AT4G28280

GPI-anchored protein LORELEI-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0013877
Physical Location & Seq
Forward (+)
14010685 .. 14012700
2016 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G28280.1

Sequence Viewer

Length: 405 bp
ATGATTATTAGCTTAATAAGCAAAATATTCCATGATCATTACGTTAATGACATTTTAACAGCATGCAAAGAAGATTTTGCGGCAAAGAATTACACAATCATAACGAGTAAATGCAAAGGACCAAATTACCCGGCCAAAGTATGTTGTTCGGCCTTCAAGGACTTTGCTTGCCCATTCGCGGAAGTTCTTAACGATGAAAAGACAGATTGTGCCTCCACAATGTTTAGCTACATCAATCTCTACGGTCGTTATCCTCCTGGAATATTCGCTAACATGTGCAAAGAAGGCAAAGAAGGTCTCGATTGCACCGACGTCACCCCTACATCATCTTCCCATGCATCGATCCCTCTTGTTTCCACACACGTTTTGCTAATCACCGTTTCCATCTTGTTTCACCTCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0016020 GO:0031224 GO:0031225 GO:0042995 GO:0044425 GO:0044464 GO:0090406 GO:0120025
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

14.83

Weight (kDa)

6.16

Isoelectric Point (pI)

28.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LLG1 PF26578 25 - 101 9e-39 LLG1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013877)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28280 AT4G28280 AT4G28280
malus_domestica MD03G1042100.v1.1 MD11G1044400.v1.1 MD11G1045000.v1.1
prunus_persica Prupe.6G034000_v2.0.a1
pyrus_communis pycom03g03260
rosa_chinensis RchiOBHm_Chr5g0074761
rosa_laevigata RLG00000036502
rosa_multiflora Rmu_sc0000909.1_g000018
rosa_roxburghii Rroxscaffold_1G00006820
rosa_rugosa Rorug05G0433700
rosa_samantha Rh5AG491400 Rh5BG512800 Rh5CG536500
rosa_wichuraiana Rw5G045510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 315
AccII CGCG 1 cut(s) 179
AciI CCGC 2 cut(s) 80, 179
AclWI GGATC 1 cut(s) 337
AcoI YGGCCR 1 cut(s) 132
AcyI GRCGYC 1 cut(s) 312
AfiI CCNNNNNNNGG 1 cut(s) 178
AflIII ACRYGT 2 cut(s) 273, 361
AgsI TTSAA 1 cut(s) 157
AjnI CCWGG 1 cut(s) 256
AluBI AGCT 2 cut(s) 12, 228
AluI AGCT 2 cut(s) 12, 228
Alw26I GTCTC 1 cut(s) 302
AlwI GGATC 1 cut(s) 337
AoxI GGCC 2 cut(s) 132, 150
AspS9I GGNCC 1 cut(s) 119
AsuC2I CCSGG 1 cut(s) 131
AsuHPI GGTGA 3 cut(s) 307, 367, 386
AvaII GGWCC 1 cut(s) 119
BccI CCATC 1 cut(s) 392
BciT130I CCWGG 1 cut(s) 258
BclI TGATCA 1 cut(s) 34
BcnI CCSGG 1 cut(s) 131
BcoDI GTCTC 1 cut(s) 302
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme1390I CCNGG 2 cut(s) 131, 258
Bme18I GGWCC 1 cut(s) 119
BmgT120I GGNCC 1 cut(s) 119
BmrFI CCNGG 2 cut(s) 131, 258
BmsI GCATC 1 cut(s) 347
BpuMI CCSGG 1 cut(s) 131
Bsa29I ATCGAT 1 cut(s) 341
BsaHI GRCGYC 1 cut(s) 312
BsaI GGTCTC 1 cut(s) 302
Bsc4I CCNNNNNNNGG 1 cut(s) 178
BseBI CCWGG 1 cut(s) 258
BseCI ATCGAT 1 cut(s) 341
BseLI CCNNNNNNNGG 1 cut(s) 178
Bsh1236I CGCG 1 cut(s) 179
Bsh1285I CGRYCG 1 cut(s) 247
BshFI GGCC 2 cut(s) 134, 152
BshVI ATCGAT 1 cut(s) 341
BsiEI CGRYCG 1 cut(s) 247
BsiSI CCGG 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 178
BsmAI GTCTC 1 cut(s) 302
BsnI GGCC 2 cut(s) 134, 152
Bso31I GGTCTC 1 cut(s) 302
Bsp143I GATC 2 cut(s) 34, 342
BspACI CCGC 2 cut(s) 80, 179
BspANI GGCC 2 cut(s) 134, 152
BspDI ATCGAT 1 cut(s) 341
BspFNI CGCG 1 cut(s) 179
BspPI GGATC 1 cut(s) 337
BspTNI GGTCTC 1 cut(s) 302
BssMI GATC 2 cut(s) 34, 342
BssNI GRCGYC 1 cut(s) 312
Bst2UI CCWGG 1 cut(s) 258
Bst4CI ACNGT 2 cut(s) 245, 379
BstACI GRCGYC 1 cut(s) 312
BstC8I GCNNGC 2 cut(s) 64, 169
BstFNI CGCG 1 cut(s) 179
BstKTI GATC 2 cut(s) 37, 345
BstMAI GTCTC 1 cut(s) 302
BstMBI GATC 2 cut(s) 34, 342
BstMCI CGRYCG 1 cut(s) 247
BstMWI GCNNNNNNNGC 2 cut(s) 18, 285
BstNI CCWGG 1 cut(s) 258
BstNSI RCATGY 2 cut(s) 66, 277
BstSCI CCNGG 2 cut(s) 129, 256
BstUI CGCG 1 cut(s) 179
Bsu15I ATCGAT 1 cut(s) 341
BsuRI GGCC 2 cut(s) 134, 152
BsuTUI ATCGAT 1 cut(s) 341
Cac8I GCNNGC 2 cut(s) 64, 169
Cfr13I GGNCC 1 cut(s) 119
ClaI ATCGAT 1 cut(s) 341
CviAII CATG 4 cut(s) 32, 63, 274, 335
CviJI RGCY 4 cut(s) 12, 134, 152, 228
CviKI_1 RGCY 4 cut(s) 12, 134, 152, 228
DpnI GATC 2 cut(s) 36, 344
DpnII GATC 2 cut(s) 34, 342
EaeI YGGCCR 1 cut(s) 132
Eco31I GGTCTC 1 cut(s) 302
Eco47I GGWCC 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 256
EcoT22I ATGCAT 1 cut(s) 340
FaeI CATG 4 cut(s) 35, 66, 277, 338
FaiI YATR 6 cut(s) 33, 64, 101, 142, 275, 336
FatI CATG 4 cut(s) 31, 62, 273, 334
FbaI TGATCA 1 cut(s) 34
Fnu4HI GCNGC 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 81
GluI GCNGC 1 cut(s) 81
HaeIII GGCC 2 cut(s) 134, 152
HapII CCGG 1 cut(s) 131
Hin1I GRCGYC 1 cut(s) 312
Hin1II CATG 4 cut(s) 35, 66, 277, 338
HpaII CCGG 1 cut(s) 131
HphI GGTGA 3 cut(s) 307, 367, 386
Hpy188III TCNNGA 1 cut(s) 299
Hpy99I CGWCG 1 cut(s) 314
HpyAV CCTTC 3 cut(s) 163, 278, 287
HpyCH4III ACNGT 2 cut(s) 245, 379
HpyCH4IV ACGT 3 cut(s) 42, 312, 363
HpyCH4V TGCA 5 cut(s) 66, 114, 279, 306, 338
HpyF10VI GCNNNNNNNGC 2 cut(s) 18, 285
HpySE526I ACGT 3 cut(s) 42, 312, 363
Hsp92I GRCGYC 1 cut(s) 312
Hsp92II CATG 4 cut(s) 35, 66, 277, 338
Ksp22I TGATCA 1 cut(s) 34
Kzo9I GATC 2 cut(s) 34, 342
LpnPI CCDG 3 cut(s) 144, 243, 270
LweI GCATC 1 cut(s) 347
MaeII ACGT 3 cut(s) 42, 312, 363
MaeIII GTNAC 1 cut(s) 313
MalI GATC 2 cut(s) 36, 344
MboI GATC 2 cut(s) 34, 342
MboII GAAGA 3 cut(s) 83, 321, 391
MluCI AATT 2 cut(s) 88, 124
MnlI CCTC 3 cut(s) 223, 264, 357
Mph1103I ATGCAT 1 cut(s) 340
MseI TTAA 4 cut(s) 14, 45, 56, 189
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 2 cut(s) 131, 258
MvaI CCWGG 1 cut(s) 258
MvnI CGCG 1 cut(s) 179
MwoI GCNNNNNNNGC 2 cut(s) 18, 285
NciI CCSGG 1 cut(s) 131
NdeII GATC 2 cut(s) 34, 342
NlaIII CATG 4 cut(s) 35, 66, 277, 338
NmuCI GTSAC 1 cut(s) 313
NsiI ATGCAT 1 cut(s) 340
NspI RCATGY 2 cut(s) 66, 277
PaeI GCATGC 1 cut(s) 66
PciI ACATGT 1 cut(s) 273
PcsI WCGNNNNNNNCGW 1 cut(s) 306
PfoI TCCNGGA 1 cut(s) 256
PkrI GCNGC 1 cut(s) 82
PscI ACATGT 1 cut(s) 273
Psp6I CCWGG 1 cut(s) 256
PspGI CCWGG 1 cut(s) 256
PspPI GGNCC 1 cut(s) 119
SaqAI TTAA 4 cut(s) 14, 45, 56, 189
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 2 cut(s) 34, 342
Sau96I GGNCC 1 cut(s) 119
ScrFI CCNGG 2 cut(s) 131, 258
SetI ASST 7 cut(s) 14, 45, 230, 298, 315, 366, 399
SfaNI GCATC 1 cut(s) 347
SinI GGWCC 1 cut(s) 119
SphI GCATGC 1 cut(s) 66
Sse9I AATT 2 cut(s) 88, 124
SsiI CCGC 2 cut(s) 80, 179
SspI AATATT 2 cut(s) 27, 264
StyD4I CCNGG 2 cut(s) 129, 256
TaaI ACNGT 2 cut(s) 245, 379
TaiI ACGT 3 cut(s) 45, 315, 366
TaqI TCGA 2 cut(s) 300, 341
TasI AATT 2 cut(s) 88, 124
TauI GCSGC 1 cut(s) 83
Tru1I TTAA 4 cut(s) 14, 45, 56, 189
Tru9I TTAA 4 cut(s) 14, 45, 56, 189
TseFI GTSAC 1 cut(s) 313
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 1 cut(s) 210
VpaK11BI GGWCC 1 cut(s) 119
XceI RCATGY 2 cut(s) 66, 277
ZraI GACGTC 1 cut(s) 313
Zsp2I ATGCAT 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.