Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0009571

Physical Location & Seq

Genomic Coordinates Forward (+)

17378280 .. 17380733

Gene Structure 2454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G155600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGCAGCTCCTCCTCCGTCATGGCTCTGGGCTTCTGCTGGTTCTCCTGGTGGCCAATTGTTTGGGGCGGCTTGTCGCCTCAGCTCAAGTTCAGCACCCGGTGGGGACGCACACGGTATGGCTCCCAGCCATCGCCACCTGGTACGGCAGCCCCGAAGGAGACGGCAGCGACGGCGGAGCATGTGGGTACGGGTCGATGGTGGACGTGAAGCCGTTGAGGGCGAGGGTGGGAGCAGTGAACCCGGTGCTGTTCAAGAACGGCGAGGGGTGCGGGGCGTGCTACAAAGTGAAGTGCCTGGACAAGAGCATATGCTCGAGAAGAGCGGTGACGATAATCGTGACGGACGAGTGCCCCGGTTGCTCCAAGGATAGGACCCAATTCGATCTCAGCGGCGCCGCCTTCGGGCGCATGGCTGTGGCCGGTGAAGGTGGCTTGCTCAGAAACCGAGGCGAACTCTCAGTCCTTTACCGACGGACACCATGTAAATATCCAGGGAGGCAGGTGGCCTTCCATGTAAATGAAGGTTCAACAAATTTTTGGCTCTCACTTCTGGTAGAGTTTGAGGACGGAGATGGAGACGTTGGATCAATGCATATAAGACCAGCAAGTTCTAGTGAGTGGATACAGATGAACCATGTATGGGGTGCTAATTGGTGCATAAATGGAGGACCCTTAAACGGGCCTTTCTCAGTGAAGATAACGACGCTCTCAACAGCAAAAACTCTTTCTGCCAGAGATGTGATTCCAAGCAATTGGTCTCCAAAAGCCACTTACACTTCTCGCCTAAATTTCCACTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006949 GO:0008150 GO:0009506 GO:0009653 GO:0009987 GO:0016020 GO:0030054 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

267

Amino Acids

28.58

Weight (kDa)

8.83

Isoelectric Point (pI)

28.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28250 AT4G28250 AT4G28250 AT4G28250
fragaria_vesca	FvH4_6g26120 FvH4_6g26120 FvH4_6g26120
malus_domestica	MD09G1250100.v1.1 MD17G1242600.v1.1
prunus_persica	Prupe.3G155600_v2.0.a1
pyrus_communis	pycom09g16670 pycom17g24540
rosa_chinensis	RchiOBHm_Chr2g0126231
rosa_laevigata	RLG00000018894
rosa_multiflora	Rmu_ssc0000264.1_g000020
rosa_roxburghii	Rroxscaffold_2G00117360
rosa_rugosa	Rorug02G0261900
rosa_samantha	Rh2AG318900 Rh2BG327400 Rh2DG345700 Rh2DG347100
rosa_wichuraiana	Rw2G025850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	490
Acc36I	ACCTGC	1 cut(s)	490
AccB1I	GGYRCC	1 cut(s)	392
AccBSI	CCGCTC	1 cut(s)	323
AciI	CCGC	6 cut(s)	67, 174, 270, 323, 390, 396
AclWI	GGATC	1 cut(s)	592
AcoI	YGGCCR	2 cut(s)	51, 417
AcsI	RAATTY	2 cut(s)	532, 787
AcyI	GRCGYC	1 cut(s)	393
AdeI	CACNNNGTG	1 cut(s)	100
AfaI	GTAC	2 cut(s)	143, 188
AfiI	CCNNNNNNNGG	5 cut(s)	369, 402, 640, 677, 678
AgsI	TTSAA	2 cut(s)	253, 528
AjiI	CACGTC	1 cut(s)	205
AjnI	CCWGG	4 cut(s)	45, 137, 294, 490
AloI	GAACNNNNNNTCC	2 cut(s)	444, 476
AluBI	AGCT	2 cut(s)	7, 83
AluI	AGCT	2 cut(s)	7, 83
Alw26I	GTCTC	3 cut(s)	153, 570, 762
AlwI	GGATC	1 cut(s)	592
Ama87I	CYCGRG	1 cut(s)	313
AoxI	GGCC	4 cut(s)	51, 417, 504, 680
ApeKI	GCWGC	3 cut(s)	4, 147, 165
ApoI	RAATTY	2 cut(s)	532, 787
ArsI	GACNNNNNNTTYG	2 cut(s)	444, 476
AspLEI	GCGC	2 cut(s)	395, 408
AspS9I	GGNCC	3 cut(s)	372, 668, 680
AsuC2I	CCSGG	3 cut(s)	98, 242, 354
AsuHPI	GGTGA	2 cut(s)	337, 434
AvaI	CYCGRG	1 cut(s)	313
AvaII	GGWCC	2 cut(s)	372, 668
BaeGI	GKGCMC	1 cut(s)	353
BalI	TGGCCA	1 cut(s)	53
BanI	GGYRCC	1 cut(s)	392
BbvCI	CCTCAGC	1 cut(s)	79
BbvI	GCAGC	3 cut(s)	16, 159, 177
BccI	CCATC	3 cut(s)	137, 190, 566
BceAI	ACGGC	5 cut(s)	160, 178, 187, 196, 274
BciT130I	CCWGG	4 cut(s)	47, 139, 296, 492
BciVI	GTATCC	1 cut(s)	615
BcnI	CCSGG	3 cut(s)	98, 242, 354
BcoDI	GTCTC	3 cut(s)	153, 570, 762
BfaI	CTAG	2 cut(s)	612, 799
BfoI	RGCGCY	1 cut(s)	396
BfuAI	ACCTGC	1 cut(s)	490
BfuI	GTATCC	1 cut(s)	615
BisI	GCNGC	6 cut(s)	5, 68, 148, 166, 391, 396
BlsI	GCNGC	6 cut(s)	6, 69, 149, 167, 392, 397
Bme1390I	CCNGG	7 cut(s)	47, 98, 139, 242, 296, 354, 492
Bme18I	GGWCC	2 cut(s)	372, 668
BmeT110I	CYCGRG	1 cut(s)	313
BmgBI	CACGTC	1 cut(s)	205
BmgT120I	GGNCC	3 cut(s)	372, 668, 680
BmiI	GGNNCC	4 cut(s)	122, 374, 394, 670
BmrFI	CCNGG	7 cut(s)	47, 98, 139, 242, 296, 354, 492
BplI	GAGNNNNNCTC	2 cut(s)	438, 470
Bpu10I	CCTNAGC	1 cut(s)	79
BpuEI	CTTGAG	1 cut(s)	69
BpuMI	CCSGG	3 cut(s)	98, 242, 354
BsaHI	GRCGYC	1 cut(s)	393
BsaI	GGTCTC	1 cut(s)	762
BsaJI	CCNNGG	4 cut(s)	352, 363, 445, 491
Bsc4I	CCNNNNNNNGG	5 cut(s)	369, 402, 640, 677, 678
Bse118I	RCCGGY	1 cut(s)	419
BseBI	CCWGG	4 cut(s)	47, 139, 296, 492
BseDI	CCNNGG	4 cut(s)	352, 363, 445, 491
BseLI	CCNNNNNNNGG	5 cut(s)	369, 402, 640, 677, 678
BseMII	CTCAG	5 cut(s)	93, 400, 451, 471, 702
BseSI	GKGCMC	1 cut(s)	353
BseXI	GCAGC	3 cut(s)	16, 159, 177
BseYI	CCCAGC	1 cut(s)	124
BshFI	GGCC	4 cut(s)	53, 419, 506, 682
BshNI	GGYRCC	1 cut(s)	392
BsiHKCI	CYCGRG	1 cut(s)	313
BsiSI	CCGG	4 cut(s)	98, 242, 354, 420
BslFI	GGGAC	1 cut(s)	118
BslI	CCNNNNNNNGG	5 cut(s)	369, 402, 640, 677, 678
BsmAI	GTCTC	3 cut(s)	153, 570, 762
BsmBI	CGTCTC	2 cut(s)	153, 570
BsmFI	GGGAC	1 cut(s)	118
BsnI	GGCC	4 cut(s)	53, 419, 506, 682
Bso31I	GGTCTC	1 cut(s)	762
BsoBI	CYCGRG	1 cut(s)	313
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp143I	GATC	2 cut(s)	382, 584
BspACI	CCGC	6 cut(s)	67, 174, 270, 323, 390, 396
BspANI	GGCC	4 cut(s)	53, 419, 506, 682
BspCNI	CTCAG	5 cut(s)	92, 399, 450, 470, 701
BspLI	GGNNCC	4 cut(s)	122, 374, 394, 670
BspMI	ACCTGC	1 cut(s)	490
BspPI	GGATC	1 cut(s)	592
BspQI	GCTCTTC	1 cut(s)	313
BspT107I	GGYRCC	1 cut(s)	392
BspTNI	GGTCTC	1 cut(s)	762
BsrBI	CCGCTC	1 cut(s)	323
BsrFI	RCCGGY	1 cut(s)	419
BssAI	RCCGGY	1 cut(s)	419
BssECI	CCNNGG	4 cut(s)	352, 363, 445, 491
BssMI	GATC	2 cut(s)	382, 584
BssNI	GRCGYC	1 cut(s)	393
BssT1I	CCWWGG	1 cut(s)	363
Bst2UI	CCWGG	4 cut(s)	47, 139, 296, 492
Bst4CI	ACNGT	1 cut(s)	115
Bst6I	CTCTTC	1 cut(s)	313
BstACI	GRCGYC	1 cut(s)	393
BstC8I	GCNNGC	2 cut(s)	277, 434
BstDEI	CTNAG	5 cut(s)	79, 386, 437, 457, 688
BstH2I	RGCGCY	1 cut(s)	396
BstHHI	GCGC	2 cut(s)	395, 408
BstKTI	GATC	2 cut(s)	385, 587
BstMAI	GTCTC	3 cut(s)	153, 570, 762
BstMBI	GATC	2 cut(s)	382, 584
BstMWI	GCNNNNNNNGC	4 cut(s)	171, 267, 276, 357
BstNI	CCWGG	4 cut(s)	47, 139, 296, 492
BstNSI	RCATGY	1 cut(s)	183
BstSCI	CCNGG	7 cut(s)	45, 96, 137, 240, 294, 352, 490
BstSLI	GKGCMC	1 cut(s)	353
BstV1I	GCAGC	3 cut(s)	16, 159, 177
BstXI	CCANNNNNNTGG	2 cut(s)	61, 753
BsuI	GTATCC	1 cut(s)	615
BsuRI	GGCC	4 cut(s)	53, 419, 506, 682
BtgZI	GCGATG	1 cut(s)	115
BtrI	CACGTC	1 cut(s)	205
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	2 cut(s)	240, 696
BveI	ACCTGC	1 cut(s)	490
Cac8I	GCNNGC	2 cut(s)	277, 434
CfoI	GCGC	2 cut(s)	395, 408
Cfr10I	RCCGGY	1 cut(s)	419
Cfr13I	GGNCC	3 cut(s)	372, 668, 680
CseI	GACGC	2 cut(s)	115, 712
CsiI	ACCWGGT	1 cut(s)	137
Csp6I	GTAC	2 cut(s)	142, 187
CviAII	CATG	6 cut(s)	20, 180, 409, 480, 512, 635
CviQI	GTAC	2 cut(s)	142, 187
DdeI	CTNAG	5 cut(s)	79, 386, 437, 457, 688
DinI	GGCGCC	1 cut(s)	394
DpnI	GATC	2 cut(s)	384, 586
DpnII	GATC	2 cut(s)	382, 584
DraIII	CACNNNGTG	1 cut(s)	100
EaeI	YGGCCR	2 cut(s)	51, 417
Eam1104I	CTCTTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	313
EciI	GGCGGA	1 cut(s)	189
Eco130I	CCWWGG	1 cut(s)	363
Eco31I	GGTCTC	1 cut(s)	762
Eco47I	GGWCC	2 cut(s)	372, 668
Eco88I	CYCGRG	1 cut(s)	313
EcoO109I	RGGNCCY	2 cut(s)	372, 668
EcoRII	CCWGG	4 cut(s)	45, 137, 294, 490
EcoT14I	CCWWGG	1 cut(s)	363
EcoT22I	ATGCAT	1 cut(s)	594
EgeI	GGCGCC	1 cut(s)	394
EheI	GGCGCC	1 cut(s)	394
ErhI	CCWWGG	1 cut(s)	363
Esp3I	CGTCTC	2 cut(s)	153, 570
FaeI	CATG	6 cut(s)	23, 183, 412, 483, 515, 638
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	6 cut(s)	19, 179, 408, 479, 511, 634
FauI	CCCGC	1 cut(s)	263
FauNDI	CATATG	1 cut(s)	308
Fnu4HI	GCNGC	6 cut(s)	5, 68, 148, 166, 391, 396
Fsp4HI	GCNGC	6 cut(s)	5, 68, 148, 166, 391, 396
FspBI	CTAG	2 cut(s)	612, 799
GlaI	GCGC	2 cut(s)	394, 407
GluI	GCNGC	6 cut(s)	5, 68, 148, 166, 391, 396
GsaI	CCCAGC	1 cut(s)	128
HaeII	RGCGCY	1 cut(s)	396
HaeIII	GGCC	4 cut(s)	53, 419, 506, 682
HapII	CCGG	4 cut(s)	98, 242, 354, 420
HgaI	GACGC	2 cut(s)	115, 712
HhaI	GCGC	2 cut(s)	395, 408
Hin1I	GRCGYC	1 cut(s)	393
Hin1II	CATG	6 cut(s)	23, 183, 412, 483, 515, 638
Hin6I	GCGC	2 cut(s)	393, 406
HinP1I	GCGC	2 cut(s)	393, 406
HinfI	GANTC	1 cut(s)	742
HpaII	CCGG	4 cut(s)	98, 242, 354, 420
HphI	GGTGA	2 cut(s)	337, 434
Hpy166II	GTNNAC	2 cut(s)	202, 238
Hpy188I	TCNGA	1 cut(s)	440
Hpy188III	TCNNGA	3 cut(s)	253, 315, 337
Hpy8I	GTNNAC	2 cut(s)	202, 238
Hpy99I	CGWCG	3 cut(s)	173, 474, 706
HpyAV	CCTTC	5 cut(s)	149, 409, 419, 515, 517
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4IV	ACGT	2 cut(s)	204, 579
HpyCH4V	TGCA	3 cut(s)	4, 592, 657
HpyF10VI	GCNNNNNNNGC	4 cut(s)	171, 267, 276, 357
HpyF3I	CTNAG	5 cut(s)	79, 386, 437, 457, 688
HpySE526I	ACGT	2 cut(s)	204, 579
Hsp92I	GRCGYC	1 cut(s)	393
Hsp92II	CATG	6 cut(s)	23, 183, 412, 483, 515, 638
HspAI	GCGC	2 cut(s)	393, 406
KasI	GGCGCC	1 cut(s)	392
Kzo9I	GATC	2 cut(s)	382, 584
LguI	GCTCTTC	1 cut(s)	313
LmnI	GCTCC	5 cut(s)	12, 126, 176, 230, 365
Lsp1109I	GCAGC	3 cut(s)	16, 159, 177
MabI	ACCWGGT	1 cut(s)	137
MaeI	CTAG	2 cut(s)	612, 799
MaeII	ACGT	2 cut(s)	204, 579
MaeIII	GTNAC	2 cut(s)	325, 337
MalI	GATC	2 cut(s)	384, 586
MbiI	CCGCTC	1 cut(s)	323
MboI	GATC	2 cut(s)	382, 584
MboII	GAAGA	2 cut(s)	330, 706
MfeI	CAATTG	2 cut(s)	55, 751
MhlI	GDGCHC	1 cut(s)	353
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	6 cut(s)	55, 377, 532, 649, 751, 787
MluNI	TGGCCA	1 cut(s)	53
Mly113I	GGCGCC	1 cut(s)	393
MmeI	TCCRAC	1 cut(s)	562
Mox20I	TGGCCA	1 cut(s)	53
Mph1103I	ATGCAT	1 cut(s)	594
MscI	TGGCCA	1 cut(s)	53
MseI	TTAA	1 cut(s)	674
MslI	CAYNNNNRTG	2 cut(s)	413, 516
Msp20I	TGGCCA	1 cut(s)	53
MspA1I	CMGCKG	1 cut(s)	390
MspI	CCGG	4 cut(s)	98, 242, 354, 420
MspR9I	CCNGG	7 cut(s)	47, 98, 139, 242, 296, 354, 492
MunI	CAATTG	2 cut(s)	55, 751
MvaI	CCWGG	4 cut(s)	47, 139, 296, 492
MwoI	GCNNNNNNNGC	4 cut(s)	171, 267, 276, 357
NarI	GGCGCC	1 cut(s)	393
NciI	CCSGG	3 cut(s)	98, 242, 354
NdeI	CATATG	1 cut(s)	308
NdeII	GATC	2 cut(s)	382, 584
NlaIII	CATG	6 cut(s)	23, 183, 412, 483, 515, 638
NlaIV	GGNNCC	4 cut(s)	122, 374, 394, 670
NmuCI	GTSAC	2 cut(s)	325, 337
NsiI	ATGCAT	1 cut(s)	594
NspI	RCATGY	1 cut(s)	183
PaeR7I	CTCGAG	1 cut(s)	313
PaqCI	CACCTGC	1 cut(s)	490
PciSI	GCTCTTC	1 cut(s)	313
PcsI	WCGNNNNNNNCGW	2 cut(s)	150, 342
PfeI	GAWTC	1 cut(s)	742
PkrI	GCNGC	6 cut(s)	6, 69, 149, 167, 392, 397
PluTI	GGCGCC	1 cut(s)	396
PpuMI	RGGWCCY	2 cut(s)	372, 668
Psp5II	RGGWCCY	2 cut(s)	372, 668
Psp6I	CCWGG	4 cut(s)	45, 137, 294, 490
PspFI	CCCAGC	1 cut(s)	124
PspGI	CCWGG	4 cut(s)	45, 137, 294, 490
PspN4I	GGNNCC	4 cut(s)	122, 374, 394, 670
PspPI	GGNCC	3 cut(s)	372, 668, 680
PspPPI	RGGWCCY	2 cut(s)	372, 668
RsaI	GTAC	2 cut(s)	143, 188
RsaNI	GTAC	2 cut(s)	142, 187
RseI	CAYNNNNRTG	2 cut(s)	413, 516
SapI	GCTCTTC	1 cut(s)	313
SaqAI	TTAA	1 cut(s)	674
SatI	GCNGC	6 cut(s)	5, 68, 148, 166, 391, 396
Sau3AI	GATC	2 cut(s)	382, 584
Sau96I	GGNCC	3 cut(s)	372, 668, 680
ScrFI	CCNGG	7 cut(s)	47, 98, 139, 242, 296, 354, 492
SduI	GDGCHC	1 cut(s)	353
SetI	ASST	8 cut(s)	9, 85, 140, 207, 430, 504, 526, 582
SexAI	ACCWGGT	1 cut(s)	137
SfoI	GGCGCC	1 cut(s)	394
Sfr274I	CTCGAG	1 cut(s)	313
SinI	GGWCC	2 cut(s)	372, 668
SlaI	CTCGAG	1 cut(s)	313
SmiMI	CAYNNNNRTG	2 cut(s)	413, 516
SmlI	CTYRAG	2 cut(s)	84, 313
SmoI	CTYRAG	2 cut(s)	84, 313
Sse9I	AATT	6 cut(s)	55, 377, 532, 649, 751, 787
SsiI	CCGC	6 cut(s)	67, 174, 270, 323, 390, 396
SspDI	GGCGCC	1 cut(s)	392
SspMI	CTAG	2 cut(s)	612, 799
StyD4I	CCNGG	7 cut(s)	45, 96, 137, 240, 294, 352, 490
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	1 cut(s)	115
TaiI	ACGT	2 cut(s)	207, 582
TaqI	TCGA	3 cut(s)	194, 314, 381
TasI	AATT	6 cut(s)	55, 377, 532, 649, 751, 787
TauI	GCSGC	3 cut(s)	70, 393, 398
TfiI	GAWTC	1 cut(s)	742
Tru1I	TTAA	1 cut(s)	674
Tru9I	TTAA	1 cut(s)	674
TscAI	CASTG	2 cut(s)	240, 696
TseFI	GTSAC	2 cut(s)	325, 337
TseI	GCWGC	3 cut(s)	4, 147, 165
Tsp45I	GTSAC	2 cut(s)	325, 337
TspDTI	ATGAA	2 cut(s)	534, 644
TspGWI	ACGGA	4 cut(s)	5, 356, 487, 582
TspRI	CASTG	2 cut(s)	240, 696
VpaK11BI	GGWCC	2 cut(s)	372, 668
XapI	RAATTY	2 cut(s)	532, 787
XceI	RCATGY	1 cut(s)	183
XhoI	CTCGAG	1 cut(s)	313
XspI	CTAG	2 cut(s)	612, 799
Zsp2I	ATGCAT	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.