Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0009571

Physical Location & Seq

Genomic Coordinates Forward (+)

29169670 .. 29172017

Gene Structure 2348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1242600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGCAGCTCCTCCACGGCGGCCTCGGCCTTGTGTTGGTTCTGAATTCGTTGCTTCTGCTTGTGTCTTGTCAAGTTCAGCAACCCCGGGCCAGCACCCGCTGGCTCCCAGCCATCGCCACCTGGTACGGCAACCCCGAAGGCGACGGCAGCGACGGCGGAGCGTGTGGGTACGGGTCAATGGTGGACGTGAAGCCGTTCAGGGCGAGGGTTGGTGCGGTGAACCCGGTTCTGTTCAAGAGCGGCGAGGGGTGCGGCGCGTGTTACAAAATCAAGTGTCTCGACCAGAGCATCTGCTCGAGACGACCCGTCACAATAATCGTGACAGATGAGTGTCCGGGCTGCTCGAAGGGGCCGGCCCAGTTCGACCTCAGCGGCGCCGCCTTTGGGCGCATGGCTGTGGCCGGCGAAGGCGGTTTGCTCAGAAACCAAGGCGAACTCTCCGTCCTTTACCGACGGACACCATGTAAGTATCCTGGGAAGCAGATAGCCTTCCATGTAAATGAAGGTTCAACAAATTATTGGCTATCACTGCTAGTAGAGTTTGAGGATGGAGATGGAGACGTCGGATCAATGCATATAAGACCGGCAAGTTCAAGCGAGTGGATCGAGATGAGTCATGTATGGGGAGCTAATTGGTGCATAAATGGGGGTCCTCTAAAAGGACCATTCTCAGTGAAGATTACAACTCTCTCGACAGCAAAAACTCTCTCAGCCAGAGATGTCATTCCCGGTAATTGGTCTCCAAAAGCCACTTACACTTCTCGCCTCAATTTCCACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006949 GO:0008150 GO:0009506 GO:0009653 GO:0009987 GO:0016020 GO:0030054 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

261

Amino Acids

27.96

Weight (kDa)

8.51

Isoelectric Point (pI)

39.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	72 - 137	1.5e-13	Lytic transglycolase
Expansin_C	PF01357	162 - 243	2.6e-26	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28250 AT4G28250 AT4G28250 AT4G28250
fragaria_vesca	FvH4_6g26120 FvH4_6g26120 FvH4_6g26120
malus_domestica	MD09G1250100.v1.1 MD17G1242600.v1.1
prunus_persica	Prupe.3G155600_v2.0.a1
pyrus_communis	pycom09g16670 pycom17g24540
rosa_chinensis	RchiOBHm_Chr2g0126231
rosa_laevigata	RLG00000018894
rosa_multiflora	Rmu_ssc0000264.1_g000020
rosa_roxburghii	Rroxscaffold_2G00117360
rosa_rugosa	Rorug02G0261900
rosa_samantha	Rh2AG318900 Rh2BG327400 Rh2DG345700 Rh2DG347100
rosa_wichuraiana	Rw2G025850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	564
AccB1I	GGYRCC	1 cut(s)	374
AccBSI	CCGCTC	1 cut(s)	240
AccII	CGCG	1 cut(s)	257
AciI	CCGC	9 cut(s)	18, 97, 156, 215, 240, 252, 372, 378, 411
AclWI	GGATC	2 cut(s)	574, 611
AcoI	YGGCCR	1 cut(s)	399
AcsI	RAATTY	1 cut(s)	43
AcyI	GRCGYC	2 cut(s)	375, 561
AfaI	GTAC	2 cut(s)	125, 170
AfiI	CCNNNNNNNGG	4 cut(s)	34, 384, 659, 735
AgsI	TTSAA	3 cut(s)	235, 510, 594
AhdI	GACNNNNNGTC	1 cut(s)	305
AjiI	CACGTC	1 cut(s)	187
AjnI	CCWGG	2 cut(s)	119, 472
AloI	GAACNNNNNNTCC	2 cut(s)	426, 458
AluBI	AGCT	2 cut(s)	7, 629
AluI	AGCT	2 cut(s)	7, 629
Alw26I	GTCTC	4 cut(s)	281, 292, 552, 744
AlwI	GGATC	2 cut(s)	574, 611
Ama87I	CYCGRG	2 cut(s)	84, 295
AoxI	GGCC	6 cut(s)	19, 25, 87, 350, 354, 399
ApeKI	GCWGC	3 cut(s)	4, 147, 339
ApoI	RAATTY	1 cut(s)	43
ArsI	GACNNNNNNTTYG	2 cut(s)	426, 458
Asp700I	GAANNNNTTC	1 cut(s)	194
AspLEI	GCGC	3 cut(s)	257, 377, 390
AspS9I	GGNCC	5 cut(s)	87, 350, 355, 650, 662
AsuC2I	CCSGG	5 cut(s)	85, 86, 224, 336, 729
AsuHPI	GGTGA	1 cut(s)	229
AvaI	CYCGRG	2 cut(s)	84, 295
AvaII	GGWCC	2 cut(s)	650, 662
BanI	GGYRCC	1 cut(s)	374
BbvCI	CCTCAGC	1 cut(s)	368
BbvI	GCAGC	3 cut(s)	16, 159, 326
BccI	CCATC	3 cut(s)	119, 542, 548
BceAI	ACGGC	5 cut(s)	31, 142, 160, 169, 178
BciT130I	CCWGG	2 cut(s)	121, 474
BciVI	GTATCC	1 cut(s)	480
BcnI	CCSGG	5 cut(s)	85, 86, 224, 336, 729
BcoDI	GTCTC	4 cut(s)	281, 292, 552, 744
BfaI	CTAG	2 cut(s)	533, 781
BfoI	RGCGCY	1 cut(s)	378
BfuI	GTATCC	1 cut(s)	480
BisI	GCNGC	8 cut(s)	5, 19, 148, 241, 253, 340, 373, 378
BlsI	GCNGC	8 cut(s)	6, 20, 149, 242, 254, 341, 374, 379
Bme1390I	CCNGG	7 cut(s)	85, 86, 121, 224, 336, 474, 729
Bme18I	GGWCC	2 cut(s)	650, 662
BmeRI	GACNNNNNGTC	1 cut(s)	305
BmeT110I	CYCGRG	2 cut(s)	84, 295
BmgBI	CACGTC	1 cut(s)	187
BmgT120I	GGNCC	5 cut(s)	87, 350, 355, 650, 662
BmiI	GGNNCC	4 cut(s)	104, 351, 376, 651
BmrFI	CCNGG	7 cut(s)	85, 86, 121, 224, 336, 474, 729
BmrI	ACTGGG	1 cut(s)	352
BmsI	GCATC	1 cut(s)	297
BmuI	ACTGGG	1 cut(s)	352
Bpu10I	CCTNAGC	1 cut(s)	368
BpuMI	CCSGG	5 cut(s)	85, 86, 224, 336, 729
BsaHI	GRCGYC	2 cut(s)	375, 561
BsaI	GGTCTC	1 cut(s)	744
BsaJI	CCNNGG	6 cut(s)	13, 22, 83, 84, 427, 473
Bsc4I	CCNNNNNNNGG	4 cut(s)	34, 384, 659, 735
Bse118I	RCCGGY	3 cut(s)	352, 401, 583
Bse1I	ACTGG	1 cut(s)	358
BseBI	CCWGG	2 cut(s)	121, 474
BseDI	CCNNGG	6 cut(s)	13, 22, 83, 84, 427, 473
BseGI	GGATG	1 cut(s)	553
BseLI	CCNNNNNNNGG	4 cut(s)	34, 384, 659, 735
BseMII	CTCAG	4 cut(s)	382, 433, 684, 723
BseNI	ACTGG	1 cut(s)	358
BseXI	GCAGC	3 cut(s)	16, 159, 326
BseYI	CCCAGC	1 cut(s)	106
Bsh1236I	CGCG	1 cut(s)	257
BshFI	GGCC	6 cut(s)	21, 27, 89, 352, 356, 401
BshNI	GGYRCC	1 cut(s)	374
BsiHKCI	CYCGRG	2 cut(s)	84, 295
BsiSI	CCGG	7 cut(s)	85, 224, 335, 353, 402, 584, 729
BslI	CCNNNNNNNGG	4 cut(s)	34, 384, 659, 735
BsmAI	GTCTC	4 cut(s)	281, 292, 552, 744
BsmBI	CGTCTC	2 cut(s)	292, 552
BsnI	GGCC	6 cut(s)	21, 27, 89, 352, 356, 401
Bso31I	GGTCTC	1 cut(s)	744
BsoBI	CYCGRG	2 cut(s)	84, 295
Bsp143I	GATC	2 cut(s)	566, 603
BspACI	CCGC	9 cut(s)	18, 97, 156, 215, 240, 252, 372, 378, 411
BspANI	GGCC	6 cut(s)	21, 27, 89, 352, 356, 401
BspCNI	CTCAG	4 cut(s)	381, 432, 683, 722
BspFNI	CGCG	1 cut(s)	257
BspLI	GGNNCC	4 cut(s)	104, 351, 376, 651
BspPI	GGATC	2 cut(s)	574, 611
BspT107I	GGYRCC	1 cut(s)	374
BspTNI	GGTCTC	1 cut(s)	744
BsrBI	CCGCTC	1 cut(s)	240
BsrFI	RCCGGY	3 cut(s)	352, 401, 583
BsrI	ACTGG	1 cut(s)	358
BssAI	RCCGGY	3 cut(s)	352, 401, 583
BssECI	CCNNGG	6 cut(s)	13, 22, 83, 84, 427, 473
BssMI	GATC	2 cut(s)	566, 603
BssNI	GRCGYC	2 cut(s)	375, 561
BssT1I	CCWWGG	1 cut(s)	427
Bst2UI	CCWGG	2 cut(s)	121, 474
BstACI	GRCGYC	2 cut(s)	375, 561
BstC8I	GCNNGC	4 cut(s)	91, 101, 354, 403
BstDEI	CTNAG	4 cut(s)	368, 419, 670, 709
BstDSI	CCRYGG	1 cut(s)	13
BstENI	CCTNNNNNAGG	1 cut(s)	657
BstF5I	GGATG	1 cut(s)	553
BstFNI	CGCG	1 cut(s)	257
BstH2I	RGCGCY	1 cut(s)	378
BstHHI	GCGC	3 cut(s)	257, 377, 390
BstKTI	GATC	2 cut(s)	569, 606
BstMAI	GTCTC	4 cut(s)	281, 292, 552, 744
BstMBI	GATC	2 cut(s)	566, 603
BstMWI	GCNNNNNNNGC	5 cut(s)	24, 147, 153, 249, 529
BstNI	CCWGG	2 cut(s)	121, 474
BstSCI	CCNGG	7 cut(s)	83, 84, 119, 222, 334, 472, 727
BstUI	CGCG	1 cut(s)	257
BstV1I	GCAGC	3 cut(s)	16, 159, 326
BsuI	GTATCC	1 cut(s)	480
BsuRI	GGCC	6 cut(s)	21, 27, 89, 352, 356, 401
BtgI	CCRYGG	1 cut(s)	13
BtgZI	GCGATG	1 cut(s)	97
BtrI	CACGTC	1 cut(s)	187
BtsCI	GGATG	1 cut(s)	553
BtsI	GCAGTG	1 cut(s)	527
BtsIMutI	CAGTG	2 cut(s)	527, 678
Cac8I	GCNNGC	4 cut(s)	91, 101, 354, 403
CfoI	GCGC	3 cut(s)	257, 377, 390
Cfr10I	RCCGGY	3 cut(s)	352, 401, 583
Cfr13I	GGNCC	5 cut(s)	87, 350, 355, 650, 662
Cfr9I	CCCGGG	1 cut(s)	84
CsiI	ACCWGGT	1 cut(s)	119
Csp6I	GTAC	2 cut(s)	124, 169
CviAII	CATG	4 cut(s)	391, 462, 494, 617
CviQI	GTAC	2 cut(s)	124, 169
DdeI	CTNAG	4 cut(s)	368, 419, 670, 709
DinI	GGCGCC	1 cut(s)	376
DpnI	GATC	2 cut(s)	568, 605
DpnII	GATC	2 cut(s)	566, 603
DriI	GACNNNNNGTC	1 cut(s)	305
EaeI	YGGCCR	1 cut(s)	399
Eam1105I	GACNNNNNGTC	1 cut(s)	305
EciI	GGCGGA	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	427
Eco31I	GGTCTC	1 cut(s)	744
Eco47I	GGWCC	2 cut(s)	650, 662
Eco88I	CYCGRG	2 cut(s)	84, 295
EcoNI	CCTNNNNNAGG	1 cut(s)	657
EcoO109I	RGGNCCY	1 cut(s)	650
EcoRI	GAATTC	1 cut(s)	43
EcoRII	CCWGG	2 cut(s)	119, 472
EcoT14I	CCWWGG	1 cut(s)	427
EcoT22I	ATGCAT	1 cut(s)	576
EgeI	GGCGCC	1 cut(s)	376
EheI	GGCGCC	1 cut(s)	376
ErhI	CCWWGG	1 cut(s)	427
Esp3I	CGTCTC	2 cut(s)	292, 552
FaeI	CATG	4 cut(s)	394, 465, 497, 620
FaiI	YATR	8 cut(s)	392, 463, 495, 576, 578, 618, 622, 641
FatI	CATG	4 cut(s)	390, 461, 493, 616
FauI	CCCGC	1 cut(s)	104
Fnu4HI	GCNGC	8 cut(s)	5, 19, 148, 241, 253, 340, 373, 378
FokI	GGATG	1 cut(s)	560
FseI	GGCCGGCC	1 cut(s)	356
Fsp4HI	GCNGC	8 cut(s)	5, 19, 148, 241, 253, 340, 373, 378
FspBI	CTAG	2 cut(s)	533, 781
GlaI	GCGC	3 cut(s)	256, 376, 389
GluI	GCNGC	8 cut(s)	5, 19, 148, 241, 253, 340, 373, 378
GsaI	CCCAGC	1 cut(s)	110
HaeII	RGCGCY	1 cut(s)	378
HaeIII	GGCC	6 cut(s)	21, 27, 89, 352, 356, 401
HapII	CCGG	7 cut(s)	85, 224, 335, 353, 402, 584, 729
HhaI	GCGC	3 cut(s)	257, 377, 390
Hin1I	GRCGYC	2 cut(s)	375, 561
Hin1II	CATG	4 cut(s)	394, 465, 497, 620
Hin6I	GCGC	3 cut(s)	255, 375, 388
HinP1I	GCGC	3 cut(s)	255, 375, 388
HinfI	GANTC	1 cut(s)	613
HpaII	CCGG	7 cut(s)	85, 224, 335, 353, 402, 584, 729
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	2 cut(s)	184, 220
Hpy188I	TCNGA	3 cut(s)	42, 422, 566
Hpy188III	TCNNGA	6 cut(s)	235, 278, 297, 319, 607, 691
Hpy8I	GTNNAC	2 cut(s)	184, 220
Hpy99I	CGWCG	4 cut(s)	146, 155, 456, 566
HpyAV	CCTTC	5 cut(s)	131, 340, 401, 497, 499
HpyCH4IV	ACGT	2 cut(s)	186, 561
HpyCH4V	TGCA	3 cut(s)	4, 574, 639
HpyF10VI	GCNNNNNNNGC	5 cut(s)	24, 147, 153, 249, 529
HpyF3I	CTNAG	4 cut(s)	368, 419, 670, 709
HpySE526I	ACGT	2 cut(s)	186, 561
Hsp92I	GRCGYC	2 cut(s)	375, 561
Hsp92II	CATG	4 cut(s)	394, 465, 497, 620
HspAI	GCGC	3 cut(s)	255, 375, 388
KasI	GGCGCC	1 cut(s)	374
KroI	GCCGGC	2 cut(s)	352, 401
KroNI	GCCGGC	2 cut(s)	354, 403
Kzo9I	GATC	2 cut(s)	566, 603
LmnI	GCTCC	4 cut(s)	12, 108, 158, 626
Lsp1109I	GCAGC	3 cut(s)	16, 159, 326
LweI	GCATC	1 cut(s)	297
MabI	ACCWGGT	1 cut(s)	119
MaeI	CTAG	2 cut(s)	533, 781
MaeII	ACGT	2 cut(s)	186, 561
MaeIII	GTNAC	3 cut(s)	260, 307, 319
MalI	GATC	2 cut(s)	568, 605
MbiI	CCGCTC	1 cut(s)	240
MboI	GATC	2 cut(s)	566, 603
MboII	GAAGA	1 cut(s)	688
MluCI	AATT	5 cut(s)	43, 514, 631, 733, 769
Mly113I	GGCGCC	1 cut(s)	375
MlyI	GAGTC	1 cut(s)	622
MmeI	TCCRAC	1 cut(s)	544
MnlI	CCTC	8 cut(s)	20, 32, 198, 238, 377, 538, 663, 776
Mph1103I	ATGCAT	1 cut(s)	576
MroNI	GCCGGC	2 cut(s)	352, 401
MroXI	GAANNNNTTC	1 cut(s)	194
MslI	CAYNNNNRTG	2 cut(s)	395, 498
MspA1I	CMGCKG	2 cut(s)	99, 372
MspI	CCGG	7 cut(s)	85, 224, 335, 353, 402, 584, 729
MspR9I	CCNGG	7 cut(s)	85, 86, 121, 224, 336, 474, 729
MvaI	CCWGG	2 cut(s)	121, 474
MvnI	CGCG	1 cut(s)	257
MwoI	GCNNNNNNNGC	5 cut(s)	24, 147, 153, 249, 529
NaeI	GCCGGC	2 cut(s)	354, 403
NarI	GGCGCC	1 cut(s)	375
NciI	CCSGG	5 cut(s)	85, 86, 224, 336, 729
NdeII	GATC	2 cut(s)	566, 603
NgoMIV	GCCGGC	2 cut(s)	352, 401
NlaIII	CATG	4 cut(s)	394, 465, 497, 620
NlaIV	GGNNCC	4 cut(s)	104, 351, 376, 651
NmuCI	GTSAC	2 cut(s)	307, 319
NsiI	ATGCAT	1 cut(s)	576
PaeR7I	CTCGAG	1 cut(s)	295
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PdiI	GCCGGC	2 cut(s)	354, 403
PdmI	GAANNNNTTC	1 cut(s)	194
PkrI	GCNGC	8 cut(s)	6, 20, 149, 242, 254, 341, 374, 379
PleI	GAGTC	1 cut(s)	621
PluTI	GGCGCC	1 cut(s)	378
PpsI	GAGTC	1 cut(s)	621
PpuMI	RGGWCCY	1 cut(s)	650
Psp5II	RGGWCCY	1 cut(s)	650
Psp6I	CCWGG	2 cut(s)	119, 472
PspFI	CCCAGC	1 cut(s)	106
PspGI	CCWGG	2 cut(s)	119, 472
PspN4I	GGNNCC	4 cut(s)	104, 351, 376, 651
PspPI	GGNCC	5 cut(s)	87, 350, 355, 650, 662
PspPPI	RGGWCCY	1 cut(s)	650
RigI	GGCCGGCC	1 cut(s)	356
RsaI	GTAC	2 cut(s)	125, 170
RsaNI	GTAC	2 cut(s)	124, 169
RseI	CAYNNNNRTG	2 cut(s)	395, 498
SatI	GCNGC	8 cut(s)	5, 19, 148, 241, 253, 340, 373, 378
Sau3AI	GATC	2 cut(s)	566, 603
Sau96I	GGNCC	5 cut(s)	87, 350, 355, 650, 662
SchI	GAGTC	1 cut(s)	622
ScrFI	CCNGG	7 cut(s)	85, 86, 121, 224, 336, 474, 729
SetI	ASST	7 cut(s)	9, 122, 189, 369, 508, 564, 631
SexAI	ACCWGGT	1 cut(s)	119
SfaNI	GCATC	1 cut(s)	297
SfoI	GGCGCC	1 cut(s)	376
Sfr274I	CTCGAG	1 cut(s)	295
SinI	GGWCC	2 cut(s)	650, 662
SlaI	CTCGAG	1 cut(s)	295
SmaI	CCCGGG	1 cut(s)	86
SmiMI	CAYNNNNRTG	2 cut(s)	395, 498
SmlI	CTYRAG	1 cut(s)	295
SmoI	CTYRAG	1 cut(s)	295
Sse9I	AATT	5 cut(s)	43, 514, 631, 733, 769
SsiI	CCGC	9 cut(s)	18, 97, 156, 215, 240, 252, 372, 378, 411
SspDI	GGCGCC	1 cut(s)	374
SspMI	CTAG	2 cut(s)	533, 781
StyD4I	CCNGG	7 cut(s)	83, 84, 119, 222, 334, 472, 727
StyI	CCWWGG	1 cut(s)	427
TaiI	ACGT	2 cut(s)	189, 564
TaqI	TCGA	6 cut(s)	279, 296, 344, 363, 606, 692
TasI	AATT	5 cut(s)	43, 514, 631, 733, 769
TauI	GCSGC	5 cut(s)	21, 243, 255, 375, 380
TscAI	CASTG	2 cut(s)	534, 678
TseFI	GTSAC	2 cut(s)	307, 319
TseI	GCWGC	3 cut(s)	4, 147, 339
Tsp45I	GTSAC	2 cut(s)	307, 319
TspDTI	ATGAA	1 cut(s)	516
TspGWI	ACGGA	2 cut(s)	430, 469
TspMI	CCCGGG	1 cut(s)	84
TspRI	CASTG	2 cut(s)	534, 678
VpaK11BI	GGWCC	2 cut(s)	650, 662
XagI	CCTNNNNNAGG	1 cut(s)	657
XapI	RAATTY	1 cut(s)	43
XhoI	CTCGAG	1 cut(s)	295
XmaI	CCCGGG	1 cut(s)	84
XmnI	GAANNNNTTC	1 cut(s)	194
XspI	CTAG	2 cut(s)	533, 781
ZraI	GACGTC	1 cut(s)	562
Zsp2I	ATGCAT	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.