s)	281, 558, 717, 750
BstMBI	GATC	2 cut(s)	572, 609
BstMWI	GCNNNNNNNGC	4 cut(s)	24, 138, 147, 249
BstNI	CCWGG	3 cut(s)	121, 336, 480
BstNSI	RCATGY	1 cut(s)	165
BstSCI	CCNGG	5 cut(s)	82, 83, 119, 334, 478
BstSLI	GKGCMC	1 cut(s)	335
BstUI	CGCG	2 cut(s)	18, 614
BstV1I	GCAGC	3 cut(s)	16, 141, 159
Bsu15I	ATCGAT	1 cut(s)	575
BsuRI	GGCC	1 cut(s)	89
BsuTUI	ATCGAT	1 cut(s)	575
BtgI	CCRYGG	1 cut(s)	16
BtgZI	GCGATG	1 cut(s)	629
BtrI	CACGTC	1 cut(s)	187
BtsCI	GGATG	1 cut(s)	559
BtsIMutI	CAGTG	4 cut(s)	231, 382, 607, 684
BtuMI	TCGCGA	1 cut(s)	614
Cac8I	GCNNGC	2 cut(s)	101, 440
CfoI	GCGC	2 cut(s)	360, 383
Cfr10I	RCCGGY	1 cut(s)	407
Cfr13I	GGNCC	3 cut(s)	87, 656, 668
Cfr42I	CCGCGG	1 cut(s)	19
Cfr9I	CCCGGG	1 cut(s)	83
ClaI	ATCGAT	1 cut(s)	575
CseI	GACGC	1 cut(s)	402
CsiI	ACCWGGT	1 cut(s)	119
Csp6I	GTAC	2 cut(s)	124, 196
CviAII	CATG	4 cut(s)	162, 397, 468, 500
CviQI	GTAC	2 cut(s)	124, 196
DdeI	CTNAG	3 cut(s)	374, 425, 676
DinI	GGCGCC	1 cut(s)	382
DpnI	GATC	2 cut(s)	574, 611
DpnII	GATC	2 cut(s)	572, 609
DriI	GACNNNNNGTC	1 cut(s)	305
Eam1105I	GACNNNNNGTC	1 cut(s)	305
Ecl136II	GAGCTC	1 cut(s)	442
Eco24I	GRGCYC	2 cut(s)	224, 444
Eco31I	GGTCTC	1 cut(s)	750
Eco47I	GGWCC	2 cut(s)	656, 668
Eco53kI	GAGCTC	1 cut(s)	442
Eco88I	CYCGRG	1 cut(s)	83
EcoICRI	GAGCTC	1 cut(s)	442
EcoO109I	RGGNCCY	1 cut(s)	656
EcoRI	GAATTC	1 cut(s)	43
EcoRII	CCWGG	3 cut(s)	119, 334, 478
EcoT22I	ATGCAT	1 cut(s)	582
EcoT38I	GRGCYC	2 cut(s)	224, 444
EgeI	GGCGCC	1 cut(s)	382
EheI	GGCGCC	1 cut(s)	382
Esp3I	CGTCTC	2 cut(s)	558, 717
FaeI	CATG	4 cut(s)	165, 400, 471, 503
FaiI	YATR	8 cut(s)	163, 398, 469, 501, 582, 584, 628, 647
FatI	CATG	4 cut(s)	161, 396, 467, 499
FauI	CCCGC	2 cut(s)	104, 245
Fnu4HI	GCNGC	5 cut(s)	5, 19, 130, 148, 384
FokI	GGATG	1 cut(s)	566
FriOI	GRGCYC	2 cut(s)	224, 444
Fsp4HI	GCNGC	5 cut(s)	5, 19, 130, 148, 384
FspBI	CTAG	1 cut(s)	787
GlaI	GCGC	2 cut(s)	359, 382
GluI	GCNGC	5 cut(s)	5, 19, 130, 148, 384
GsaI	CCCAGC	1 cut(s)	110
HaeII	RGCGCY	1 cut(s)	384
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	2 cut(s)	84, 408
HgaI	GACGC	1 cut(s)	402
HhaI	GCGC	2 cut(s)	360, 383
Hin1I	GRCGYC	3 cut(s)	381, 567, 726
Hin1II	CATG	4 cut(s)	165, 400, 471, 503
Hin6I	GCGC	2 cut(s)	358, 381
HinP1I	GCGC	2 cut(s)	358, 381
HinfI	GANTC	1 cut(s)	619
HpaII	CCGG	2 cut(s)	84, 408
HphI	GGTGA	2 cut(s)	229, 422
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	1 cut(s)	572
Hpy188III	TCNNGA	7 cut(s)	235, 278, 297, 310, 319, 427, 613
Hpy8I	GTNNAC	1 cut(s)	184
Hpy99I	CGWCG	4 cut(s)	146, 155, 462, 572
HpyAV	CCTTC	4 cut(s)	131, 407, 503, 505
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4IV	ACGT	4 cut(s)	186, 567, 624, 726
HpyCH4V	TGCA	3 cut(s)	4, 580, 645
HpyF10VI	GCNNNNNNNGC	4 cut(s)	24, 138, 147, 249
HpyF3I	CTNAG	3 cut(s)	374, 425, 676
HpySE526I	ACGT	4 cut(s)	186, 567, 624, 726
Hsp92I	GRCGYC	3 cut(s)	381, 567, 726
Hsp92II	CATG	4 cut(s)	165, 400, 471, 503
HspAI	GCGC	2 cut(s)	358, 381
KasI	GGCGCC	1 cut(s)	380
KspI	CCGCGG	1 cut(s)	19
Kzo9I	GATC	2 cut(s)	572, 609
LmnI	GCTCC	4 cut(s)	12, 108, 158, 632
Lsp1109I	GCAGC	3 cut(s)	16, 141, 159
LweI	GCATC	2 cut(s)	297, 567
MabI	ACCWGGT	1 cut(s)	119
MaeI	CTAG	1 cut(s)	787
MaeII	ACGT	4 cut(s)	186, 567, 624, 726
MaeIII	GTNAC	6 cut(s)	167, 260, 307, 319, 341, 620
MalI	GATC	2 cut(s)	574, 611
MboI	GATC	2 cut(s)	572, 609
MboII	GAAGA	1 cut(s)	694
MhlI	GDGCHC	3 cut(s)	224, 335, 444
MluCI	AATT	5 cut(s)	43, 520, 637, 739, 775
Mly113I	GGCGCC	1 cut(s)	381
MlyI	GAGTC	1 cut(s)	628
MmeI	TCCRAC	1 cut(s)	550
MnlI	CCTC	7 cut(s)	20, 198, 238, 383, 428, 544, 669
Mph1103I	ATGCAT	1 cut(s)	582
MslI	CAYNNNNRTG	1 cut(s)	504
MspA1I	CMGCKG	2 cut(s)	18, 99
MspI	CCGG	2 cut(s)	84, 408
MspR9I	CCNGG	5 cut(s)	84, 85, 121, 336, 480
MvaI	CCWGG	3 cut(s)	121, 336, 480
MvnI	CGCG	2 cut(s)	18, 614
MwoI	GCNNNNNNNGC	4 cut(s)	24, 138, 147, 249
NarI	GGCGCC	1 cut(s)	381
NciI	CCSGG	2 cut(s)	84, 85
NdeII	GATC	2 cut(s)	572, 609
NlaIII	CATG	4 cut(s)	165, 400, 471, 503
NlaIV	GGNNCC	5 cut(s)	88, 104, 382, 431, 657
NmuCI	GTSAC	3 cut(s)	307, 319, 620
NruI	TCGCGA	1 cut(s)	614
NsiI	ATGCAT	1 cut(s)	582
NspI	RCATGY	1 cut(s)	165
PcsI	WCGNNNNNNNCGW	2 cut(s)	132, 324
PflMI	CCANNNNNTGG	2 cut(s)	606, 741
PkrI	GCNGC	5 cut(s)	6, 20, 131, 149, 385
PleI	GAGTC	1 cut(s)	627
PluTI	GGCGCC	1 cut(s)	384
PpsI	GAGTC	1 cut(s)	627
Ppu21I	YACGTR	1 cut(s)	625
PpuMI	RGGWCCY	1 cut(s)	656
Psp124BI	GAGCTC	1 cut(s)	444
Psp5II	RGGWCCY	1 cut(s)	656
Psp6I	CCWGG	3 cut(s)	119, 334, 478
PspFI	CCCAGC	1 cut(s)	106
PspGI	CCWGG	3 cut(s)	119, 334, 478
PspN4I	GGNNCC	5 cut(s)	88, 104, 382, 431, 657
PspPI	GGNCC	3 cut(s)	87, 656, 668
PspPPI	RGGWCCY	1 cut(s)	656
RruI	TCGCGA	1 cut(s)	614
RsaI	GTAC	2 cut(s)	125, 197
RsaNI	GTAC	2 cut(s)	124, 196
RseI	CAYNNNNRTG	1 cut(s)	504
SacI	GAGCTC	1 cut(s)	444
SacII	CCGCGG	1 cut(s)	19
SatI	GCNGC	5 cut(s)	5, 19, 130, 148, 384
Sau3AI	GATC	2 cut(s)	572, 609
Sau96I	GGNCC	3 cut(s)	87, 656, 668
SchI	GAGTC	1 cut(s)	628
ScrFI	CCNGG	5 cut(s)	84, 85, 121, 336, 480
SduI	GDGCHC	3 cut(s)	224, 335, 444
SexAI	ACCWGGT	1 cut(s)	119
SfaNI	GCATC	2 cut(s)	297, 567
SfoI	GGCGCC	1 cut(s)	382
Sfr303I	CCGCGG	1 cut(s)	19
SgrAI	CRCCGGYG	1 cut(s)	407
SgrBI	CCGCGG	1 cut(s)	19
SinI	GGWCC	2 cut(s)	656, 668
SmaI	CCCGGG	1 cut(s)	85
SmiMI	CAYNNNNRTG	1 cut(s)	504
Sse9I	AATT	5 cut(s)	43, 520, 637, 739, 775
SsiI	CCGC	9 cut(s)	16, 18, 97, 114, 215, 252, 384, 417, 781
SspDI	GGCGCC	1 cut(s)	380
SspMI	CTAG	1 cut(s)	787
SstI	GAGCTC	1 cut(s)	444
StyD4I	CCNGG	5 cut(s)	82, 83, 119, 334, 478
TaaI	ACNGT	1 cut(s)	155
TaiI	ACGT	4 cut(s)	189, 570, 627, 729
TaqI	TCGA	4 cut(s)	279, 350, 369, 575
TasI	AATT	5 cut(s)	43, 520, 637, 739, 775
TauI	GCSGC	2 cut(s)	21, 386
TscAI	CASTG	4 cut(s)	231, 382, 607, 684
TseFI	GTSAC	3 cut(s)	307, 319, 620
TseI	GCWGC	3 cut(s)	4, 129, 147
Tsp45I	GTSAC	3 cut(s)	307, 319, 620
TspDTI	ATGAA	1 cut(s)	522
TspGWI	ACGGA	2 cut(s)	338, 475
TspMI	CCCGGG	1 cut(s)	83
TspRI	CASTG	4 cut(s)	231, 382, 607, 684
Van91I	CCANNNNNTGG	2 cut(s)	606, 741
VpaK11BI	GGWCC	2 cut(s)	656, 668
XapI	RAATTY	2 cut(s)	43, 775
XceI	RCATGY	1 cut(s)	165
XmaI	CCCGGG	1 cut(s)	83
XspI	CTAG	1 cut(s)	787
ZraI	GACGTC	2 cut(s)	568, 727
Zsp2I	ATGCAT	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.