Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009571

Physical Location & Seq

Genomic Coordinates Forward (+)

42365744 .. 42367767

Gene Structure 2024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG327400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGCAGCCCCTCCAATTTGGCCTATTATTGCTGGTCAATTCTGCGATGCTGTTAATAATTGTTACAGCTCAAAACACGCATTGGCTTCCTGCCACAGCCACCTGGTACGGCAGCCCCGAAGGTGACGGCAGTGACGGCGGGGCATGTGGGTACGGATCCTTAGTGGACGTGAAGCCATTGAGAGCGAGAGTGGGCGCAGTGAGCCCGGTGCTATTCAAGAACGGCGAGGGTTGCGGCGCATGTTACAAAGTCAAGTGTTTGGACAAGTCCATCTGCTCCAGGCGAGCCGTCACCATAATCGTCACCGACGAGTGCCCCGGTGGCTACTGCTCAGGTGGGCGGACCCATTTCGACCTCAGTGGCGCAGCCTTTGGCCGCATGGCTATTGCCGGTGAGCATGGTCTGCTCAGAAACCGAGGCGAACTATCCGTTCTTTACCGACGGACACCATGTAAATATCCTGGGAAGCAGGTGGCCTTCCATGTGAACGAAGGTTCAACCAACTATTGGCTCTCACTTCTGGTAGAGTTTGAAGATGGAGATGGAGATGTCGGATCAATGCATATAAGACAAGTACGATGCTTAATATCATTCATATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006949 GO:0008150 GO:0009506 GO:0009653 GO:0009987 GO:0016020 GO:0030054 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

200

Amino Acids

21.51

Weight (kDa)

8.07

Isoelectric Point (pI)

33.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	66 - 138	9.6e-16	Lytic transglycolase
Expansin_C	PF01357	158 - 192	1.1e-06	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28250 AT4G28250 AT4G28250 AT4G28250
fragaria_vesca	FvH4_6g26120 FvH4_6g26120 FvH4_6g26120
malus_domestica	MD09G1250100.v1.1 MD17G1242600.v1.1
prunus_persica	Prupe.3G155600_v2.0.a1
pyrus_communis	pycom09g16670 pycom17g24540
rosa_chinensis	RchiOBHm_Chr2g0126231
rosa_laevigata	RLG00000018894
rosa_multiflora	Rmu_ssc0000264.1_g000020
rosa_roxburghii	Rroxscaffold_2G00117360
rosa_rugosa	Rorug02G0261900
rosa_samantha	Rh2AG318900 Rh2BG327400 Rh2DG345700 Rh2DG347100
rosa_wichuraiana	Rw2G025850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	460
Acc36I	ACCTGC	1 cut(s)	460
AccB7I	CCANNNNNTGG	1 cut(s)	507
AciI	CCGC	4 cut(s)	138, 234, 340, 376
AclWI	GGATC	3 cut(s)	150, 163, 562
AcoI	YGGCCR	1 cut(s)	373
AfaI	GTAC	3 cut(s)	107, 152, 576
AfiI	CCNNNNNNNGG	1 cut(s)	507
AgsI	TTSAA	3 cut(s)	217, 498, 533
AjiI	CACGTC	1 cut(s)	169
AjnI	CCWGG	3 cut(s)	101, 278, 460
AluBI	AGCT	1 cut(s)	68
AluI	AGCT	1 cut(s)	68
AlwI	GGATC	3 cut(s)	150, 163, 562
AoxI	GGCC	3 cut(s)	19, 373, 474
ApeKI	GCWGC	3 cut(s)	4, 111, 365
AspLEI	GCGC	3 cut(s)	197, 239, 365
AspS9I	GGNCC	1 cut(s)	342
AsuC2I	CCSGG	2 cut(s)	206, 318
AsuHPI	GGTGA	4 cut(s)	134, 283, 295, 404
AvaII	GGWCC	1 cut(s)	342
BaeGI	GKGCMC	1 cut(s)	317
BamHI	GGATCC	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	206
BbvI	GCAGC	3 cut(s)	16, 123, 377
BccI	CCATC	3 cut(s)	278, 530, 536
BceAI	ACGGC	5 cut(s)	124, 142, 151, 238, 272
BciT130I	CCWGG	3 cut(s)	103, 280, 462
BcnI	CCSGG	2 cut(s)	206, 318
BfuAI	ACCTGC	1 cut(s)	460
BglI	GCCNNNNNGGC	1 cut(s)	321
BisI	GCNGC	5 cut(s)	5, 112, 235, 366, 376
BlsI	GCNGC	5 cut(s)	6, 113, 236, 367, 377
Bme1390I	CCNGG	5 cut(s)	103, 206, 280, 318, 462
Bme18I	GGWCC	1 cut(s)	342
BmgBI	CACGTC	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	342
BmiI	GGNNCC	2 cut(s)	157, 344
BmrFI	CCNGG	5 cut(s)	103, 206, 280, 318, 462
BmsI	GCATC	2 cut(s)	36, 569
BpmI	CTGGAG	1 cut(s)	262
Bpu10I	CCTNAGC	1 cut(s)	331
BpuMI	CCSGG	2 cut(s)	206, 318
BsaJI	CCNNGG	3 cut(s)	316, 415, 461
Bsc4I	CCNNNNNNNGG	1 cut(s)	507
Bse118I	RCCGGY	1 cut(s)	389
BseBI	CCWGG	3 cut(s)	103, 280, 462
BseDI	CCNNGG	3 cut(s)	316, 415, 461
BseLI	CCNNNNNNNGG	1 cut(s)	507
BseMII	CTCAG	3 cut(s)	345, 370, 421
BseSI	GKGCMC	1 cut(s)	317
BseXI	GCAGC	3 cut(s)	16, 123, 377
BshFI	GGCC	3 cut(s)	21, 375, 476
BsiSI	CCGG	3 cut(s)	206, 318, 390
BslI	CCNNNNNNNGG	1 cut(s)	507
BsnI	GGCC	3 cut(s)	21, 375, 476
Bsp1286I	GDGCHC	2 cut(s)	206, 317
Bsp143I	GATC	2 cut(s)	155, 554
BspACI	CCGC	4 cut(s)	138, 234, 340, 376
BspANI	GGCC	3 cut(s)	21, 375, 476
BspCNI	CTCAG	3 cut(s)	344, 369, 420
BspLI	GGNNCC	2 cut(s)	157, 344
BspMI	ACCTGC	1 cut(s)	460
BspPI	GGATC	3 cut(s)	150, 163, 562
BsrFI	RCCGGY	1 cut(s)	389
BssAI	RCCGGY	1 cut(s)	389
BssECI	CCNNGG	3 cut(s)	316, 415, 461
BssMI	GATC	2 cut(s)	155, 554
Bst2UI	CCWGG	3 cut(s)	103, 280, 462
BstAPI	GCANNNNNTGC	1 cut(s)	403
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	4 cut(s)	160, 331, 356, 407
BstHHI	GCGC	3 cut(s)	197, 239, 365
BstKTI	GATC	2 cut(s)	158, 557
BstMBI	GATC	2 cut(s)	155, 554
BstMWI	GCNNNNNNNGC	5 cut(s)	135, 201, 231, 321, 403
BstNI	CCWGG	3 cut(s)	103, 280, 462
BstNSI	RCATGY	2 cut(s)	147, 243
BstSCI	CCNGG	5 cut(s)	101, 204, 278, 316, 460
BstSLI	GKGCMC	1 cut(s)	317
BstV1I	GCAGC	3 cut(s)	16, 123, 377
BstX2I	RGATCY	1 cut(s)	155
BstYI	RGATCY	1 cut(s)	155
BsuRI	GGCC	3 cut(s)	21, 375, 476
BtgZI	GCGATG	1 cut(s)	59
BtrI	CACGTC	1 cut(s)	169
BtsI	GCAGTG	2 cut(s)	136, 204
BtsIMutI	CAGTG	3 cut(s)	136, 204, 364
BveI	ACCTGC	1 cut(s)	460
Cac8I	GCNNGC	1 cut(s)	285
CfoI	GCGC	3 cut(s)	197, 239, 365
Cfr10I	RCCGGY	1 cut(s)	389
Cfr13I	GGNCC	1 cut(s)	342
CsiI	ACCWGGT	1 cut(s)	101
Csp6I	GTAC	3 cut(s)	106, 151, 575
CviAII	CATG	6 cut(s)	144, 240, 379, 398, 450, 482
CviQI	GTAC	3 cut(s)	106, 151, 575
DdeI	CTNAG	4 cut(s)	160, 331, 356, 407
DpnI	GATC	2 cut(s)	157, 556
DpnII	GATC	2 cut(s)	155, 554
EaeI	YGGCCR	1 cut(s)	373
EciI	GGCGGA	1 cut(s)	355
Eco24I	GRGCYC	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	342
EcoRII	CCWGG	3 cut(s)	101, 278, 460
EcoT22I	ATGCAT	1 cut(s)	564
EcoT38I	GRGCYC	1 cut(s)	206
FaeI	CATG	6 cut(s)	147, 243, 382, 401, 453, 485
FatI	CATG	6 cut(s)	143, 239, 378, 397, 449, 481
FauI	CCCGC	1 cut(s)	131
Fnu4HI	GCNGC	5 cut(s)	5, 112, 235, 366, 376
FriOI	GRGCYC	1 cut(s)	206
Fsp4HI	GCNGC	5 cut(s)	5, 112, 235, 366, 376
GlaI	GCGC	3 cut(s)	196, 238, 364
GluI	GCNGC	5 cut(s)	5, 112, 235, 366, 376
GsuI	CTGGAG	1 cut(s)	262
HaeIII	GGCC	3 cut(s)	21, 375, 476
HapII	CCGG	3 cut(s)	206, 318, 390
HhaI	GCGC	3 cut(s)	197, 239, 365
Hin1II	CATG	6 cut(s)	147, 243, 382, 401, 453, 485
Hin6I	GCGC	3 cut(s)	195, 237, 363
HinP1I	GCGC	3 cut(s)	195, 237, 363
HpaII	CCGG	3 cut(s)	206, 318, 390
HphI	GGTGA	4 cut(s)	134, 283, 295, 404
Hpy166II	GTNNAC	2 cut(s)	166, 487
Hpy188I	TCNGA	2 cut(s)	410, 554
Hpy188III	TCNNGA	2 cut(s)	217, 600
Hpy8I	GTNNAC	2 cut(s)	166, 487
Hpy99I	CGWCG	2 cut(s)	311, 444
HpyAV	CCTTC	3 cut(s)	113, 485, 487
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	2 cut(s)	4, 562
HpyF10VI	GCNNNNNNNGC	5 cut(s)	135, 201, 231, 321, 403
HpyF3I	CTNAG	4 cut(s)	160, 331, 356, 407
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	6 cut(s)	147, 243, 382, 401, 453, 485
HspAI	GCGC	3 cut(s)	195, 237, 363
Kzo9I	GATC	2 cut(s)	155, 554
LmnI	GCTCC	1 cut(s)	281
Lsp1109I	GCAGC	3 cut(s)	16, 123, 377
LweI	GCATC	2 cut(s)	36, 569
MabI	ACCWGGT	1 cut(s)	101
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	6 cut(s)	61, 122, 131, 242, 289, 301
MalI	GATC	2 cut(s)	157, 556
MboI	GATC	2 cut(s)	155, 554
MboII	GAAGA	1 cut(s)	545
MflI	RGATCY	1 cut(s)	155
MhlI	GDGCHC	2 cut(s)	206, 317
MluCI	AATT	3 cut(s)	14, 37, 57
MmeI	TCCRAC	1 cut(s)	532
MnlI	CCTC	4 cut(s)	20, 220, 365, 410
Mph1103I	ATGCAT	1 cut(s)	564
MseI	TTAA	2 cut(s)	53, 584
MspI	CCGG	3 cut(s)	206, 318, 390
MspR9I	CCNGG	5 cut(s)	103, 206, 280, 318, 462
MvaI	CCWGG	3 cut(s)	103, 280, 462
MwoI	GCNNNNNNNGC	5 cut(s)	135, 201, 231, 321, 403
NciI	CCSGG	2 cut(s)	206, 318
NdeII	GATC	2 cut(s)	155, 554
NlaIII	CATG	6 cut(s)	147, 243, 382, 401, 453, 485
NlaIV	GGNNCC	2 cut(s)	157, 344
NmuCI	GTSAC	4 cut(s)	122, 131, 289, 301
NsiI	ATGCAT	1 cut(s)	564
NspI	RCATGY	2 cut(s)	147, 243
PaqCI	CACCTGC	1 cut(s)	460
PcsI	WCGNNNNNNNCGW	2 cut(s)	114, 306
PflMI	CCANNNNNTGG	1 cut(s)	507
PkrI	GCNGC	5 cut(s)	6, 113, 236, 367, 377
Psp6I	CCWGG	3 cut(s)	101, 278, 460
PspGI	CCWGG	3 cut(s)	101, 278, 460
PspN4I	GGNNCC	2 cut(s)	157, 344
PspPI	GGNCC	1 cut(s)	342
PsuI	RGATCY	1 cut(s)	155
RsaI	GTAC	3 cut(s)	107, 152, 576
RsaNI	GTAC	3 cut(s)	106, 151, 575
SaqAI	TTAA	2 cut(s)	53, 584
SatI	GCNGC	5 cut(s)	5, 112, 235, 366, 376
Sau3AI	GATC	2 cut(s)	155, 554
Sau96I	GGNCC	1 cut(s)	342
ScrFI	CCNGG	5 cut(s)	103, 206, 280, 318, 462
SduI	GDGCHC	2 cut(s)	206, 317
SetI	ASST	8 cut(s)	70, 104, 124, 171, 337, 357, 474, 496
SexAI	ACCWGGT	1 cut(s)	101
SfaNI	GCATC	2 cut(s)	36, 569
SinI	GGWCC	1 cut(s)	342
Sse9I	AATT	3 cut(s)	14, 37, 57
SsiI	CCGC	4 cut(s)	138, 234, 340, 376
StyD4I	CCNGG	5 cut(s)	101, 204, 278, 316, 460
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	1 cut(s)	351
TasI	AATT	3 cut(s)	14, 37, 57
TauI	GCSGC	2 cut(s)	237, 378
Tru1I	TTAA	2 cut(s)	53, 584
Tru9I	TTAA	2 cut(s)	53, 584
TscAI	CASTG	3 cut(s)	136, 204, 364
TseFI	GTSAC	4 cut(s)	122, 131, 289, 301
TseI	GCWGC	3 cut(s)	4, 111, 365
Tsp45I	GTSAC	4 cut(s)	122, 131, 289, 301
TspDTI	ATGAA	1 cut(s)	583
TspGWI	ACGGA	3 cut(s)	168, 418, 457
TspRI	CASTG	3 cut(s)	136, 204, 364
Van91I	CCANNNNNTGG	1 cut(s)	507
VpaK11BI	GGWCC	1 cut(s)	342
XceI	RCATGY	2 cut(s)	147, 243
Zsp2I	ATGCAT	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.