Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0009571

Physical Location & Seq

Genomic Coordinates Forward (+)

39291979 .. 39292983

Gene Structure 1005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G025850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGCAGCCCCTTCGATTTGGCCTATTATTGCTGGTCAATTCTGCGATGCTGTTAATAATTGTTACAGCTCAAAATACGCATTGGCTTCCTGCCTCAGCCACCTGGTACGGCAGCCCCGAAGGTGACGGCATGGACGTGAAGCCATTGAGAGCGAGAGTGGGCGCAGTGAGCCCGGTGCTATTCAAGAACGGCGAGGGTTGCGGCGCATGTTACAAAGTCAAGTGTTTGGACAAGTCCATCTGCTCCAGGCGAGCCGTCACCATAATCGTCACCGACGAGTGCCCCGGTGGCTACTGCTCAGGTGGGCGGACCCATTTCGACCTCAGTGGCGCAGCCTTTGGCCGCATGGCTATTGCCGGTGAGCATGGTCTGCTCAGAAACCGAGGCGAACTATCCGTTCTTTACCGACGGACACCATGTAAATATCCTGGGAAGCAGGTGGCCTTCCATGTGAACGAAGGTTCAACCAACTATTGGCTCTCACTTCTGGTAGAGTTTGAAGATGGAGATGGAGATGTCGGATCAATGCATATAAGACAAGCAAGTTCTAGTGAGTGGGTAGCGATGAGGCATGTCTGGGGAGCAAGTTGGTGCATCGATGGAGGACCTTTGAGAGGGCCATTCTCAGTGAAGATAACCACACTATCAACAGCTAGAAGCCTCACCGCCCGGGATGTGATTCCAAGCAATTGGTCTCCCAAAGCCACTTACACCTCTCGCCTGAATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006949 GO:0008150 GO:0009506 GO:0009653 GO:0009987 GO:0016020 GO:0030054 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

243

Amino Acids

26.47

Weight (kDa)

9.07

Isoelectric Point (pI)

34.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	55 - 127	1.4e-15	Lytic transglycolase
Expansin_C	PF01357	147 - 228	5.8e-25	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28250 AT4G28250 AT4G28250 AT4G28250
fragaria_vesca	FvH4_6g26120 FvH4_6g26120 FvH4_6g26120
malus_domestica	MD09G1250100.v1.1 MD17G1242600.v1.1
prunus_persica	Prupe.3G155600_v2.0.a1
pyrus_communis	pycom09g16670 pycom17g24540
rosa_chinensis	RchiOBHm_Chr2g0126231
rosa_laevigata	RLG00000018894
rosa_multiflora	Rmu_ssc0000264.1_g000020
rosa_roxburghii	Rroxscaffold_2G00117360
rosa_rugosa	Rorug02G0261900
rosa_samantha	Rh2AG318900 Rh2BG327400 Rh2DG345700 Rh2DG347100
rosa_wichuraiana	Rw2G025850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	427
Acc36I	ACCTGC	1 cut(s)	427
AccB7I	CCANNNNNTGG	1 cut(s)	474
AciI	CCGC	4 cut(s)	201, 307, 343, 666
AclWI	GGATC	1 cut(s)	529
AcoI	YGGCCR	1 cut(s)	340
AcsI	RAATTY	1 cut(s)	724
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	2 cut(s)	474, 614
AgsI	TTSAA	3 cut(s)	184, 465, 500
AjiI	CACGTC	1 cut(s)	136
AjnI	CCWGG	3 cut(s)	101, 245, 427
AluBI	AGCT	2 cut(s)	68, 653
AluI	AGCT	2 cut(s)	68, 653
Alw26I	GTCTC	1 cut(s)	699
AlwI	GGATC	1 cut(s)	529
Ama87I	CYCGRG	1 cut(s)	669
AoxI	GGCC	4 cut(s)	19, 340, 441, 617
ApeKI	GCWGC	3 cut(s)	4, 111, 332
ApoI	RAATTY	1 cut(s)	724
AspLEI	GCGC	3 cut(s)	164, 206, 332
AspS9I	GGNCC	3 cut(s)	309, 605, 617
AsuC2I	CCSGG	4 cut(s)	173, 285, 670, 671
AsuHPI	GGTGA	5 cut(s)	134, 250, 262, 371, 655
AvaI	CYCGRG	1 cut(s)	669
AvaII	GGWCC	2 cut(s)	309, 605
BaeGI	GKGCMC	1 cut(s)	284
BanII	GRGCYC	1 cut(s)	173
BbvCI	CCTCAGC	1 cut(s)	94
BbvI	GCAGC	3 cut(s)	16, 123, 344
BccI	CCATC	4 cut(s)	245, 497, 503, 593
BceAI	ACGGC	4 cut(s)	124, 142, 205, 239
BcgI	CGANNNNNNTGC	1 cut(s)	27
BciT130I	CCWGG	3 cut(s)	103, 247, 429
BcnI	CCSGG	4 cut(s)	173, 285, 670, 671
BcoDI	GTCTC	1 cut(s)	699
BfaI	CTAG	2 cut(s)	549, 654
BfuAI	ACCTGC	1 cut(s)	427
BglI	GCCNNNNNGGC	1 cut(s)	288
BisI	GCNGC	5 cut(s)	5, 112, 202, 333, 343
BlsI	GCNGC	5 cut(s)	6, 113, 203, 334, 344
Bme1390I	CCNGG	7 cut(s)	103, 173, 247, 285, 429, 670, 671
Bme18I	GGWCC	2 cut(s)	309, 605
BmeT110I	CYCGRG	1 cut(s)	669
BmgBI	CACGTC	1 cut(s)	136
BmgT120I	GGNCC	3 cut(s)	309, 605, 617
BmiI	GGNNCC	1 cut(s)	311
BmrFI	CCNGG	7 cut(s)	103, 173, 247, 285, 429, 670, 671
BmsI	GCATC	2 cut(s)	36, 603
BpmI	CTGGAG	1 cut(s)	229
Bpu10I	CCTNAGC	2 cut(s)	94, 298
BpuMI	CCSGG	4 cut(s)	173, 285, 670, 671
Bsa29I	ATCGAT	1 cut(s)	597
BsaI	GGTCTC	1 cut(s)	699
BsaJI	CCNNGG	4 cut(s)	283, 382, 428, 669
Bsc4I	CCNNNNNNNGG	2 cut(s)	474, 614
Bse118I	RCCGGY	1 cut(s)	356
BseBI	CCWGG	3 cut(s)	103, 247, 429
BseCI	ATCGAT	1 cut(s)	597
BseDI	CCNNGG	4 cut(s)	283, 382, 428, 669
BseGI	GGATG	1 cut(s)	679
BseLI	CCNNNNNNNGG	2 cut(s)	474, 614
BseMII	CTCAG	5 cut(s)	108, 312, 337, 388, 639
BseSI	GKGCMC	1 cut(s)	284
BseXI	GCAGC	3 cut(s)	16, 123, 344
BshFI	GGCC	4 cut(s)	21, 342, 443, 619
BshVI	ATCGAT	1 cut(s)	597
BsiHKCI	CYCGRG	1 cut(s)	669
BsiSI	CCGG	4 cut(s)	173, 285, 357, 670
BslI	CCNNNNNNNGG	2 cut(s)	474, 614
BsmAI	GTCTC	1 cut(s)	699
BsnI	GGCC	4 cut(s)	21, 342, 443, 619
Bso31I	GGTCTC	1 cut(s)	699
BsoBI	CYCGRG	1 cut(s)	669
Bsp1286I	GDGCHC	2 cut(s)	173, 284
Bsp143I	GATC	1 cut(s)	521
BspACI	CCGC	4 cut(s)	201, 307, 343, 666
BspANI	GGCC	4 cut(s)	21, 342, 443, 619
BspCNI	CTCAG	5 cut(s)	107, 311, 336, 387, 638
BspDI	ATCGAT	1 cut(s)	597
BspLI	GGNNCC	1 cut(s)	311
BspMI	ACCTGC	1 cut(s)	427
BspPI	GGATC	1 cut(s)	529
BspTNI	GGTCTC	1 cut(s)	699
BsrFI	RCCGGY	1 cut(s)	356
BssAI	RCCGGY	1 cut(s)	356
BssECI	CCNNGG	4 cut(s)	283, 382, 428, 669
BssMI	GATC	1 cut(s)	521
Bst2UI	CCWGG	3 cut(s)	103, 247, 429
BstAPI	GCANNNNNTGC	1 cut(s)	370
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	5 cut(s)	94, 298, 323, 374, 625
BstENI	CCTNNNNNAGG	1 cut(s)	612
BstF5I	GGATG	1 cut(s)	679
BstHHI	GCGC	3 cut(s)	164, 206, 332
BstKTI	GATC	1 cut(s)	524
BstMAI	GTCTC	1 cut(s)	699
BstMBI	GATC	1 cut(s)	521
BstMWI	GCNNNNNNNGC	4 cut(s)	168, 198, 288, 370
BstNI	CCWGG	3 cut(s)	103, 247, 429
BstNSI	RCATGY	2 cut(s)	210, 575
BstSCI	CCNGG	7 cut(s)	101, 171, 245, 283, 427, 668, 669
BstSLI	GKGCMC	1 cut(s)	284
BstV1I	GCAGC	3 cut(s)	16, 123, 344
BstXI	CCANNNNNNTGG	1 cut(s)	690
Bsu15I	ATCGAT	1 cut(s)	597
BsuRI	GGCC	4 cut(s)	21, 342, 443, 619
BsuTUI	ATCGAT	1 cut(s)	597
BtgZI	GCGATG	2 cut(s)	59, 578
BtrI	CACGTC	1 cut(s)	136
BtsCI	GGATG	1 cut(s)	679
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	3 cut(s)	171, 331, 633
BveI	ACCTGC	1 cut(s)	427
Cac8I	GCNNGC	1 cut(s)	252
CfoI	GCGC	3 cut(s)	164, 206, 332
Cfr10I	RCCGGY	1 cut(s)	356
Cfr13I	GGNCC	3 cut(s)	309, 605, 617
Cfr9I	CCCGGG	1 cut(s)	669
ClaI	ATCGAT	1 cut(s)	597
CsiI	ACCWGGT	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	7 cut(s)	130, 207, 346, 365, 417, 449, 572
CviQI	GTAC	1 cut(s)	106
DdeI	CTNAG	5 cut(s)	94, 298, 323, 374, 625
DpnI	GATC	1 cut(s)	523
DpnII	GATC	1 cut(s)	521
EaeI	YGGCCR	1 cut(s)	340
EciI	GGCGGA	1 cut(s)	322
Eco24I	GRGCYC	1 cut(s)	173
Eco31I	GGTCTC	1 cut(s)	699
Eco47I	GGWCC	2 cut(s)	309, 605
Eco88I	CYCGRG	1 cut(s)	669
EcoNI	CCTNNNNNAGG	1 cut(s)	612
EcoO109I	RGGNCCY	1 cut(s)	605
EcoRII	CCWGG	3 cut(s)	101, 245, 427
EcoT22I	ATGCAT	1 cut(s)	531
EcoT38I	GRGCYC	1 cut(s)	173
FaeI	CATG	7 cut(s)	133, 210, 349, 368, 420, 452, 575
FatI	CATG	7 cut(s)	129, 206, 345, 364, 416, 448, 571
Fnu4HI	GCNGC	5 cut(s)	5, 112, 202, 333, 343
FokI	GGATG	1 cut(s)	686
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	5 cut(s)	5, 112, 202, 333, 343
FspBI	CTAG	2 cut(s)	549, 654
GlaI	GCGC	3 cut(s)	163, 205, 331
GluI	GCNGC	5 cut(s)	5, 112, 202, 333, 343
GsuI	CTGGAG	1 cut(s)	229
HaeIII	GGCC	4 cut(s)	21, 342, 443, 619
HapII	CCGG	4 cut(s)	173, 285, 357, 670
HhaI	GCGC	3 cut(s)	164, 206, 332
Hin1II	CATG	7 cut(s)	133, 210, 349, 368, 420, 452, 575
Hin6I	GCGC	3 cut(s)	162, 204, 330
HinP1I	GCGC	3 cut(s)	162, 204, 330
HinfI	GANTC	1 cut(s)	679
HpaII	CCGG	4 cut(s)	173, 285, 357, 670
HphI	GGTGA	5 cut(s)	134, 250, 262, 371, 655
Hpy166II	GTNNAC	1 cut(s)	454
Hpy188I	TCNGA	2 cut(s)	377, 521
Hpy188III	TCNNGA	1 cut(s)	184
Hpy8I	GTNNAC	1 cut(s)	454
Hpy99I	CGWCG	2 cut(s)	278, 411
HpyAV	CCTTC	4 cut(s)	20, 113, 452, 454
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	3 cut(s)	4, 529, 594
HpyF10VI	GCNNNNNNNGC	4 cut(s)	168, 198, 288, 370
HpyF3I	CTNAG	5 cut(s)	94, 298, 323, 374, 625
HpySE526I	ACGT	1 cut(s)	135
Hsp92II	CATG	7 cut(s)	133, 210, 349, 368, 420, 452, 575
HspAI	GCGC	3 cut(s)	162, 204, 330
Kzo9I	GATC	1 cut(s)	521
LmnI	GCTCC	2 cut(s)	248, 581
Lsp1109I	GCAGC	3 cut(s)	16, 123, 344
LweI	GCATC	2 cut(s)	36, 603
MabI	ACCWGGT	1 cut(s)	101
MaeI	CTAG	2 cut(s)	549, 654
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	5 cut(s)	61, 122, 209, 256, 268
MalI	GATC	1 cut(s)	523
MboI	GATC	1 cut(s)	521
MboII	GAAGA	2 cut(s)	512, 643
MfeI	CAATTG	1 cut(s)	688
MhlI	GDGCHC	2 cut(s)	173, 284
MluCI	AATT	4 cut(s)	37, 57, 688, 724
MmeI	TCCRAC	1 cut(s)	499
MnlI	CCTC	9 cut(s)	103, 187, 332, 377, 561, 596, 608, 671, 724
Mph1103I	ATGCAT	1 cut(s)	531
MseI	TTAA	1 cut(s)	53
MslI	CAYNNNNRTG	1 cut(s)	134
MspI	CCGG	4 cut(s)	173, 285, 357, 670
MspR9I	CCNGG	7 cut(s)	103, 173, 247, 285, 429, 670, 671
MunI	CAATTG	1 cut(s)	688
MvaI	CCWGG	3 cut(s)	103, 247, 429
MwoI	GCNNNNNNNGC	4 cut(s)	168, 198, 288, 370
NciI	CCSGG	4 cut(s)	173, 285, 670, 671
NdeII	GATC	1 cut(s)	521
NlaIII	CATG	7 cut(s)	133, 210, 349, 368, 420, 452, 575
NlaIV	GGNNCC	1 cut(s)	311
NmuCI	GTSAC	3 cut(s)	122, 256, 268
NsiI	ATGCAT	1 cut(s)	531
NspI	RCATGY	2 cut(s)	210, 575
PaqCI	CACCTGC	1 cut(s)	427
PcsI	WCGNNNNNNNCGW	3 cut(s)	114, 132, 273
PfeI	GAWTC	1 cut(s)	679
PflMI	CCANNNNNTGG	1 cut(s)	474
PkrI	GCNGC	5 cut(s)	6, 113, 203, 334, 344
PpuMI	RGGWCCY	1 cut(s)	605
Psp5II	RGGWCCY	1 cut(s)	605
Psp6I	CCWGG	3 cut(s)	101, 245, 427
PspGI	CCWGG	3 cut(s)	101, 245, 427
PspN4I	GGNNCC	1 cut(s)	311
PspPI	GGNCC	3 cut(s)	309, 605, 617
PspPPI	RGGWCCY	1 cut(s)	605
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
RseI	CAYNNNNRTG	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	53
SatI	GCNGC	5 cut(s)	5, 112, 202, 333, 343
Sau3AI	GATC	1 cut(s)	521
Sau96I	GGNCC	3 cut(s)	309, 605, 617
ScrFI	CCNGG	7 cut(s)	103, 173, 247, 285, 429, 670, 671
SduI	GDGCHC	2 cut(s)	173, 284
SexAI	ACCWGGT	1 cut(s)	101
SfaNI	GCATC	2 cut(s)	36, 603
SinI	GGWCC	2 cut(s)	309, 605
SmaI	CCCGGG	1 cut(s)	671
SmiMI	CAYNNNNRTG	1 cut(s)	134
Sse9I	AATT	4 cut(s)	37, 57, 688, 724
SsiI	CCGC	4 cut(s)	201, 307, 343, 666
SspMI	CTAG	2 cut(s)	549, 654
StyD4I	CCNGG	7 cut(s)	101, 171, 245, 283, 427, 668, 669
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	3 cut(s)	13, 318, 597
TasI	AATT	4 cut(s)	37, 57, 688, 724
TauI	GCSGC	2 cut(s)	204, 345
TfiI	GAWTC	1 cut(s)	679
Tru1I	TTAA	1 cut(s)	53
Tru9I	TTAA	1 cut(s)	53
TscAI	CASTG	3 cut(s)	171, 331, 633
TseFI	GTSAC	3 cut(s)	122, 256, 268
TseI	GCWGC	3 cut(s)	4, 111, 332
Tsp45I	GTSAC	3 cut(s)	122, 256, 268
TspGWI	ACGGA	2 cut(s)	385, 424
TspMI	CCCGGG	1 cut(s)	669
TspRI	CASTG	3 cut(s)	171, 331, 633
Van91I	CCANNNNNTGG	1 cut(s)	474
VpaK11BI	GGWCC	2 cut(s)	309, 605
XagI	CCTNNNNNAGG	1 cut(s)	612
XapI	RAATTY	1 cut(s)	724
XceI	RCATGY	2 cut(s)	210, 575
XmaI	CCCGGG	1 cut(s)	669
XspI	CTAG	2 cut(s)	549, 654
Zsp2I	ATGCAT	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.