pycom09g16670

Belongs to the expansin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0009571
Physical Location & Seq
Forward (+)
16996936 .. 16999238
2303 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g16670.1

Sequence Viewer

Length: 789 bp
ATGCAGCTCCTCCACCGTGGCTGCGGCCTTGTTTTGGTGCTGACTTCGTTGCTTCTGCTTGTGTCTTGTCAAGTTCAGCAACCCGGGGCCAACACCCGCTGGCTCCCAGCCACCGCCACCTGGTACGGCAGCCCCGAAGGCGACGGCAGCGACGGCGGAGCATGTGGGTACGGGTCAATGGTGGACGTGAAGCCGTACAGGGCGTGGGTTGGGGCGGTGAGCCCAGTGCTGTTCAAGAGCGGCGAGGGGTGCGGGGCGTGTTACAAAGTCAAGTGTCTCGACCAGAGCATCTGTTCGAGACGAGCCGTCACGATAATTGTGACGGATGAGTGCCCGGGTGGTTACTGCTCGAATGGGCGCACCCACTTCGACCTCAGTGGCGCCGCCTTTGGACGCATGGCTGTCGCCGGTAATGGCGGTCTGCTCAGAAACCGAGGCGAGCTCTCTGTCCTTTACCGACGGACACCATGTAAATATCCTGGGAAGCAAATAGCCTTCCATGTAAATGAAGGTTCAACAAATTATTGGCTATCACTTCTGGTAGAGTTTGAGGATGGAGATGGAGACGTCGGATCGATGCATATAAGACCAGCAAGTTCTAGTGAGTGGATCGAGATGAGCCATGTCTGGGGAGCTAATTGGTGCATAAATGGGGGTCCCCTAAATGGACCATTCTCAGTGAAGATTACAACTCTCTCAACAGCAAAAACTCTCTCTGCCAGAGACGTCATTCCCAGTAATTGGTCTCCAAAAGCCACTTACACTTCTCGCCTAAATTTCCACTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006949 GO:0008150 GO:0009506 GO:0009653 GO:0009987 GO:0016020 GO:0030054 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

263

Amino Acids

28.16

Weight (kDa)

8.47

Isoelectric Point (pI)

36.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DPBB_1 PF03330 72 - 139 2.8e-15 Lytic transglycolase
Expansin_C PF01357 164 - 245 4.2e-26 Expansin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 570, 729
AccB1I GGYRCC 1 cut(s) 380
AccB7I CCANNNNNTGG 1 cut(s) 741
AccBSI CCGCTC 1 cut(s) 240
AciI CCGC 9 cut(s) 24, 97, 114, 156, 215, 240, 252, 384, 417
AclWI GGATC 2 cut(s) 580, 617
AcsI RAATTY 1 cut(s) 775
AcyI GRCGYC 3 cut(s) 381, 567, 726
AfaI GTAC 3 cut(s) 125, 170, 197
AfiI CCNNNNNNNGG 5 cut(s) 34, 120, 628, 665, 741
AgsI TTSAA 2 cut(s) 235, 516
AhdI GACNNNNNGTC 1 cut(s) 305
AjiI CACGTC 1 cut(s) 187
AjnI CCWGG 2 cut(s) 119, 478
AluBI AGCT 3 cut(s) 7, 442, 635
AluI AGCT 3 cut(s) 7, 442, 635
Alw21I GWGCWC 1 cut(s) 444
Alw26I GTCTC 5 cut(s) 281, 292, 558, 717, 750
AlwI GGATC 2 cut(s) 580, 617
Ama87I CYCGRG 2 cut(s) 83, 334
AoxI GGCC 2 cut(s) 25, 87
ApeKI GCWGC 4 cut(s) 4, 21, 129, 147
ApoI RAATTY 1 cut(s) 775
AspLEI GCGC 2 cut(s) 360, 383
AspS9I GGNCC 3 cut(s) 87, 656, 668
AsuC2I CCSGG 4 cut(s) 84, 85, 335, 336
AsuHPI GGTGA 1 cut(s) 229
AvaI CYCGRG 2 cut(s) 83, 334
AvaII GGWCC 2 cut(s) 656, 668
BaeGI GKGCMC 1 cut(s) 335
BanI GGYRCC 1 cut(s) 380
BanII GRGCYC 2 cut(s) 224, 444
Bbv12I GWGCWC 1 cut(s) 444
BbvI GCAGC 4 cut(s) 8, 16, 141, 159
BccI CCATC 2 cut(s) 548, 554
BceAI ACGGC 5 cut(s) 142, 160, 169, 178, 290
BcgI CGANNNNNNTGC 4 cut(s) 349, 383, 385, 419
BciT130I CCWGG 2 cut(s) 121, 480
BcnI CCSGG 4 cut(s) 84, 85, 335, 336
BcoDI GTCTC 5 cut(s) 281, 292, 558, 717, 750
BfaI CTAG 2 cut(s) 600, 787
BfoI RGCGCY 1 cut(s) 384
BglI GCCNNNNNGGC 1 cut(s) 138
BisI GCNGC 7 cut(s) 5, 22, 25, 130, 148, 241, 384
BlsI GCNGC 7 cut(s) 6, 23, 26, 131, 149, 242, 385
Bme1390I CCNGG 6 cut(s) 84, 85, 121, 335, 336, 480
Bme18I GGWCC 2 cut(s) 656, 668
BmeRI GACNNNNNGTC 1 cut(s) 305
BmeT110I CYCGRG 2 cut(s) 83, 334
BmgBI CACGTC 1 cut(s) 187
BmgT120I GGNCC 3 cut(s) 87, 656, 668
BmiI GGNNCC 5 cut(s) 88, 104, 382, 657, 658
BmrFI CCNGG 6 cut(s) 84, 85, 121, 335, 336, 480
BmrI ACTGGG 2 cut(s) 218, 729
BmsI GCATC 2 cut(s) 297, 567
BmuI ACTGGG 2 cut(s) 218, 729
BplI GAGNNNNNCTC 2 cut(s) 426, 458
BpuMI CCSGG 4 cut(s) 84, 85, 335, 336
Bsa29I ATCGAT 1 cut(s) 575
BsaHI GRCGYC 3 cut(s) 381, 567, 726
BsaI GGTCTC 1 cut(s) 750
BsaJI CCNNGG 6 cut(s) 16, 83, 84, 334, 433, 479
Bsc4I CCNNNNNNNGG 5 cut(s) 34, 120, 628, 665, 741
Bse118I RCCGGY 1 cut(s) 407
Bse1I ACTGG 2 cut(s) 224, 735
BseBI CCWGG 2 cut(s) 121, 480
BseCI ATCGAT 1 cut(s) 575
BseDI CCNNGG 6 cut(s) 16, 83, 84, 334, 433, 479
BseGI GGATG 2 cut(s) 331, 559
BseLI CCNNNNNNNGG 5 cut(s) 34, 120, 628, 665, 741
BseMII CTCAG 3 cut(s) 388, 439, 690
BseNI ACTGG 2 cut(s) 224, 735
BseSI GKGCMC 1 cut(s) 335
BseXI GCAGC 4 cut(s) 8, 16, 141, 159
BseYI CCCAGC 1 cut(s) 106
BshFI GGCC 2 cut(s) 27, 89
BshNI GGYRCC 1 cut(s) 380
BshVI ATCGAT 1 cut(s) 575
BsiHKAI GWGCWC 1 cut(s) 444
BsiHKCI CYCGRG 2 cut(s) 83, 334
BsiSI CCGG 3 cut(s) 84, 335, 408
BslFI GGGAC 1 cut(s) 642
BslI CCNNNNNNNGG 5 cut(s) 34, 120, 628, 665, 741
BsmAI GTCTC 5 cut(s) 281, 292, 558, 717, 750
BsmBI CGTCTC 3 cut(s) 292, 558, 717
BsmFI GGGAC 1 cut(s) 642
BsnI GGCC 2 cut(s) 27, 89
Bso31I GGTCTC 1 cut(s) 750
BsoBI CYCGRG 2 cut(s) 83, 334
Bsp1286I GDGCHC 3 cut(s) 224, 335, 444
Bsp143I GATC 2 cut(s) 572, 609
BspACI CCGC 9 cut(s) 24, 97, 114, 156, 215, 240, 252, 384, 417
BspANI GGCC 2 cut(s) 27, 89
BspCNI CTCAG 3 cut(s) 387, 438, 689
BspDI ATCGAT 1 cut(s) 575
BspLI GGNNCC 5 cut(s) 88, 104, 382, 657, 658
BspPI GGATC 2 cut(s) 580, 617
BspT107I GGYRCC 1 cut(s) 380
BspTNI GGTCTC 1 cut(s) 750
BsrBI CCGCTC 1 cut(s) 240
BsrFI RCCGGY 1 cut(s) 407
BsrI ACTGG 2 cut(s) 224, 735
BssAI RCCGGY 1 cut(s) 407
BssECI CCNNGG 6 cut(s) 16, 83, 84, 334, 433, 479
BssMI GATC 2 cut(s) 572, 609
BssNI GRCGYC 3 cut(s) 381, 567, 726
Bst2UI CCWGG 2 cut(s) 121, 480
Bst4CI ACNGT 1 cut(s) 17
BstACI GRCGYC 3 cut(s) 381, 567, 726
BstC8I GCNNGC 2 cut(s) 101, 440
BstDEI CTNAG 3 cut(s) 374, 425, 676
BstDSI CCRYGG 1 cut(s) 16
BstF5I GGATG 2 cut(s) 331, 559
BstH2I RGCGCY 1 cut(s) 384
BstHHI GCGC 2 cut(s) 360, 383
BstKTI GATC 2 cut(s) 575, 612
BstMAI GTCTC 5 cut(s) 281, 292, 558, 717, 750
BstMBI GATC 2 cut(s) 572, 609
BstMWI GCNNNNNNNGC 4 cut(s) 138, 147, 153, 249
BstNI CCWGG 2 cut(s) 121, 480
BstNSI RCATGY 1 cut(s) 165
BstSCI CCNGG 6 cut(s) 82, 83, 119, 333, 334, 478
BstSLI GKGCMC 1 cut(s) 335
BstV1I GCAGC 4 cut(s) 8, 16, 141, 159
Bsu15I ATCGAT 1 cut(s) 575
BsuRI GGCC 2 cut(s) 27, 89
BsuTUI ATCGAT 1 cut(s) 575
BtgI CCRYGG 1 cut(s) 16
BtrI CACGTC 1 cut(s) 187
BtsCI GGATG 2 cut(s) 331, 559
BtsIMutI CAGTG 3 cut(s) 231, 382, 684
Cac8I GCNNGC 2 cut(s) 101, 440
CfoI GCGC 2 cut(s) 360, 383
Cfr10I RCCGGY 1 cut(s) 407
Cfr13I GGNCC 3 cut(s) 87, 656, 668
Cfr9I CCCGGG 2 cut(s) 83, 334
ClaI ATCGAT 1 cut(s) 575
CseI GACGC 1 cut(s) 402
CsiI ACCWGGT 1 cut(s) 119
Csp6I GTAC 3 cut(s) 124, 169, 196
CviAII CATG 5 cut(s) 162, 397, 468, 500, 623
CviQI GTAC 3 cut(s) 124, 169, 196
DdeI CTNAG 3 cut(s) 374, 425, 676
DinI GGCGCC 1 cut(s) 382
DpnI GATC 2 cut(s) 574, 611
DpnII GATC 2 cut(s) 572, 609
DriI GACNNNNNGTC 1 cut(s) 305
Eam1105I GACNNNNNGTC 1 cut(s) 305
EciI GGCGGA 1 cut(s) 171
Ecl136II GAGCTC 1 cut(s) 442
Eco24I GRGCYC 2 cut(s) 224, 444
Eco31I GGTCTC 1 cut(s) 750
Eco47I GGWCC 2 cut(s) 656, 668
Eco53kI GAGCTC 1 cut(s) 442
Eco88I CYCGRG 2 cut(s) 83, 334
EcoICRI GAGCTC 1 cut(s) 442
EcoO109I RGGNCCY 1 cut(s) 656
EcoRII CCWGG 2 cut(s) 119, 478
EcoT22I ATGCAT 1 cut(s) 582
EcoT38I GRGCYC 2 cut(s) 224, 444
EgeI GGCGCC 1 cut(s) 382
EheI GGCGCC 1 cut(s) 382
Esp3I CGTCTC 3 cut(s) 292, 558, 717
FaeI CATG 5 cut(s) 165, 400, 471, 503, 626
FaiI YATR 8 cut(s) 163, 398, 469, 501, 582, 584, 624, 647
FaqI GGGAC 1 cut(s) 642
FatI CATG 5 cut(s) 161, 396, 467, 499, 622
FauI CCCGC 2 cut(s) 104, 245
Fnu4HI GCNGC 7 cut(s) 5, 22, 25, 130, 148, 241, 384
FokI GGATG 2 cut(s) 338, 566
FriOI GRGCYC 2 cut(s) 224, 444
Fsp4HI GCNGC 7 cut(s) 5, 22, 25, 130, 148, 241, 384
FspBI CTAG 2 cut(s) 600, 787
GlaI GCGC 2 cut(s) 359, 382
GluI GCNGC 7 cut(s) 5, 22, 25, 130, 148, 241, 384
GsaI CCCAGC 1 cut(s) 110
HaeII RGCGCY 1 cut(s) 384
HaeIII GGCC 2 cut(s) 27, 89
HapII CCGG 3 cut(s) 84, 335, 408
HgaI GACGC 1 cut(s) 402
HhaI GCGC 2 cut(s) 360, 383
Hin1I GRCGYC 3 cut(s) 381, 567, 726
Hin1II CATG 5 cut(s) 165, 400, 471, 503, 626
Hin6I GCGC 2 cut(s) 358, 381
HinP1I GCGC 2 cut(s) 358, 381
HpaII CCGG 3 cut(s) 84, 335, 408
HphI GGTGA 1 cut(s) 229
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 2 cut(s) 428, 572
Hpy188III TCNNGA 5 cut(s) 235, 278, 297, 310, 613
Hpy8I GTNNAC 1 cut(s) 184
Hpy99I CGWCG 4 cut(s) 146, 155, 462, 572
HpyAV CCTTC 3 cut(s) 131, 503, 505
HpyCH4III ACNGT 1 cut(s) 17
HpyCH4IV ACGT 3 cut(s) 186, 567, 726
HpyCH4V TGCA 3 cut(s) 4, 580, 645
HpyF10VI GCNNNNNNNGC 4 cut(s) 138, 147, 153, 249
HpyF3I CTNAG 3 cut(s) 374, 425, 676
HpySE526I ACGT 3 cut(s) 186, 567, 726
Hsp92I GRCGYC 3 cut(s) 381, 567, 726
Hsp92II CATG 5 cut(s) 165, 400, 471, 503, 626
HspAI GCGC 2 cut(s) 358, 381
KasI GGCGCC 1 cut(s) 380
KflI GGGWCCC 1 cut(s) 656
Kzo9I GATC 2 cut(s) 572, 609
LmnI GCTCC 4 cut(s) 12, 108, 158, 632
Lsp1109I GCAGC 4 cut(s) 8, 16, 141, 159
LweI GCATC 2 cut(s) 297, 567
MabI ACCWGGT 1 cut(s) 119
MaeI CTAG 2 cut(s) 600, 787
MaeII ACGT 3 cut(s) 186, 567, 726
MaeIII GTNAC 4 cut(s) 260, 307, 319, 341
MalI GATC 2 cut(s) 574, 611
MbiI CCGCTC 1 cut(s) 240
MboI GATC 2 cut(s) 572, 609
MboII GAAGA 1 cut(s) 694
MhlI GDGCHC 3 cut(s) 224, 335, 444
MluCI AATT 5 cut(s) 315, 520, 637, 739, 775
Mly113I GGCGCC 1 cut(s) 381
MmeI TCCRAC 1 cut(s) 550
MnlI CCTC 5 cut(s) 20, 238, 383, 428, 544
Mph1103I ATGCAT 1 cut(s) 582
MslI CAYNNNNRTG 1 cut(s) 504
MspA1I CMGCKG 1 cut(s) 99
MspI CCGG 3 cut(s) 84, 335, 408
MspR9I CCNGG 6 cut(s) 84, 85, 121, 335, 336, 480
MvaI CCWGG 2 cut(s) 121, 480
MwoI GCNNNNNNNGC 4 cut(s) 138, 147, 153, 249
NarI GGCGCC 1 cut(s) 381
NciI CCSGG 4 cut(s) 84, 85, 335, 336
NdeII GATC 2 cut(s) 572, 609
NlaIII CATG 5 cut(s) 165, 400, 471, 503, 626
NlaIV GGNNCC 5 cut(s) 88, 104, 382, 657, 658
NmuCI GTSAC 2 cut(s) 307, 319
NsiI ATGCAT 1 cut(s) 582
NspI RCATGY 1 cut(s) 165
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PflMI CCANNNNNTGG 1 cut(s) 741
PkrI GCNGC 7 cut(s) 6, 23, 26, 131, 149, 242, 385
PluTI GGCGCC 1 cut(s) 384
PpuMI RGGWCCY 1 cut(s) 656
Psp124BI GAGCTC 1 cut(s) 444
Psp5II RGGWCCY 1 cut(s) 656
Psp6I CCWGG 2 cut(s) 119, 478
PspFI CCCAGC 1 cut(s) 106
PspGI CCWGG 2 cut(s) 119, 478
PspN4I GGNNCC 5 cut(s) 88, 104, 382, 657, 658
PspPI GGNCC 3 cut(s) 87, 656, 668
PspPPI RGGWCCY 1 cut(s) 656
RsaI GTAC 3 cut(s) 125, 170, 197
RsaNI GTAC 3 cut(s) 124, 169, 196
RseI CAYNNNNRTG 1 cut(s) 504
SacI GAGCTC 1 cut(s) 444
SatI GCNGC 7 cut(s) 5, 22, 25, 130, 148, 241, 384
Sau3AI GATC 2 cut(s) 572, 609
Sau96I GGNCC 3 cut(s) 87, 656, 668
ScrFI CCNGG 6 cut(s) 84, 85, 121, 335, 336, 480
SduI GDGCHC 3 cut(s) 224, 335, 444
SetI ASST 9 cut(s) 9, 122, 189, 375, 444, 514, 570, 637, 729
SexAI ACCWGGT 1 cut(s) 119
SfaNI GCATC 2 cut(s) 297, 567
SfoI GGCGCC 1 cut(s) 382
SinI GGWCC 2 cut(s) 656, 668
SmaI CCCGGG 2 cut(s) 85, 336
SmiMI CAYNNNNRTG 1 cut(s) 504
Sse9I AATT 5 cut(s) 315, 520, 637, 739, 775
SsiI CCGC 9 cut(s) 24, 97, 114, 156, 215, 240, 252, 384, 417
SspDI GGCGCC 1 cut(s) 380
SspMI CTAG 2 cut(s) 600, 787
SstI GAGCTC 1 cut(s) 444
StyD4I CCNGG 6 cut(s) 82, 83, 119, 333, 334, 478
TaaI ACNGT 1 cut(s) 17
TaiI ACGT 3 cut(s) 189, 570, 729
TaqI TCGA 6 cut(s) 279, 296, 350, 369, 575, 612
TasI AATT 5 cut(s) 315, 520, 637, 739, 775
TauI GCSGC 3 cut(s) 27, 243, 386
TscAI CASTG 3 cut(s) 231, 382, 684
TseFI GTSAC 2 cut(s) 307, 319
TseI GCWGC 4 cut(s) 4, 21, 129, 147
Tsp45I GTSAC 2 cut(s) 307, 319
TspDTI ATGAA 1 cut(s) 522
TspGWI ACGGA 2 cut(s) 338, 475
TspMI CCCGGG 2 cut(s) 83, 334
TspRI CASTG 3 cut(s) 231, 382, 684
Van91I CCANNNNNTGG 1 cut(s) 741
VpaK11BI GGWCC 2 cut(s) 656, 668
XapI RAATTY 1 cut(s) 775
XceI RCATGY 1 cut(s) 165
XmaI CCCGGG 2 cut(s) 83, 334
XspI CTAG 2 cut(s) 600, 787
ZraI GACGTC 2 cut(s) 568, 727
Zsp2I ATGCAT 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.